TCONS_00018972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018972
Unique NameTCONS_00018972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018972 ID=TCONS_00018972|Name=TCONS_00018972|organism=Clytia hemisphaerica|type=transcript|length=2773bp
tgaatatattGTGGCAAAATCGACCTTGATATtgtgaacataaaatatta
ggAAATTAATTCAAAGTAGAATGAAGGATCGCTTAGCCCAACTGCGAGAT
CTGCAGGTGCAGTCAGACCTTCCGCCTGAATATGAGGAGACAAACTTATC
GGAAGAAGACAAAACAAACCCATTCCTAAATGACTTTTTCTCCCAGATCG
AAGTTATACAACAAGACATCAGGGATATCCAAGATAATGTGCAAGAAATC
AAGAAGAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGGGATAAGAT
GAAAGAGGAACTAGAGCAATTTATGGCTGATATCACCAGATCTGCAAACA
GAGTCAAACAAATCTTGAAAGGTATGGAAAAGAGCATCAAGGACCAAGAA
AATAGCAATCAAGGAAATTTCGCTGACATCAGAATCAAGAAATGCCAGCA
TGCAGCATTGTCAAGGGAATTTGTGGAGGTGATGACAGAAtacaataaaa
ttcaaaacgacTACAGAGACAAATGTAAAAATCGTATCAAAAGACAACTT
GAAATTACTAATACTGAGAAGTCGTATACTGATGAAGAGGTAGAGGAGAT
GATCGAGAGTAAGAACCCTGCTATCTTCACTCAAGGAATCATTACAGACA
CACAACAGGCTAAACAATCACTTCGTGAAATTGAAGCCCGTCACAATGAT
ATTATCAAGTTAGAAACTAGTATAAGGGAATTGCATGAAATGTTCACTGA
CATGGCCATTCTTGTGCAAAGTCAGGGGGAGATGATCGATCGTATAGAAT
ATAATGTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTGTTGACACC
AAAAAAGCTGTTCGTTATCAGAGTAAAGCTAGAAGGaaaaaaattatgat
tgcAATCTGTCTGGCTGTCatgCTTGCACCACCAATGAATATTAGAATGC
ACAAACTATGGAAGGTAATAAGAAGTACATCAGAATGGTTGAGGATGATA
ACAACGATAAGCATTCTGTGTGACTTACAGTGATTCGTATACGTAATAAT
GATTTTGAACTACTATAGTTTTGAAACATACCGAACTTAGTGAGGGGTTG
TGATCACAGATTGGTATtaaaagcccgaaaggctagatgtcgtgcttttg
ctgaaaagtgtgctgtGGCTACGTATGAAATCCTAGCTAGGttacgtgac
attacaatagaatttcagcgcttgaccaatcagtaGTTTCGCGCACTTTT
TGTTGCCtgtgatggcttaaagcacgacatctagcccttcgggcttttta
TAAATCTGAGGTTGTGATTACAAAAGGTAAGGTTATGAAAGATTATGTGC
TCCACTGTAGGCTAAATGTAATCAGCATCTAGTAATAAGTATAAGCACTC
TTACAAtcgcaatttttgaaaaactgacaTTACAACAGACGATTAGggga
gtcaacattgagaaaacaCGTAGATTTTTTTTGTAGTCAGTATAGTTGTA
ACAtacttttttttctcattttactTGACTTTAATAATAGCTATCATTAA
TCTCCTCTATAAAAGAACAgtaatgactttttttttattttaacatattt
tttctGATTATCCCCATAATTATTATATTCTATTGTTCTAGAGCACCAAA
TTTCTATACCCACCGCATTTTCACGAGTAGAATTTCATTCAATTTATTGA
TCTTTCATGTTTTGACATAGTGATACCGTAACTTAGTGTAATGCCGACGT
ACCTTGTTTAATTCCGTCATAGCAATTATCTGGTCCTTTAAATGTTTATG
AATAAATCCTTCTGAGAAGCTGTTAAAGAAATCACTCTAACTATTCTAAA
tactttgcagaccagataaCGGCTATgacggaattagacaaggtatgtcg
aCATAAGACGAATTCACGGTAAGTCTCAGTAAGGACAGTGGAGATTTTAA
CTAGATTTTTGTAAGCCTTTTTCCATACCTTATCTGTATTCGATCTTTTC
ATCTATTGGAATAAACACGAGCTTTTATTATTAACCTGATCAACCTATTT
AGTTTTAGTAATTACAATTACATGTACTAGACATTTTGATTGATAGCGGA
AATACCAGCAGCTTTACTCTTCAAGTTACTCAATAACGACTATAggagat
ttgaaattttattttgtagatTCAATATAATGTATATTTTTCACATGAGA
GAAGATTGAGGGAAAGGCTATGTGATTCCAACCAAAagacccctgtgtca
cagacccgctgaggCCTTAGCCCCagtggaaaatttggcaaaaatttcgt
tcccggtgggaaaaatttcctaaattccagccccactgagaaattgactt
tgatttcatccccattcgaaattcatcgTTCATGCAAATTGcaatccaaa
accatccccactggatttggaacaaaataaatttttatccccgctgtaag
aaaaagtttcaccggggctgtgagacagtggTGTACCAAACAAGACAGCC
AAATCTTTCTTGACGATCTTACTTCTCTTTTCTCTAATCTCTCATGGGAG
TAATCAATgtaataattgtttttttgtatgTTTACTATATTATTGTTTAT
TATGAATTTATGAAGAatactttttcgttttttgtttgttttctttgatt
tacaAAATTGAAAGAGATTGAGGGGAAAGCTAAACATTCTTAATTAAAGA
GAATtgactacatgtttttttttctataagcataacgtttataagcatat
acaggCTCAGTTATTGGTTCCCT
Run BLAST on NCBI

protein sequence of TCONS_00018972-protein

>TCONS_00018972-protein ID=TCONS_00018972-protein|Name=TCONS_00018972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MKDRLAQLRDLQVQSDLPPEYEETNLSEEDKTNPFLNDFFSQIEVIQQDI
RDIQDNVQEIKKKQSAILSAPQSGDKMKEELEQFMADITRSANRVKQILK
GMEKSIKDQENSNQGNFADIRIKKCQHAALSREFVEVMTEYNKIQNDYRD
KCKNRIKRQLEITNTEKSYTDEEVEEMIESKNPAIFTQGIITDTQQAKQS
LREIEARHNDIIKLETSIRELHEMFTDMAILVQSQGEMIDRIEYNVEQAA
EYVQRAVVDTKKAVRYQSKARRKKIMIAICLAVMLAPPMNIRMHKLWKVI
RSTSEWLRMITTISILCDLQ
Run BLAST on NCBI

transcript from alignment at sc0000314:185352..191541+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018972 ID=TCONS_00018972|Name=TCONS_00018972|organism=Clytia hemisphaerica|type=transcript|length=6190bp|location=Sequence derived from alignment at sc0000314:185352..191541+ (Clytia hemisphaerica)
tgaatatattGTGGCAAAATCGACCTTGATATtgtgaacataaaatatta
ggAAATTAATTCAAAGTAGAATGAAGGATCGCTTAGCCCAACTGCGAGAT
GTAAGTATGCTCAAACGGAGAATTAAAGTCGTTTTAATGAATCATAAGTT
GAAGAAATATGATGTTTATGAAATGTTATTATTTCTAtgtcaactttttt
tatcaaaaacaaatGATATAGTCTATGAGGAAACCTTTCACAAAATGAGA
ATTCTTTTGCCATGGTAAGAATACTTAagcctcaaaatttcaaaaactaa
gaTAATCCCAGACTGAATGAaagtttactggttcttatatatgTATTCTC
TgcaagaaaaaatctttcatgtTATTTGCTTTTATACACGATTTCACTTT
GTTTTTGTGAGAAAGGAGTGAAACCTTACTTTTTTTCATATCAACAGATA
GGAATAGGTGGATTAGGCTCTACTGCTGCTACTAAGAgacatgatttttt
ttataagaacaatgaggttcaaaaaagcctgaaaataaTTAAGAACAAAC
CTCAGTCTGGAATGGCTGAATTTCAAGCAAATAAAGGGTCATAATAATAT
AGACAGGgtataaagcctaaaatacatcaatttttctttaaaaataagaa
cagcccaCCCTCAACAATTGATTTGGTTCTTGTAGAAAAACTATTACGTT
AAGATtatactttttcaaaatgttttacaaattttacatGCGATATAAGG
GGCTAGAATGGCGAGGTATTTTCTCATTTAAATGTACCATATATTGTATA
ATAATCCACCTATTCTTGACgatattgtaaaaaaattgactGGCAGAAAA
AACCAACTATTTTTACATCTGGCCTAATCTGTAGAAATTGTTCCTTTAGT
TTTGTATAAAAATGAATATAATGTTTGAAGCAGATTTCTTAGAAATTCTA
TAGTTCAAATTGTTTAAACcaagattttgtttgaatttcagCTGCAGGTG
CAGTCAGACCTTCCGCCTGAATATGAGGAGACAAACTTATCGGAAGAAGA
CAAAACAAACCCATTCCTAAATGACTTTTTCTCCCAGGTAATAATTGTGT
ACATATCCCCATACTTGCTGATATAGTGTTTTGAGAGATTTCATATATAC
TGCTCTTCTCACAAAATATTTGGATGTCAAACTCTTAGTAAGTAATACCA
ACTTTCTAATTTTTCacacaattttcaataaattctcTCTCTAAGATCGA
AGTTATACAACAAGACATCAGGGATATCCAAGATAATGTGCAAGAAATCA
AGAAGAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGGGATAAGATG
AAAGAGGAACTAGAGCAATTTATGGCTGATATCACCAGATCTGCAAACAG
AGTCAAACAAATCTTGAAAGGTTAggcaaaaaagaattttaataatttta
tctttttctttttatgaaaatcaacactgtttgatttgaagttttcatTC
ATAACATTGTTATAGAAAAATGATGTTTCAACAGTAAAGAATCGTTGGTT
ATATTTATCAATAGGTATGGAAAAGAGCATCAAGGACCAAGAAAATAGCA
ATCAAGGAAATTTCGCTGACATCAGAATCAAGAAATGCCAGGTACAATTT
TGCTTACTTAAGTGTGTTAAGTAACTTGAAAAGGGTgttcaattttcgat
tttcaagacttttaaaattaaattttttcagaaTCTTAATGCTAATTTAG
GATCCTATATTAAGTGAAAGAAAGGTgatttattgccgacccaaaaaaaa
aTACCAGCGTATTgggattggtcgagagcatccaAATATTTaagatattt
catatttctctagcTTTTTTTCTTCCACATAGCATGCAGCATTGTCAAGG
GAATTTGTGGAGGTGATGACAGAAtacaataaaattcaaaacgacTACAG
AGACAAATGTAAAAATCGTATCAAAAGACAACTTGAAATTACTAATAGTA
AGTCTGATGATTTGGTaatgaactttttaaaaacttttacacTGGGAAGA
ATTCGAACAACTAGTTATTCGAAATAAGTATAGCTCAAGaattttcttta
ctcaaaattttgaatggcTCAAAAAGTTGTGAGTGGTTTTAATCAGCCCA
GATAAAAAGTTTAGCTGCAAAATGTTTTGGATAATAAACAAGGCTGGATA
AGCATATTCATGCCGTGGATAAAAATACTGATTCCAAAAGTTTGGTAATA
ACAGGTTTGGATAAAGGACACGGATGGATTAAGTGTATTCTCACACCATG
TTGGATCGAAAAAGGATCAGATTAGTATACCTCTTTTTCAGAAaagtaat
tttcttttttcttttaacagCTGAGAAGTCGTATACTGATGAAGAGGTAG
AGGAGATGATCGAGAGTAAGAACCCTGCTATCTTCACTCAAGGAGTAAGT
GTCTTTAGATCTTCATACTTTTTCTAGGTGACGTCTAGTTAGCATAGACT
GTATTGTGTAGtatctttaaaagtttttaatatcATACCAAAGACCTTAA
AAATGGTACTTGAATGTCTCTCTGCTTTAAACACTGCAGTTAAAGATTAG
TTAAAGAGAATgttcaagggtaagtggagaaatcaaGGGTAGAGTGGAAA
AGGGAGCCTGCCCATCCCTCCCCCACCCCAACAACGGTCGCACATTACAC
TCATTTAATATCTTAGATTAACTtcagtttgaaatattttttgaaggaCT
TATTTTGCAGTAATTCTGGTAACACTACTtttccttttcaaatttcatct
tACTCATTGACAATGTTTTCTTGTCTTTATTATTTTCAGATCATTACAGA
CACACAACAGGCTAAACAATCACTTCGTGAAATTGAAGCCCGTCACAATG
ATATTATCAAGTTAGAAACTAGTATAAGGGTATGTTATTGGTATTGTTAC
TCATCTATCACTCTTCTTTTTTCTGTCAAATTATAAaacaccttttttca
aaaaccaaaaaagaaattaaatataATGATAAGTGCATACGTGATGCTTA
CATGTCTTAActactttttttgtttactcgCACTAACTTTAATCTTCTAA
ACTCTGTGTTTTCATTTCCAGGAATTGCATGAAATGTTCACTGACATGGC
CATTCTTGTGCAAAGTCAGGTATCCCTTTATTTTATCCTATTTTAGCAAG
AATaagttatatatatatatattaattATACTTTAATCATTCACTTTTTA
CACGAAAAGCCTGAATAGTCATAATTGAGAGATATAGTCCTTCCGATAAA
CGGAACAGGCCCTATCCAGGACAACATTCGCTATCATAGGATGGGGAAAT
CACTGCGCTTACCTGACTCAAGGGAACTTTGTGCTTGTGATAAATGGAGC
AAACAACTCGGGGAGGACAGCTTCTCGTTGCATGGTCAAACCCTGAAAAG
TATTAGCAACCATAAAGCCAGACATCTTAATTACTGTCTAACGTTCTGTC
TTATTTTGATTGCAATTTGTTTACTTTAGGGGGAGATGATCGATCGTATA
GAATATAATGTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTGTTGA
CACCAAAAAAGCTGTTCGTTATCAGAGTAAAGCTAGAAGGGTACGTTTCA
TAAATGTTTTATTCTATGGTGATGGTCTTTGAAACAACATAGCAGCTGCT
ATGTGGACATCCTCTTAGAAATTCATTTTAAAGATGCTTATAAAAGTAGT
AGCAGCATGTGATGTAAAGACAGCGGCAAAATCCATTTTATTCCTAATTG
cttttcttggatttttttattGACTCGAAACTATCCATCTTCATCTATCT
ATTAATTCGATATGTAttcgatattttattttttattttcatttcttatc
ttttttcttccttttagaaaaaaattatgattgcAATCTGTCTGGCTGTC
atggttttgattttggcacTGATTATTTACTTTAGTGTAGCATAAAATCT
CACTTGTGAACAATCTAGCTTTCACTTTTGGCTGCATTGACATCATAATT
ATATGGATGGTAGCACAAACGCAGGCAGGCCGCAGACAAATGGATACAGT
CTGCAGTATAACATAAGGGGTCCCAATTTTTTACATCTACAAAGATTTCG
AACTAAATAGTTTGTAGTACACAATGTATTTACAAATGCTTTTATTTAGT
GGAAAAGGGTAATACAGAAGAGATGTATTGTATATTTTGATGGTACAATT
TATATAATTGATGTTATGTATTACATGATATTATGCTTCTATTGTGATAT
AAGTATAGTTCTCAAATTTTGTAACACCACATTTTCTAGCTTGCACCACC
AATGAATATTAGAATGCACAAACTATGGAAGGTAATAAGAAGTACATCAG
AATGGTTGAGGATGATAACAACGATAAGCATTCTGTGTGACTTACAGTGA
TTCGTATACGTAATAATGATTTTGAACTACTATAGTTTTGAAACATACCG
AACTTAGTGAGGGGTTGTGATCACAGATTGGTATtaaaagcccgaaaggc
tagatgtcgtgcttttgctgaaaagtgtgctgtGGCTACGTATGAAATCC
TAGCTAGGttacgtgacattacaatagaatttcagcgcttgaccaatcag
taGTTTCGCGCACTTTTTGTTGCCtgtgatggcttaaagcacgacatcta
gcccttcgggctttttaTAAATCTGAGGTTGTGATTACAAAAGGTAAGGT
TATGAAAGATTATGTGCTCCACTGTAGGCTAAATGTAATCAGCATCTAGT
AATAAGTATAAGCACTCTTACAAtcgcaatttttgaaaaactgacaTTAC
AACAGACGATTAGgggagtcaacattgagaaaacaCGTAGATTTTTTTTG
TAGTCAGTATAGTTGTAACAtacttttttttctcattttactTGACTTTA
ATAATAGCTATCATTAATCTCCTCTATAAAAGAACAgtaatgactttttt
tttattttaacatattttttctGATTATCCCCATAATTATTATATTCTAT
TGTTCTAGAGCACCAAATTTCTATACCCACCGCATTTTCACGAGTAGAAT
TTCATTCAATTTATTGATCTTTCATGTTTTGACATAGTGATACCGTAACT
TAGTGTAATGCCGACGTACCTTGTTTAATTCCGTCATAGCAATTATCTGG
TCCTTTAAATGTTTATGAATAAATCCTTCTGAGAAGCTGTTAAAGAAATC
ACTCTAACTATTCTAAAtactttgcagaccagataaCGGCTATgacggaa
ttagacaaggtatgtcgaCATAAGACGAATTCACGGTAAGTCTCAGTAAG
GACAGTGGAGATTTTAACTAGATTTTTGTAAGCCTTTTTCCATACCTTAT
CTGTATTCGATCTTTTCATCTATTGGAATAAACACGAGCTTTTATTATTA
ACCTGATCAACCTATTTAGTTTTAGTAATTACAATTACATGTACTAGACA
TTTTGATTGATAGCGGAAATACCAGCAGCTTTACTCTTCAAGTTACTCAA
TAACGACTATAggagatttgaaattttattttgtagatTCAATATAATGT
ATATTTTTCACATGAGAGAAGATTGAGGGAAAGGCTATGTGATTCCAACC
AAAagacccctgtgtcacagacccgctgaggCCTTAGCCCCagtggaaaa
tttggcaaaaatttcgttcccggtgggaaaaatttcctaaattccagccc
cactgagaaattgactttgatttcatccccattcgaaattcatcgTTCAT
GCAAATTGcaatccaaaaccatccccactggatttggaacaaaataaatt
tttatccccgctgtaagaaaaagtttcaccggggctgtgagacagtggTG
TACCAAACAAGACAGCCAAATCTTTCTTGACGATCTTACTTCTCTTTTCT
CTAATCTCTCATGGGAGTAATCAATgtaataattgtttttttgtatgTTT
ACTATATTATTGTTTATTATGAATTTATGAAGAatactttttcgtttttt
gtttgttttctttgatttacaAAATTGAAAGAGATTGAGGGGAAAGCTAA
ACATTCTTAATTAAAGAGAATtgactacatgtttttttttctataagcat
aacgtttataagcatatacaggCTCAGTTATTGGTTCCCT

Coding sequence (CDS) from alignment at sc0000314:185352..191541+

>TCONS_00018972 ID=TCONS_00018972|Name=TCONS_00018972|organism=Clytia hemisphaerica|type=CDS|length=10593bp|location=Sequence derived from alignment at sc0000314:185352..191541+ (Clytia hemisphaerica)
ATGAAGGATCGCTTAGCCCAACTGCGAGATCTGCAGGTGCAGTCAGACCT
TCCGCCTGAATATGAGGAGACAAACTTATCGGAAGAAGACAAAACAAACC
CATTCCTAAATGACTTTTTCTCCCAGATCGAAGTTATACAACAAGACATC
AGGGATATCCAAGATAATGTGCAAGAAATCAAGAAGAAACAGAGTGCTAT
CCTCTCTGCTCCTCAATCAGGGGATAAGATGAAAGAGGAACTAGAGCAAT
TTATGGCTGATATCACCAGATCTGCAAACAGAGTCAAACAAATCTTGAAA
GGTATGGAAAAGAGCATCAAGGACCAAGAAAATAGCAATCAAGGAAATTT
CGCTGACATCAGAATCAAGAAATGCCAGCATGCAGCATTGTCAAGGGAAT
TTGTGGAGGTGATGACAGAAtacaataaaattcaaaacgacTACAGAGAC
AAATGTAAAAATCGTATCAAAAGACAACTTGAAATTACTAATACTGAGAA
GTCGTATACTGATGAAGAGGTAGAGGAGATGATCGAGAGTAAGAACCCTG
CTATCTTCACTCAAGGAATCATTACAGACACACAACAGGCTAAACAATCA
CTTCGTGAAATTGAAGCCCGTCACAATGATATTATCAAGTTAGAAACTAG
TATAAGGGAATTGCATGAAATGTTCACTGACATGGCCATTCTTGTGCAAA
GTCAGGGGGAGATGATCGATCGTATAGAATATAATGTGGAGCAAGCGGCA
GAGTACGTACAACGAGCTGTTGTTGACACCAAAAAAGCTGTTCGTTATCA
GAGTAAAGCTAGAAGGaaaaaaattatgattgcAATCTGTCTGGCTGTCa
tgCTTGCACCACCAATGAATATTAGAATGCACAAACTATGGAAGGTAATA
AGAAGTACATCAGAATGGTTGAGGATGATAACAACGATAAGCATTCTGTG
TGACTTACAGTGAATGAAGGATCGCTTAGCCCAACTGCGAGATCTGCAGG
TGCAGTCAGACCTTCCGCCTGAATATGAGGAGACAAACTTATCGGAAGAA
GACAAAACAAACCCATTCCTAAATGACTTTTTCTCCCAGATCGAAGTTAT
ACAACAAGACATCAGGGATATCCAAGATAATGTGCAAGAAATCAAGAAGA
AACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGGGATAAGATGAAAGAG
GAACTAGAGCAATTTATGGCTGATATCACCAGATCTGCAAACAGAGTCAA
ACAAATCTTGAAAGGTATGGAAAAGAGCATCAAGGACCAAGAAAATAGCA
ATCAAGGAAATTTCGCTGACATCAGAATCAAGAAATGCCAGCATGCAGCA
TTGTCAAGGGAATTTGTGGAGGTGATGACAGAAtacaataaaattcaaaa
cgacTACAGAGACAAATGTAAAAATCGTATCAAAAGACAACTTGAAATTA
CTAATACTGAGAAGTCGTATACTGATGAAGAGGTAGAGGAGATGATCGAG
AGTAAGAACCCTGCTATCTTCACTCAAGGAATCATTACAGACACACAACA
GGCTAAACAATCACTTCGTGAAATTGAAGCCCGTCACAATGATATTATCA
AGTTAGAAACTAGTATAAGGGAATTGCATGAAATGTTCACTGACATGGCC
ATTCTTGTGCAAAGTCAGGGGGAGATGATCGATCGTATAGAATATAATGT
GGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTGTTGACACCAAAAAAG
CTGTTCGTTATCAGAGTAAAGCTAGAAGGaaaaaaattatgattgcAATC
TGTCTGGCTGTCatgCTTGCACCACCAATGAATATTAGAATGCACAAACT
ATGGAAGGTAATAAGAAGTACATCAGAATGGTTGAGGATGATAACAACGA
TAAGCATTCTGTGTGACTTACAGTGAATGAAGGATCGCTTAGCCCAACTG
CGAGATCTGCAGGTGCAGTCAGACCTTCCGCCTGAATATGAGGAGACAAA
CTTATCGGAAGAAGACAAAACAAACCCATTCCTAAATGACTTTTTCTCCC
AGATCGAAGTTATACAACAAGACATCAGGGATATCCAAGATAATGTGCAA
GAAATCAAGAAGAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGGGA
TAAGATGAAAGAGGAACTAGAGCAATTTATGGCTGATATCACCAGATCTG
CAAACAGAGTCAAACAAATCTTGAAAGGTATGGAAAAGAGCATCAAGGAC
CAAGAAAATAGCAATCAAGGAAATTTCGCTGACATCAGAATCAAGAAATG
CCAGCATGCAGCATTGTCAAGGGAATTTGTGGAGGTGATGACAGAAtaca
ataaaattcaaaacgacTACAGAGACAAATGTAAAAATCGTATCAAAAGA
CAACTTGAAATTACTAATACTGAGAAGTCGTATACTGATGAAGAGGTAGA
GGAGATGATCGAGAGTAAGAACCCTGCTATCTTCACTCAAGGAATCATTA
CAGACACACAACAGGCTAAACAATCACTTCGTGAAATTGAAGCCCGTCAC
AATGATATTATCAAGTTAGAAACTAGTATAAGGGAATTGCATGAAATGTT
CACTGACATGGCCATTCTTGTGCAAAGTCAGGGGGAGATGATCGATCGTA
TAGAATATAATGTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTGTT
GACACCAAAAAAGCTGTTCGTTATCAGAGTAAAGCTAGAAGGaaaaaaat
tatgattgcAATCTGTCTGGCTGTCatgCTTGCACCACCAATGAATATTA
GAATGCACAAACTATGGAAGGTAATAAGAAGTACATCAGAATGGTTGAGG
ATGATAACAACGATAAGCATTCTGTGTGACTTACAGTGAATGAAGGATCG
CTTAGCCCAACTGCGAGATCTGCAGGTGCAGTCAGACCTTCCGCCTGAAT
ATGAGGAGACAAACTTATCGGAAGAAGACAAAACAAACCCATTCCTAAAT
GACTTTTTCTCCCAGATCGAAGTTATACAACAAGACATCAGGGATATCCA
AGATAATGTGCAAGAAATCAAGAAGAAACAGAGTGCTATCCTCTCTGCTC
CTCAATCAGGGGATAAGATGAAAGAGGAACTAGAGCAATTTATGGCTGAT
ATCACCAGATCTGCAAACAGAGTCAAACAAATCTTGAAAGGTATGGAAAA
GAGCATCAAGGACCAAGAAAATAGCAATCAAGGAAATTTCGCTGACATCA
GAATCAAGAAATGCCAGCATGCAGCATTGTCAAGGGAATTTGTGGAGGTG
ATGACAGAAtacaataaaattcaaaacgacTACAGAGACAAATGTAAAAA
TCGTATCAAAAGACAACTTGAAATTACTAATACTGAGAAGTCGTATACTG
ATGAAGAGGTAGAGGAGATGATCGAGAGTAAGAACCCTGCTATCTTCACT
CAAGGAATCATTACAGACACACAACAGGCTAAACAATCACTTCGTGAAAT
TGAAGCCCGTCACAATGATATTATCAAGTTAGAAACTAGTATAAGGGAAT
TGCATGAAATGTTCACTGACATGGCCATTCTTGTGCAAAGTCAGGGGGAG
ATGATCGATCGTATAGAATATAATGTGGAGCAAGCGGCAGAGTACGTACA
ACGAGCTGTTGTTGACACCAAAAAAGCTGTTCGTTATCAGAGTAAAGCTA
GAAGGaaaaaaattatgattgcAATCTGTCTGGCTGTCatgCTTGCACCA
CCAATGAATATTAGAATGCACAAACTATGGAAGGTAATAAGAAGTACATC
AGAATGGTTGAGGATGATAACAACGATAAGCATTCTGTGTGACTTACAGT
GAATGAAGGATCGCTTAGCCCAACTGCGAGATCTGCAGGTGCAGTCAGAC
CTTCCGCCTGAATATGAGGAGACAAACTTATCGGAAGAAGACAAAACAAA
CCCATTCCTAAATGACTTTTTCTCCCAGATCGAAGTTATACAACAAGACA
TCAGGGATATCCAAGATAATGTGCAAGAAATCAAGAAGAAACAGAGTGCT
ATCCTCTCTGCTCCTCAATCAGGGGATAAGATGAAAGAGGAACTAGAGCA
ATTTATGGCTGATATCACCAGATCTGCAAACAGAGTCAAACAAATCTTGA
AAGGTATGGAAAAGAGCATCAAGGACCAAGAAAATAGCAATCAAGGAAAT
TTCGCTGACATCAGAATCAAGAAATGCCAGCATGCAGCATTGTCAAGGGA
ATTTGTGGAGGTGATGACAGAAtacaataaaattcaaaacgacTACAGAG
ACAAATGTAAAAATCGTATCAAAAGACAACTTGAAATTACTAATACTGAG
AAGTCGTATACTGATGAAGAGGTAGAGGAGATGATCGAGAGTAAGAACCC
TGCTATCTTCACTCAAGGAATCATTACAGACACACAACAGGCTAAACAAT
CACTTCGTGAAATTGAAGCCCGTCACAATGATATTATCAAGTTAGAAACT
AGTATAAGGGAATTGCATGAAATGTTCACTGACATGGCCATTCTTGTGCA
AAGTCAGGGGGAGATGATCGATCGTATAGAATATAATGTGGAGCAAGCGG
CAGAGTACGTACAACGAGCTGTTGTTGACACCAAAAAAGCTGTTCGTTAT
CAGAGTAAAGCTAGAAGGaaaaaaattatgattgcAATCTGTCTGGCTGT
CatgCTTGCACCACCAATGAATATTAGAATGCACAAACTATGGAAGGTAA
TAAGAAGTACATCAGAATGGTTGAGGATGATAACAACGATAAGCATTCTG
TGTGACTTACAGTGAATGAAGGATCGCTTAGCCCAACTGCGAGATCTGCA
GGTGCAGTCAGACCTTCCGCCTGAATATGAGGAGACAAACTTATCGGAAG
AAGACAAAACAAACCCATTCCTAAATGACTTTTTCTCCCAGATCGAAGTT
ATACAACAAGACATCAGGGATATCCAAGATAATGTGCAAGAAATCAAGAA
GAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGGGATAAGATGAAAG
AGGAACTAGAGCAATTTATGGCTGATATCACCAGATCTGCAAACAGAGTC
AAACAAATCTTGAAAGGTATGGAAAAGAGCATCAAGGACCAAGAAAATAG
CAATCAAGGAAATTTCGCTGACATCAGAATCAAGAAATGCCAGCATGCAG
CATTGTCAAGGGAATTTGTGGAGGTGATGACAGAAtacaataaaattcaa
aacgacTACAGAGACAAATGTAAAAATCGTATCAAAAGACAACTTGAAAT
TACTAATACTGAGAAGTCGTATACTGATGAAGAGGTAGAGGAGATGATCG
AGAGTAAGAACCCTGCTATCTTCACTCAAGGAATCATTACAGACACACAA
CAGGCTAAACAATCACTTCGTGAAATTGAAGCCCGTCACAATGATATTAT
CAAGTTAGAAACTAGTATAAGGGAATTGCATGAAATGTTCACTGACATGG
CCATTCTTGTGCAAAGTCAGGGGGAGATGATCGATCGTATAGAATATAAT
GTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTGTTGACACCAAAAA
AGCTGTTCGTTATCAGAGTAAAGCTAGAAGGaaaaaaattatgattgcAA
TCTGTCTGGCTGTCatgCTTGCACCACCAATGAATATTAGAATGCACAAA
CTATGGAAGGTAATAAGAAGTACATCAGAATGGTTGAGGATGATAACAAC
GATAAGCATTCTGTGTGACTTACAGTGAATGAAGGATCGCTTAGCCCAAC
TGCGAGATCTGCAGGTGCAGTCAGACCTTCCGCCTGAATATGAGGAGACA
AACTTATCGGAAGAAGACAAAACAAACCCATTCCTAAATGACTTTTTCTC
CCAGATCGAAGTTATACAACAAGACATCAGGGATATCCAAGATAATGTGC
AAGAAATCAAGAAGAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGG
GATAAGATGAAAGAGGAACTAGAGCAATTTATGGCTGATATCACCAGATC
TGCAAACAGAGTCAAACAAATCTTGAAAGGTATGGAAAAGAGCATCAAGG
ACCAAGAAAATAGCAATCAAGGAAATTTCGCTGACATCAGAATCAAGAAA
TGCCAGCATGCAGCATTGTCAAGGGAATTTGTGGAGGTGATGACAGAAta
caataaaattcaaaacgacTACAGAGACAAATGTAAAAATCGTATCAAAA
GACAACTTGAAATTACTAATACTGAGAAGTCGTATACTGATGAAGAGGTA
GAGGAGATGATCGAGAGTAAGAACCCTGCTATCTTCACTCAAGGAATCAT
TACAGACACACAACAGGCTAAACAATCACTTCGTGAAATTGAAGCCCGTC
ACAATGATATTATCAAGTTAGAAACTAGTATAAGGGAATTGCATGAAATG
TTCACTGACATGGCCATTCTTGTGCAAAGTCAGGGGGAGATGATCGATCG
TATAGAATATAATGTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTG
TTGACACCAAAAAAGCTGTTCGTTATCAGAGTAAAGCTAGAAGGaaaaaa
attatgattgcAATCTGTCTGGCTGTCatgCTTGCACCACCAATGAATAT
TAGAATGCACAAACTATGGAAGGTAATAAGAAGTACATCAGAATGGTTGA
GGATGATAACAACGATAAGCATTCTGTGTGACTTACAGTGAATGAAGGAT
CGCTTAGCCCAACTGCGAGATCTGCAGGTGCAGTCAGACCTTCCGCCTGA
ATATGAGGAGACAAACTTATCGGAAGAAGACAAAACAAACCCATTCCTAA
ATGACTTTTTCTCCCAGATCGAAGTTATACAACAAGACATCAGGGATATC
CAAGATAATGTGCAAGAAATCAAGAAGAAACAGAGTGCTATCCTCTCTGC
TCCTCAATCAGGGGATAAGATGAAAGAGGAACTAGAGCAATTTATGGCTG
ATATCACCAGATCTGCAAACAGAGTCAAACAAATCTTGAAAGGTATGGAA
AAGAGCATCAAGGACCAAGAAAATAGCAATCAAGGAAATTTCGCTGACAT
CAGAATCAAGAAATGCCAGCATGCAGCATTGTCAAGGGAATTTGTGGAGG
TGATGACAGAAtacaataaaattcaaaacgacTACAGAGACAAATGTAAA
AATCGTATCAAAAGACAACTTGAAATTACTAATACTGAGAAGTCGTATAC
TGATGAAGAGGTAGAGGAGATGATCGAGAGTAAGAACCCTGCTATCTTCA
CTCAAGGAATCATTACAGACACACAACAGGCTAAACAATCACTTCGTGAA
ATTGAAGCCCGTCACAATGATATTATCAAGTTAGAAACTAGTATAAGGGA
ATTGCATGAAATGTTCACTGACATGGCCATTCTTGTGCAAAGTCAGGGGG
AGATGATCGATCGTATAGAATATAATGTGGAGCAAGCGGCAGAGTACGTA
CAACGAGCTGTTGTTGACACCAAAAAAGCTGTTCGTTATCAGAGTAAAGC
TAGAAGGaaaaaaattatgattgcAATCTGTCTGGCTGTCatgCTTGCAC
CACCAATGAATATTAGAATGCACAAACTATGGAAGGTAATAAGAAGTACA
TCAGAATGGTTGAGGATGATAACAACGATAAGCATTCTGTGTGACTTACA
GTGAATGAAGGATCGCTTAGCCCAACTGCGAGATCTGCAGGTGCAGTCAG
ACCTTCCGCCTGAATATGAGGAGACAAACTTATCGGAAGAAGACAAAACA
AACCCATTCCTAAATGACTTTTTCTCCCAGATCGAAGTTATACAACAAGA
CATCAGGGATATCCAAGATAATGTGCAAGAAATCAAGAAGAAACAGAGTG
CTATCCTCTCTGCTCCTCAATCAGGGGATAAGATGAAAGAGGAACTAGAG
CAATTTATGGCTGATATCACCAGATCTGCAAACAGAGTCAAACAAATCTT
GAAAGGTATGGAAAAGAGCATCAAGGACCAAGAAAATAGCAATCAAGGAA
ATTTCGCTGACATCAGAATCAAGAAATGCCAGCATGCAGCATTGTCAAGG
GAATTTGTGGAGGTGATGACAGAAtacaataaaattcaaaacgacTACAG
AGACAAATGTAAAAATCGTATCAAAAGACAACTTGAAATTACTAATACTG
AGAAGTCGTATACTGATGAAGAGGTAGAGGAGATGATCGAGAGTAAGAAC
CCTGCTATCTTCACTCAAGGAATCATTACAGACACACAACAGGCTAAACA
ATCACTTCGTGAAATTGAAGCCCGTCACAATGATATTATCAAGTTAGAAA
CTAGTATAAGGGAATTGCATGAAATGTTCACTGACATGGCCATTCTTGTG
CAAAGTCAGGGGGAGATGATCGATCGTATAGAATATAATGTGGAGCAAGC
GGCAGAGTACGTACAACGAGCTGTTGTTGACACCAAAAAAGCTGTTCGTT
ATCAGAGTAAAGCTAGAAGGaaaaaaattatgattgcAATCTGTCTGGCT
GTCatgCTTGCACCACCAATGAATATTAGAATGCACAAACTATGGAAGGT
AATAAGAAGTACATCAGAATGGTTGAGGATGATAACAACGATAAGCATTC
TGTGTGACTTACAGTGAATGAAGGATCGCTTAGCCCAACTGCGAGATCTG
CAGGTGCAGTCAGACCTTCCGCCTGAATATGAGGAGACAAACTTATCGGA
AGAAGACAAAACAAACCCATTCCTAAATGACTTTTTCTCCCAGATCGAAG
TTATACAACAAGACATCAGGGATATCCAAGATAATGTGCAAGAAATCAAG
AAGAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGGGATAAGATGAA
AGAGGAACTAGAGCAATTTATGGCTGATATCACCAGATCTGCAAACAGAG
TCAAACAAATCTTGAAAGGTATGGAAAAGAGCATCAAGGACCAAGAAAAT
AGCAATCAAGGAAATTTCGCTGACATCAGAATCAAGAAATGCCAGCATGC
AGCATTGTCAAGGGAATTTGTGGAGGTGATGACAGAAtacaataaaattc
aaaacgacTACAGAGACAAATGTAAAAATCGTATCAAAAGACAACTTGAA
ATTACTAATACTGAGAAGTCGTATACTGATGAAGAGGTAGAGGAGATGAT
CGAGAGTAAGAACCCTGCTATCTTCACTCAAGGAATCATTACAGACACAC
AACAGGCTAAACAATCACTTCGTGAAATTGAAGCCCGTCACAATGATATT
ATCAAGTTAGAAACTAGTATAAGGGAATTGCATGAAATGTTCACTGACAT
GGCCATTCTTGTGCAAAGTCAGGGGGAGATGATCGATCGTATAGAATATA
ATGTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTGTTGACACCAAA
AAAGCTGTTCGTTATCAGAGTAAAGCTAGAAGGaaaaaaattatgattgc
AATCTGTCTGGCTGTCatgCTTGCACCACCAATGAATATTAGAATGCACA
AACTATGGAAGGTAATAAGAAGTACATCAGAATGGTTGAGGATGATAACA
ACGATAAGCATTCTGTGTGACTTACAGTGAATGAAGGATCGCTTAGCCCA
ACTGCGAGATCTGCAGGTGCAGTCAGACCTTCCGCCTGAATATGAGGAGA
CAAACTTATCGGAAGAAGACAAAACAAACCCATTCCTAAATGACTTTTTC
TCCCAGATCGAAGTTATACAACAAGACATCAGGGATATCCAAGATAATGT
GCAAGAAATCAAGAAGAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAG
GGGATAAGATGAAAGAGGAACTAGAGCAATTTATGGCTGATATCACCAGA
TCTGCAAACAGAGTCAAACAAATCTTGAAAGGTATGGAAAAGAGCATCAA
GGACCAAGAAAATAGCAATCAAGGAAATTTCGCTGACATCAGAATCAAGA
AATGCCAGCATGCAGCATTGTCAAGGGAATTTGTGGAGGTGATGACAGAA
tacaataaaattcaaaacgacTACAGAGACAAATGTAAAAATCGTATCAA
AAGACAACTTGAAATTACTAATACTGAGAAGTCGTATACTGATGAAGAGG
TAGAGGAGATGATCGAGAGTAAGAACCCTGCTATCTTCACTCAAGGAATC
ATTACAGACACACAACAGGCTAAACAATCACTTCGTGAAATTGAAGCCCG
TCACAATGATATTATCAAGTTAGAAACTAGTATAAGGGAATTGCATGAAA
TGTTCACTGACATGGCCATTCTTGTGCAAAGTCAGGGGGAGATGATCGAT
CGTATAGAATATAATGTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGT
TGTTGACACCAAAAAAGCTGTTCGTTATCAGAGTAAAGCTAGAAGGaaaa
aaattatgattgcAATCTGTCTGGCTGTCatgCTTGCACCACCAATGAAT
ATTAGAATGCACAAACTATGGAAGGTAATAAGAAGTACATCAGAATGGTT
GAGGATGATAACAACGATAAGCATTCTGTGTGACTTACAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010637XLOC_010637Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018972-proteinTCONS_00018972-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018972-exon-sc0000314-1491911889:185352..185451TCONS_00018972-exon-sc0000314-1491911889:185352..185451Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:185352..185451TCONS_00018972-exon-sc0000314-1510915933:185352..185451Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:185352..185451TCONS_00018972-exon-sc0000314-1575043694:185352..185451Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:186343..186438TCONS_00018972-exon-sc0000314-1491911889:186343..186438Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:186343..186438TCONS_00018972-exon-sc0000314-1510915933:186343..186438Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:186343..186438TCONS_00018972-exon-sc0000314-1575043694:186343..186438Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:186597..186771TCONS_00018972-exon-sc0000314-1491911889:186597..186771Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:186597..186771TCONS_00018972-exon-sc0000314-1510915933:186597..186771Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:186597..186771TCONS_00018972-exon-sc0000314-1575043694:186597..186771Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:186916..186992TCONS_00018972-exon-sc0000314-1491911889:186916..186992Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:186916..186992TCONS_00018972-exon-sc0000314-1510915933:186916..186992Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:186916..186992TCONS_00018972-exon-sc0000314-1575043694:186916..186992Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:187234..187348TCONS_00018972-exon-sc0000314-1491911889:187234..187348Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:187234..187348TCONS_00018972-exon-sc0000314-1510915933:187234..187348Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:187234..187348TCONS_00018972-exon-sc0000314-1575043694:187234..187348Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:187722..187795TCONS_00018972-exon-sc0000314-1491911889:187722..187795Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:187722..187795TCONS_00018972-exon-sc0000314-1510915933:187722..187795Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:187722..187795TCONS_00018972-exon-sc0000314-1575043694:187722..187795Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:188191..188280TCONS_00018972-exon-sc0000314-1491911889:188191..188280Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:188191..188280TCONS_00018972-exon-sc0000314-1510915933:188191..188280Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:188191..188280TCONS_00018972-exon-sc0000314-1575043694:188191..188280Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:188473..188520TCONS_00018972-exon-sc0000314-1491911889:188473..188520Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:188473..188520TCONS_00018972-exon-sc0000314-1510915933:188473..188520Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:188473..188520TCONS_00018972-exon-sc0000314-1575043694:188473..188520Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:188881..188991TCONS_00018972-exon-sc0000314-1491911889:188881..188991Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:188881..188991TCONS_00018972-exon-sc0000314-1510915933:188881..188991Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:188881..188991TCONS_00018972-exon-sc0000314-1575043694:188881..188991Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:189269..189304TCONS_00018972-exon-sc0000314-1491911889:189269..189304Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:189269..189304TCONS_00018972-exon-sc0000314-1510915933:189269..189304Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:189269..189304TCONS_00018972-exon-sc0000314-1575043694:189269..189304Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1491911889:189691..191541TCONS_00018972-exon-sc0000314-1491911889:189691..191541Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1510915933:189691..191541TCONS_00018972-exon-sc0000314-1510915933:189691..191541Clytia hemisphaericaexon
TCONS_00018972-exon-sc0000314-1575043694:189691..191541TCONS_00018972-exon-sc0000314-1575043694:189691..191541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:185352..191541 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.420985	0.271127	1.13918	0.960006	2.07937	0.624807	0.322758	2.613e-06	0	0	0	2.95233e-09	0	0	0	0	5.36203e-05	1.98191e-06	0	1.26952e-06	0	0.269929	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006011Syntaxin_N
IPR000727T_SNARE_dom
IPR006012Syntaxin/epimorphin_CS
IPR010989SNARE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Molecular Function
TermDefinition
GO:0005484SNAP receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
molecular_function GO:0005484 SNAP receptor activity
Blast
[Close]
BLAST of TCONS_00018972 vs. Swiss-Prot (Human)
Match: STX1B (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.763e-95
Identity = 161/293 (54.95%), Postives = 217/293 (74.06%), Query Frame = 2 
Query:   71 MKDRLAQLRDLQVQSDLPPEYEETNLSEEDKTNPFLNDFFSQIEVIQQDIRDIQDNVQEIKKKQSAILSAPQSGDKMKEELEQFMADITRSANRVKQILKGMEKSIKDQENSNQGNFADIRIKKCQHAALSREFVEVMTEYNKIQNDYRDKCKNRIKRQLEITNTEKSYTDEEVEEMIESKNPAIFTQGIITDTQQAKQSLREIEARHNDIIKLETSIRELHEMFTDMAILVQSQGEMIDRIEYNVEQAAEYVQRAVVDTKKAVRYQSKARRKKIMIAIC---LAVMLAPPMN 940
            MKDR  +LR  +   D      E  +   D+ + F+++FF Q+E I+  I  + ++V+++KK+ SAIL+AP   +K K+ELE   ADI ++AN+V+  LK +E+SI+ +E  N+ + AD+RI+K QH+ LSR+FVEVMTEYN  Q+ YRD+CK+RI+RQLEIT   ++ T+EE+E+M+ES   AIFT  I  D+Q  KQ+L EIE RHN+IIKLETSIRELH+MF DMA+LV+SQGEMIDRIEYNVE + +YV+RAV DTKKAV+YQSKARRKKIMI IC   L V+LA  + 
Sbjct:    1 MKDRTQELRSAKDSDD------EEEVVHVDR-DHFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSS-ADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITG--RTTTNEELEDMLESGKLAIFTDDIKMDSQMTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVVLGVVLASSIG 283
The following BLAST results are available for this feature:
BLAST of TCONS_00018972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX1B2.763e-9554.95Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1[more]
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