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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018937 ID=TCONS_00018937|Name=TCONS_00018937|organism=Clytia hemisphaerica|type=transcript|length=1612bp
TACCTTCTCAGCATTGTAATTCAATCCTATAATGCCCACTCCATGCTTTT
CTTCTAAGTCTAGCTTCAAACGCCACTCAAGTAAACTAGTTGGCTCAACG
TGCCAGCAAACATACACAATGTTGCCAGCGTAATGTGGATCTCTGCTCAG
TTGTTTTGCTTTCTCCTCCAGTAAGAAGCTTTTTCCTGTTCCATAACCAC
CCCTGATGAGAAGTTTTCGAAGGCGTGGCTCGTTGggattcattatatgc
atttgAGTGCTGgaataaaaaacaatattttcaacGGTTGAAATAGATTC
GATGGCGTTTGACGTATACTCGACCCAATTTGAGGTGGTTACTGGAGCAC
TTTTTGACACGTGGATTGTGAAGATGATCATTCTTAACACATTTTTGACT
TGATTTAACGATGAAACGGTGCATGGTAATTCAGGATATTGTGTGAAAAT
CCCCAAAAGCCATGATTTGATGTTAGTTTGAAAGGTAATGTAGTGTTGTG
TTTGATTGAGATTATGATGATTTTTCTCGACACAGATAACTGGTAGGAAA
GTCCACCAGTTGTCAAGTTGATCACCAAGTTTCTCGTCGAATATTTGTTT
GTAAGTCTCCAGCTGTCCGATTGCATCCATTGTTGCTGACGATTGGCGTT
TGATTTCAACAGCGATGATCAGTTTTCTTGTCCATGAGAGGAGAAGGAAA
TCAAACTCTTgatgaaatttctttttaatgttAGTCATGAATTTAGCAGA
TTGTAGGATGACAGTATCGTGAAGAATTTCATCGGATTGTAATGCTAAAA
ATTGATTCCGAAACCAATCTTCAGCATTTTCACCTAATTCTGCCAGGTTC
AATTCAAAATACCATAAGGCTATAGGGTCAGTTGGTGGATTACTCTTAAt
cagattttcaatttttcgacgCAAGTTTGCCACACTACTTTGGAGCATGT
TTTTTAACTTGGATGATGATGGTGGTGAGTTTGAAGCAAGCTCTGCAAGA
CAAGCTCTGGCAAAAGGTTCAGTTTCTGAAGTTGTTAGTAACGGCAAGTC
CAACGTTGCTGCACCACCACCAATCTCTTGAATGGTAAGATGCATTATCT
TACAGTGAAGAATCCATctatcaaatttctttttatcgATATCCTTGCTC
GCCTGTTGCGCGTTTTCGTCATAAAATGCTTGCATTTCCTTTGTAAACCA
ATAATCGGGTCGTTCATTGGTCAGATTCTCCAAAGTATTTTGCATTGTTG
CCATTCCTATCTCGTAATCAAGGATGTTGACCGGAGAGCTTTTAGCATAT
TGATTTGAATTGAATACTTGTGGGATTATGACAGGTGCCCGCTGTTTTGG
ATCGTACAAGGAAGTTTCACCGTATTCCCGTTGGAGTAGATACTCAGCAG
CCGTCAGGGGGTCTGCACAATGGTAACCATTCCCAAGGTTGTACTTCTTG
TGCTGTGACTGTAGTACACTTTGGGAGTGTCGCAAGATGTTTTGGTGCAA
TGATGTTTTGTTGGTACATTTGTTTTGGTTGATGAGCTCTGGTCTCAAAC
CAGATAGTTTTTGTTGCAGAAGACTTGCTTCCATTTTCCTCTTTGTTTTA
GTGTCTTTTTTA Run BLAST on NCBI transcript from alignment at sc0000313:135086..136751- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018937 ID=TCONS_00018937|Name=TCONS_00018937|organism=Clytia hemisphaerica|type=transcript|length=1666bp|location=Sequence derived from alignment at sc0000313:135086..136751- (Clytia hemisphaerica)
TACCTTCTCAGCATTGTAATTCAATCCTATAATGCCCACTCCATGCTTTT
CTTCTAAGTCTAGCTTCAAACGCCACTCAAGTAAACTAGTTGGCTCAACG
TGCCAGCAAACATACATNTTCAAACGCCATTCAAGTAAACTAGTTGGCTC
AACGCGCCAGCAAACATACACAATGTTGCCAGCGTAATGTGGATCTCTGC
TCAGTTGTTTTGCTTTCTCCTCCAGTAAGAAGCTTTTTCCTGTTCCATAA
CCACCCCTGATGAGAAGTTTTCGAAGGCGTGGCTCGTTGGGATTCATTAT
ATGCATTTGAGTGCTGGAATAAAAAACAATATTTTCAACGGTTGAAATAG
ATTCGATGGCGTTTGACGTATACTCGACCCAATTTGAGGTGGTTACTGGA
GCACTTTTTGACACGTGGATTGTGAAGATGATCATTCTTAACACATTTTT
GACTTGATTTAACGATGAAACGGTGCATGGTAATTCAGGATATTGTGTGA
AAATCCCCAAAAGCCATGATTTGATGTTAGTTTGAAAGGTAATGTAGTGT
TGTGTTTGATTGAGATTATGATGATTTTTCTCGACACAGATAACTGGTAG
GAAAGTCCACCAGTTGTCAAGTTGATCACCAAGTTTCTCGTCGAATATTT
GTTTGTAAGTCTCCAGCTGTCCGATTGCATCCATTGTTGCTGACGATTGG
CGTTTGATTTCAACAGCGATGATCAGTTTTCTTGTCCATGAGAGGAGAAG
GAAATCAAACTCTTGATGAAATTTCTTTTTAATGTTAGTCATGAATTTAG
CAGATTGTAGGATGACAGTATCGTGAAGAATTTCATCGGATTGTAATGCT
AAAAATTGATTCCGAAACCAATCTTCAGCATTTTCACCTAATTCTGCCAG
GTTCAATTCAAAATACCATAAGGCTATAGGGTCAGTTGGTGGATTACTCT
TAATCAGATTTTCAATTTTTCGACGCAAGTTTGCCACACTACTTTGGAGC
ATGTTTTTTAACTTGGATGATGATGGTGGTGAGTTTGAAGCAAGCTCTGC
AAGACAAGCTCTGGCAAAAGGTTCAGTTTCTGAAGTTGTTAGTAACGGCA
AGTCCAACGTTGCTGCACCACCACCAATCTCTTGAATGGTAAGATGCATT
ATCTTACAGTGAAGAATCCATCTATCAAATTTCTTTTTATCGATATCCTT
GCTCGCCTGTTGCGCGTTTTCGTCATAAAATGCTTGCATTTCCTTTGTAA
ACCAATAATCGGGTCGTTCATTGGTCAGATTCTCCAAAGTATTTTGCATT
GTTGCCATTCCTATCTCGTAATCAAGGATGTTGACCGGAGAGCTTTTAGC
ATATTGATTTGAATTGAATACTTGTGGGATTATGACAGGTGCCCGCTGTT
TTGGATCGTACAAGGAAGTTTCACCGTATTCCCGTTGGAGTAGATACTCA
GCAGCCGTCAGGGGGTCTGCACAATGGTAACCATTCCCAAGGTTGTACTT
CTTGTGCTGTGACTGTAGTACACTTTGGGAGTGTCGCAAGATGTTTTGGT
GCAATGATGTTTTGTTGGTACATTTGTTTTGGTTGATGAGCTCTGGTCTC
AAACCAGATAGTTTTTGTTGCAGAAGACTTGCTTCCATTTTCCTCTTTGT
TTTAGTGTCTTTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018937-exon-sc0000313-1575043694:136637..136751 | TCONS_00018937-exon-sc0000313-1575043694:136637..136751 | Clytia hemisphaerica | exon |
| TCONS_00018937-exon-sc0000313-1575043694:135086..136582 | TCONS_00018937-exon-sc0000313-1575043694:135086..136582 | Clytia hemisphaerica | exon |
| TCONS_00018937-exon-sc0000313-1510915933:136637..136751 | TCONS_00018937-exon-sc0000313-1510915933:136637..136751 | Clytia hemisphaerica | exon |
| TCONS_00018937-exon-sc0000313-1510915933:135086..136582 | TCONS_00018937-exon-sc0000313-1510915933:135086..136582 | Clytia hemisphaerica | exon |
| TCONS_00018937-exon-sc0000313-1491911889:136637..136751 | TCONS_00018937-exon-sc0000313-1491911889:136637..136751 | Clytia hemisphaerica | exon |
| TCONS_00018937-exon-sc0000313-1491911889:135086..136582 | TCONS_00018937-exon-sc0000313-1491911889:135086..136582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000313 | supercontig | sc0000313:135086..136751 - |
Blast
The following BLAST results are available for this feature:
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