TCONS_00018950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018950
Unique NameTCONS_00018950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018950 ID=TCONS_00018950|Name=TCONS_00018950|organism=Clytia hemisphaerica|type=transcript|length=173bp
TCATTTTCCTCTTAATCAATATGGCGGCCATTATTGTGGTTCTGAGTAAC
ATATTGATCGGTCAAATCAGTGCACGTTACGAAGACGCTGCAAAAGATGC
GAAAATCCAAAGTGACATTGCAAAAGCGAAAGTCATCTGTAAAATCGAGA
AAAGCCGATTCGTTTGGAGGGTA
Run BLAST on NCBI

transcript from alignment at sc0000313:102512..102684

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018950 ID=TCONS_00018950|Name=TCONS_00018950|organism=Clytia hemisphaerica|type=transcript|length=173bp|location=Sequence derived from alignment at sc0000313:102512..102684 (Clytia hemisphaerica)
TACCCTCCAAACGAATCGGCTTTTCTCGATTTTACAGATGACTTTCGCTT
TTGCAATGTCACTTTGGATTTTCGCATCTTTTGCAGCGTCTTCGTAACGT
GCACTGATTTGACCGATCAATATGTTACTCAGAACCACAATAATGGCCGC
CATATTGATTAAGAGGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010620XLOC_010620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018950-exon-sc0000313-1491911889:102512..102684TCONS_00018950-exon-sc0000313-1491911889:102512..102684Clytia hemisphaericaexon
TCONS_00018950-exon-sc0000313-1510915933:102512..102684TCONS_00018950-exon-sc0000313-1510915933:102512..102684Clytia hemisphaericaexon
TCONS_00018950-exon-sc0000313-1575043694:102512..102684TCONS_00018950-exon-sc0000313-1575043694:102512..102684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:102512..102684 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.54195	0	27.2907	19.8716	7.95005	0	2.38954	14.1371	3.13721	8.14505	2.67854	2.87448	0	3.62954	5.0144	5.24721	0	0	0	0	5.06456	4.52	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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