TCONS_00018971 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018971
Unique Name	TCONS_00018971
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2981

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000314:185316..191541+

transcript sequence

>TCONS_00018971 ID=TCONS_00018971|Name=TCONS_00018971|organism=Clytia hemisphaerica|type=transcript|length=2981bp
TTTAGCCTTTGATTTTCTTtagttttgtataaaaaatgaatatattGTGG
CAAAATCGACCTTGATATtgtgaacataaaatattaggAAATTAATTCAA
AGTAGAATGAAGGATCGCTTAGCCCAACTGCGAGATCTGCAGGTGCAGTC
AGACCTTCCGCCTGAATATGAGGAGACAAACTTATCGGAAGAAGACAAAA
CAAACCCATTCCTAAATGACTTTTTCTCCCAGATCGAAGTTATACAACAA
GACATCAGGGATATCCAAGATAATGTGCAAGAAATCAAGAAGAAACAGAG
TGCTATCCTCTCTGCTCCTCAATCAGGGGATAAGATGAAAGAGGAACTAG
AGCAATTTATGGCTGATATCACCAGATCTGCAAACAGAGTCAAACAAATC
TTGAAAGGTATGGAAAAGAGCATCAAGGACCAAGAAAATAGCAATCAAGG
AAATTTCGCTGACATCAGAATCAAGAAATGCCAGCATGCAGCATTGTCAA
GGGAATTTGTGGAGGTGATGACAGAAtacaataaaattcaaaacgacTAC
AGAGACAAATGTAAAAATCGTATCAAAAGACAACTTGAAATTACTAATAC
TGAGAAGTCGTATACTGATGAAGAGGTAGAGGAGATGATCGAGAGTAAGA
ACCCTGCTATCTTCACTCAAGGAATCATTACAGACACACAACAGGCTAAA
CAATCACTTCGTGAAATTGAAGCCCGTCACAATGATATTATCAAGTTAGA
AACTAGTATAAGGGAATTGCATGAAATGTTCACTGACATGGCCATTCTTG
TGCAAAGTCAGGGGGAGATGATCGATCGTATAGAATATAATGTGGAGCAA
GCGGCAGAGTACGTACAACGAGCTGTTGTTGACACCAAAAAAGCTGTTCG
TTATCAGAGTAAAGCTAGAAGGaaaaaaattatgattgcAATCTGTCTGG
CTGTCatggttttgattttggcacTGATTATTTACTTTAGTGTAGCATAA
AATCTCACTTGTGAACAATCTAGCTTTCACTTTTGGCTGCATTGACATCA
TAATTATATGGATGGTAGCACAAACGCAGGCAGGCCGCAGACAAATGGAT
ACAGTCTGCAGTATAACATAAGGGGTCCCAATTTTTTACATCTACAAAGA
TTTCGAACTAAATAGTTTGTAGTACACAATGTATTTACAAATGCTTTTAT
TTAGTGGAAAAGGGTAATACAGAAGAGATGTATTGTATATTTTGATGGTA
CAATTTATATAATTGATGTTATGTATTACATGATATTATGCTTCTATTGT
GATATAAGTATAGTTCTCAAATTTTGTAACACCACATTTTCTAGCTTGCA
CCACCAATGAATATTAGAATGCACAAACTATGGAAGGTAATAAGAAGTAC
ATCAGAATGGTTGAGGATGATAACAACGATAAGCATTCTGTGTGACTTAC
AGTGATTCGTATACGTAATAATGATTTTGAACTACTATAGTTTTGAAACA
TACCGAACTTAGTGAGGGGTTGTGATTACAAAAGGTAAGGTTATGAAAGA
TTATGTGCTCCACTGTAGGCTAAATGTAATCAGCATCTAGTAATAAGTAT
AAGCACTCTTACAAtcgcaatttttgaaaaactgacaTTACAACAGACGA
TTAGgggagtcaacattgagaaaacaCGTAGATTTTTTTTGTAGTCAGTA
TAGTTGTAACAtacttttttttctcattttactTGACTTTAATAATAGCT
ATCATTAATCTCCTCTATAAAAGAACAgtaatgactttttttttatttta
acatattttttctGATTATCCCCATAATTATTATATTCTATTGTTCTAGA
GCACCAAATTTCTATACCCACCGCATTTTCACGAGTAGAATTTCATTCAA
TTTATTGATCTTTCATGTTTTGACATAGTGATACCGTAACTTAGTGTAAT
GCCGACGTACCTTGTTTAATTCCGTCATAGCAATTATCTGGTCCTTTAAA
TGTTTATGAATAAATCCTTCTGAGAAGCTGTTAAAGAAATCACTCTAACT
ATTCTAAAtactttgcagaccagataaCGGCTATgacggaattagacaag
gtatgtcgaCATAAGACGAATTCACGGTAAGTCTCAGTAAGGACAGTGGA
GATTTTAACTAGATTTTTGTAAGCCTTTTTCCATACCTTATCTGTATTCG
ATCTTTTCATCTATTGGAATAAACACGAGCTTTTATTATTAACCTGATCA
ACCTATTTAGTTTTAGTAATTACAATTACATGTACTAGACATTTTGATTG
ATAGCGGAAATACCAGCAGCTTTACTCTTCAAGTTACTCAATAACGACTA
TAggagatttgaaattttattttgtagatTCAATATAATGTATATTTTTC
ACATGAGAGAAGATTGAGGGAAAGGCTATGTGATTCCAACCAAAagaccc
ctgtgtcacagacccgctgaggCCTTAGCCCCagtggaaaatttggcaaa
aatttcgttcccggtgggaaaaatttcctaaattccagccccactgagaa
attgactttgatttcatccccattcgaaattcatcgTTCATGCAAATTGc
aatccaaaaccatccccactggatttggaacaaaataaatttttatcccc
gctgtaagaaaaagtttcaccggggctgtgagacagtggTGTACCAAACA
AGACAGCCAAATCTTTCTTGACGATCTTACTTCTCTTTTCTCTAATCTCT
CATGGGAGTAATCAATgtaataattgtttttttgtatgTTTACTATATTA
TTGTTTATTATGAATTTATGAAGAatactttttcgttttttgtttgtttt
ctttgatttacaAAATTGAAAGAGATTGAGGGGAAAGCTAAACATTCTTA
ATTAAAGAGAATtgactacatgtttttttttctataagcataacgtttat
aagcatatacaggCTCAGTTATTGGTTCCCT

Run BLAST on NCBI

transcript from alignment at sc0000314:185316..191541+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018971 ID=TCONS_00018971|Name=TCONS_00018971|organism=Clytia hemisphaerica|type=transcript|length=6226bp|location=Sequence derived from alignment at sc0000314:185316..191541+ (Clytia hemisphaerica)
TTTAGCCTTTGATTTTCTTtagttttgtataaaaaatgaatatattGTGG
CAAAATCGACCTTGATATtgtgaacataaaatattaggAAATTAATTCAA
AGTAGAATGAAGGATCGCTTAGCCCAACTGCGAGATGTAAGTATGCTCAA
ACGGAGAATTAAAGTCGTTTTAATGAATCATAAGTTGAAGAAATATGATG
TTTATGAAATGTTATTATTTCTAtgtcaactttttttatcaaaaacaaat
GATATAGTCTATGAGGAAACCTTTCACAAAATGAGAATTCTTTTGCCATG
GTAAGAATACTTAagcctcaaaatttcaaaaactaagaTAATCCCAGACT
GAATGAaagtttactggttcttatatatgTATTCTCTgcaagaaaaaatc
tttcatgtTATTTGCTTTTATACACGATTTCACTTTGTTTTTGTGAGAAA
GGAGTGAAACCTTACTTTTTTTCATATCAACAGATAGGAATAGGTGGATT
AGGCTCTACTGCTGCTACTAAGAgacatgattttttttataagaacaatg
aggttcaaaaaagcctgaaaataaTTAAGAACAAACCTCAGTCTGGAATG
GCTGAATTTCAAGCAAATAAAGGGTCATAATAATATAGACAGGgtataaa
gcctaaaatacatcaatttttctttaaaaataagaacagcccaCCCTCAA
CAATTGATTTGGTTCTTGTAGAAAAACTATTACGTTAAGATtatactttt
tcaaaatgttttacaaattttacatGCGATATAAGGGGCTAGAATGGCGA
GGTATTTTCTCATTTAAATGTACCATATATTGTATAATAATCCACCTATT
CTTGACgatattgtaaaaaaattgactGGCAGAAAAAACCAACTATTTTT
ACATCTGGCCTAATCTGTAGAAATTGTTCCTTTAGTTTTGTATAAAAATG
AATATAATGTTTGAAGCAGATTTCTTAGAAATTCTATAGTTCAAATTGTT
TAAACcaagattttgtttgaatttcagCTGCAGGTGCAGTCAGACCTTCC
GCCTGAATATGAGGAGACAAACTTATCGGAAGAAGACAAAACAAACCCAT
TCCTAAATGACTTTTTCTCCCAGGTAATAATTGTGTACATATCCCCATAC
TTGCTGATATAGTGTTTTGAGAGATTTCATATATACTGCTCTTCTCACAA
AATATTTGGATGTCAAACTCTTAGTAAGTAATACCAACTTTCTAATTTTT
CacacaattttcaataaattctcTCTCTAAGATCGAAGTTATACAACAAG
ACATCAGGGATATCCAAGATAATGTGCAAGAAATCAAGAAGAAACAGAGT
GCTATCCTCTCTGCTCCTCAATCAGGGGATAAGATGAAAGAGGAACTAGA
GCAATTTATGGCTGATATCACCAGATCTGCAAACAGAGTCAAACAAATCT
TGAAAGGTTAggcaaaaaagaattttaataattttatctttttcttttta
tgaaaatcaacactgtttgatttgaagttttcatTCATAACATTGTTATA
GAAAAATGATGTTTCAACAGTAAAGAATCGTTGGTTATATTTATCAATAG
GTATGGAAAAGAGCATCAAGGACCAAGAAAATAGCAATCAAGGAAATTTC
GCTGACATCAGAATCAAGAAATGCCAGGTACAATTTTGCTTACTTAAGTG
TGTTAAGTAACTTGAAAAGGGTgttcaattttcgattttcaagactttta
aaattaaattttttcagaaTCTTAATGCTAATTTAGGATCCTATATTAAG
TGAAAGAAAGGTgatttattgccgacccaaaaaaaaaTACCAGCGTATTg
ggattggtcgagagcatccaAATATTTaagatatttcatatttctctagc
TTTTTTTCTTCCACATAGCATGCAGCATTGTCAAGGGAATTTGTGGAGGT
GATGACAGAAtacaataaaattcaaaacgacTACAGAGACAAATGTAAAA
ATCGTATCAAAAGACAACTTGAAATTACTAATAGTAAGTCTGATGATTTG
GTaatgaactttttaaaaacttttacacTGGGAAGAATTCGAACAACTAG
TTATTCGAAATAAGTATAGCTCAAGaattttctttactcaaaattttgaa
tggcTCAAAAAGTTGTGAGTGGTTTTAATCAGCCCAGATAAAAAGTTTAG
CTGCAAAATGTTTTGGATAATAAACAAGGCTGGATAAGCATATTCATGCC
GTGGATAAAAATACTGATTCCAAAAGTTTGGTAATAACAGGTTTGGATAA
AGGACACGGATGGATTAAGTGTATTCTCACACCATGTTGGATCGAAAAAG
GATCAGATTAGTATACCTCTTTTTCAGAAaagtaattttcttttttcttt
taacagCTGAGAAGTCGTATACTGATGAAGAGGTAGAGGAGATGATCGAG
AGTAAGAACCCTGCTATCTTCACTCAAGGAGTAAGTGTCTTTAGATCTTC
ATACTTTTTCTAGGTGACGTCTAGTTAGCATAGACTGTATTGTGTAGtat
ctttaaaagtttttaatatcATACCAAAGACCTTAAAAATGGTACTTGAA
TGTCTCTCTGCTTTAAACACTGCAGTTAAAGATTAGTTAAAGAGAATgtt
caagggtaagtggagaaatcaaGGGTAGAGTGGAAAAGGGAGCCTGCCCA
TCCCTCCCCCACCCCAACAACGGTCGCACATTACACTCATTTAATATCTT
AGATTAACTtcagtttgaaatattttttgaaggaCTTATTTTGCAGTAAT
TCTGGTAACACTACTtttccttttcaaatttcatcttACTCATTGACAAT
GTTTTCTTGTCTTTATTATTTTCAGATCATTACAGACACACAACAGGCTA
AACAATCACTTCGTGAAATTGAAGCCCGTCACAATGATATTATCAAGTTA
GAAACTAGTATAAGGGTATGTTATTGGTATTGTTACTCATCTATCACTCT
TCTTTTTTCTGTCAAATTATAAaacaccttttttcaaaaaccaaaaaaga
aattaaatataATGATAAGTGCATACGTGATGCTTACATGTCTTAActac
tttttttgtttactcgCACTAACTTTAATCTTCTAAACTCTGTGTTTTCA
TTTCCAGGAATTGCATGAAATGTTCACTGACATGGCCATTCTTGTGCAAA
GTCAGGTATCCCTTTATTTTATCCTATTTTAGCAAGAATaagttatatat
atatatattaattATACTTTAATCATTCACTTTTTACACGAAAAGCCTGA
ATAGTCATAATTGAGAGATATAGTCCTTCCGATAAACGGAACAGGCCCTA
TCCAGGACAACATTCGCTATCATAGGATGGGGAAATCACTGCGCTTACCT
GACTCAAGGGAACTTTGTGCTTGTGATAAATGGAGCAAACAACTCGGGGA
GGACAGCTTCTCGTTGCATGGTCAAACCCTGAAAAGTATTAGCAACCATA
AAGCCAGACATCTTAATTACTGTCTAACGTTCTGTCTTATTTTGATTGCA
ATTTGTTTACTTTAGGGGGAGATGATCGATCGTATAGAATATAATGTGGA
GCAAGCGGCAGAGTACGTACAACGAGCTGTTGTTGACACCAAAAAAGCTG
TTCGTTATCAGAGTAAAGCTAGAAGGGTACGTTTCATAAATGTTTTATTC
TATGGTGATGGTCTTTGAAACAACATAGCAGCTGCTATGTGGACATCCTC
TTAGAAATTCATTTTAAAGATGCTTATAAAAGTAGTAGCAGCATGTGATG
TAAAGACAGCGGCAAAATCCATTTTATTCCTAATTGcttttcttggattt
ttttattGACTCGAAACTATCCATCTTCATCTATCTATTAATTCGATATG
TAttcgatattttattttttattttcatttcttatcttttttcttccttt
tagaaaaaaattatgattgcAATCTGTCTGGCTGTCatggttttgatttt
ggcacTGATTATTTACTTTAGTGTAGCATAAAATCTCACTTGTGAACAAT
CTAGCTTTCACTTTTGGCTGCATTGACATCATAATTATATGGATGGTAGC
ACAAACGCAGGCAGGCCGCAGACAAATGGATACAGTCTGCAGTATAACAT
AAGGGGTCCCAATTTTTTACATCTACAAAGATTTCGAACTAAATAGTTTG
TAGTACACAATGTATTTACAAATGCTTTTATTTAGTGGAAAAGGGTAATA
CAGAAGAGATGTATTGTATATTTTGATGGTACAATTTATATAATTGATGT
TATGTATTACATGATATTATGCTTCTATTGTGATATAAGTATAGTTCTCA
AATTTTGTAACACCACATTTTCTAGCTTGCACCACCAATGAATATTAGAA
TGCACAAACTATGGAAGGTAATAAGAAGTACATCAGAATGGTTGAGGATG
ATAACAACGATAAGCATTCTGTGTGACTTACAGTGATTCGTATACGTAAT
AATGATTTTGAACTACTATAGTTTTGAAACATACCGAACTTAGTGAGGGG
TTGTGATCACAGATTGGTATtaaaagcccgaaaggctagatgtcgtgctt
ttgctgaaaagtgtgctgtGGCTACGTATGAAATCCTAGCTAGGttacgt
gacattacaatagaatttcagcgcttgaccaatcagtaGTTTCGCGCACT
TTTTGTTGCCtgtgatggcttaaagcacgacatctagcccttcgggcttt
ttaTAAATCTGAGGTTGTGATTACAAAAGGTAAGGTTATGAAAGATTATG
TGCTCCACTGTAGGCTAAATGTAATCAGCATCTAGTAATAAGTATAAGCA
CTCTTACAAtcgcaatttttgaaaaactgacaTTACAACAGACGATTAGg
ggagtcaacattgagaaaacaCGTAGATTTTTTTTGTAGTCAGTATAGTT
GTAACAtacttttttttctcattttactTGACTTTAATAATAGCTATCAT
TAATCTCCTCTATAAAAGAACAgtaatgactttttttttattttaacata
ttttttctGATTATCCCCATAATTATTATATTCTATTGTTCTAGAGCACC
AAATTTCTATACCCACCGCATTTTCACGAGTAGAATTTCATTCAATTTAT
TGATCTTTCATGTTTTGACATAGTGATACCGTAACTTAGTGTAATGCCGA
CGTACCTTGTTTAATTCCGTCATAGCAATTATCTGGTCCTTTAAATGTTT
ATGAATAAATCCTTCTGAGAAGCTGTTAAAGAAATCACTCTAACTATTCT
AAAtactttgcagaccagataaCGGCTATgacggaattagacaaggtatg
tcgaCATAAGACGAATTCACGGTAAGTCTCAGTAAGGACAGTGGAGATTT
TAACTAGATTTTTGTAAGCCTTTTTCCATACCTTATCTGTATTCGATCTT
TTCATCTATTGGAATAAACACGAGCTTTTATTATTAACCTGATCAACCTA
TTTAGTTTTAGTAATTACAATTACATGTACTAGACATTTTGATTGATAGC
GGAAATACCAGCAGCTTTACTCTTCAAGTTACTCAATAACGACTATAgga
gatttgaaattttattttgtagatTCAATATAATGTATATTTTTCACATG
AGAGAAGATTGAGGGAAAGGCTATGTGATTCCAACCAAAagacccctgtg
tcacagacccgctgaggCCTTAGCCCCagtggaaaatttggcaaaaattt
cgttcccggtgggaaaaatttcctaaattccagccccactgagaaattga
ctttgatttcatccccattcgaaattcatcgTTCATGCAAATTGcaatcc
aaaaccatccccactggatttggaacaaaataaatttttatccccgctgt
aagaaaaagtttcaccggggctgtgagacagtggTGTACCAAACAAGACA
GCCAAATCTTTCTTGACGATCTTACTTCTCTTTTCTCTAATCTCTCATGG
GAGTAATCAATgtaataattgtttttttgtatgTTTACTATATTATTGTT
TATTATGAATTTATGAAGAatactttttcgttttttgtttgttttctttg
atttacaAAATTGAAAGAGATTGAGGGGAAAGCTAAACATTCTTAATTAA
AGAGAATtgactacatgtttttttttctataagcataacgtttataagca
tatacaggCTCAGTTATTGGTTCCCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010637	XLOC_010637	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000314	supercontig	sc0000314:185316..191541 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.4867	19.8484	5.8594	4.86198	44.3301	26.9466	39.8045	41.5219	41.8572	38.2606	25.2238	26.8791	28.0338	23.2439	18.0349	17.0177	36.2777	37.4064	24.0864	30.9312	35.6527	35.7769	22.4233	25.0435	17.3916	21.2196	30.475	25.9015	32.824	32.4553

Blast

[Close]

BLAST of TCONS_00018971 vs. Swiss-Prot (Human)
Match: STX1B (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.885e-90
Identity = 154/276 (55.80%), Postives = 208/276 (75.36%), Query Frame = 2

Query:  107 MKDRLAQLRDLQVQSDLPPEYEETNLSEEDKTNPFLNDFFSQIEVIQQDIRDIQDNVQEIKKKQSAILSAPQSGDKMKEELEQFMADITRSANRVKQILKGMEKSIKDQENSNQGNFADIRIKKCQHAALSREFVEVMTEYNKIQNDYRDKCKNRIKRQLEITNTEKSYTDEEVEEMIESKNPAIFTQGIITDTQQAKQSLREIEARHNDIIKLETSIRELHEMFTDMAILVQSQGEMIDRIEYNVEQAAEYVQRAVVDTKKAVRYQSKARRKKIM 934
            MKDR  +LR  +   D      E  +   D+ + F+++FF Q+E I+  I  + ++V+++KK+ SAIL+AP   +K K+ELE   ADI ++AN+V+  LK +E+SI+ +E  N+ + AD+RI+K QH+ LSR+FVEVMTEYN  Q+ YRD+CK+RI+RQLEIT   ++ T+EE+E+M+ES   AIFT  I  D+Q  KQ+L EIE RHN+IIKLETSIRELH+MF DMA+LV+SQGEMIDRIEYNVE + +YV+RAV DTKKAV+YQSKARRKKIM
Sbjct:    1 MKDRTQELRSAKDSDD------EEEVVHVDR-DHFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSS-ADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITG--RTTTNEELEDMLESGKLAIFTDDIKMDSQMTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRKKIM 266

The following BLAST results are available for this feature:

BLAST of TCONS_00018971 vs. Swiss-Prot (Human)

BLAST of TCONS_00018971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STX1B	1.885e-90	55.80	Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1	[more]

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TCONS_00018971 (transcript) - C. hemisphaerica