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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018973 ID=TCONS_00018973|Name=TCONS_00018973|organism=Clytia hemisphaerica|type=transcript|length=1429bpRun BLAST on NCBI protein sequence of TCONS_00018973-protein >TCONS_00018973-protein ID=TCONS_00018973-protein|Name=TCONS_00018973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp MPTNILILAKLGAGTGNRTTAERIRQHLNNSDLCPLLCDVTQFRSPRDLSRun BLAST on NCBI transcript from alignment at sc0000314:191676..205366+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018973 ID=TCONS_00018973|Name=TCONS_00018973|organism=Clytia hemisphaerica|type=transcript|length=13691bp|location=Sequence derived from alignment at sc0000314:191676..205366+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000314:191676..205366+ >TCONS_00018973 ID=TCONS_00018973|Name=TCONS_00018973|organism=Clytia hemisphaerica|type=CDS|length=12636bp|location=Sequence derived from alignment at sc0000314:191676..205366+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018973 vs. Swiss-Prot (Human)
Match: GL1D1 (Glycosyltransferase 1 domain-containing protein 1 OS=Homo sapiens GN=GLT1D1 PE=2 SV=2) HSP 1 Score: 234.187 bits (596), Expect = 9.477e-72 Identity = 117/343 (34.11%), Postives = 196/343 (57.14%), Query Frame = 1
Query: 334 ILILAKLGAGTGNRTTAERIRQHLNNSDLCPLLCDVTQFRSPRDLSDYVIHNDVTCLIVIHAYRAGKFLNDISIPFALVFGGTDVQCSSWNDQENAIMADVVAKAIVLIAFSEVMKEAASVKWPSILKEKKIFVQPQGVTIERIGPTNYSFQHLFNDNGMSEVKTKEKIIFLFVGGIRPVKDPLFLIYTFAQMHEENDRILFVIIGPILDEEYARKCRLATSKLKGIYMFDQISRDKVHALIHQSVALVNSSIEEGMAGAILESMKIETPVVVRNNRGNASIVQHQSTGLLFQHPQDFREQANLLLENSTLRRNLIQNAQDFIESNHNPDVERSTYHEIIKIL 1362
+L LA L TGN TA+R+R HL + +L D F S ++++ ++ + + +H YR G+ L IPF ++FGGTDV + ++N +M V+ +A +AF+E MKE A +WP + K++VQ QG+ N++ F IFL + G+R VKDPL+L+ F+ H+E + VI+GP +D + R+ + + G+ + ++ ++ +HA++ A+VNSS+ EGM+ AILE+M +E PV+ RN GNA++V+H+ TGLLF +PQ+F A L+ + L + ++ N ++++ H+ VER TY ++I+ L
Sbjct: 3 LLFLAVLRPHTGNAVTAQRVRAHLEAAGHVCVLKDAFDFESRSEIANLILAENCEAALALHLYRGGRLLQGHRIPFGVIFGGTDVNEDANQAEKNTVMGRVLEEARFAVAFTESMKEMAQAQWPH--AKGKVYVQSQGIATTPNAAFNWN---TFLQRSEINQSADNLHIFLLICGLRQVKDPLYLVDAFSAWHQEEPNVHLVIVGPEVDPVFTREVKAKVKRAAGVRLIGEMPQEDLHAVVKNCFAVVNSSVSEGMSAAILEAMDLEVPVLARNIPGNAAVVKHEVTGLLFSNPQEFVHLAKRLVSDPALEKEIVVNGREYVRMYHSWQVERDTYQQLIRKL 340 The following BLAST results are available for this feature:
BLAST of TCONS_00018973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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