TCONS_00018982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018982
Unique NameTCONS_00018982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018982 ID=TCONS_00018982|Name=TCONS_00018982|organism=Clytia hemisphaerica|type=transcript|length=401bp
AATTGATCCTATACCATGTGCTTGAATTCAGAAGGTATAAAAAGGCTGTT
ACCCAAGCTTTTCTTTGGTCAAGACTTTCAAGTAATACAAAACTGtaaaa
aactgtaaaaaaagagATGAAGTTCTGTGGTTTCGTTTTCATTTTGTTGT
TGGCAATGACGGCCTTGACAACGATGAACTCAGTGCAAGGATTGTGCATC
GGGAGTGGATGTGGAAAGAGTTGGCAACACGAAGGCTATTCATCAAAAGC
TGCCTGTAGAAAGAAATGTGTCCATGGAATAAAAgtgaaagttaaaattt
tctgacgagttttttcttcatcttttaaTAATATTGTGAAAGATACTGAA
ATTAAAACACATACACATACGTATCCGATTTTTTCcaacaataaatattt
t
Run BLAST on NCBI

transcript from alignment at sc0000314:208980..209671+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018982 ID=TCONS_00018982|Name=TCONS_00018982|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0000314:208980..209671+ (Clytia hemisphaerica)
AATTGATCCTATACCATGTGCTTGAATTCAGAAGGTATAAAAAGGCTGTT
ACCCAAGCTTTTCTTTGGTCAAGACTTTCAAGTAATACAAAACTGtaaaa
aactgtaaaaaaagTAAGTTTGATTATGGGCAATAAATAAGGACTGTTAA
CAATAGATTGCCACATTCAGCTGGCGAAAACTTTACCATACATTTCCTAT
ATGAGACAGTGGGGGACAATCAAATGAGTAATtatattttcagaaattga
gTTGGGCtaaaatttttcgaattttgataGACGCCTTGACCTAATTTTTA
GTTGGTTTAGGAATAGAATTGTACTTGAAATGACAAATTTGTCAAGTGTG
GAAGGGGTAATTAAGAGTATaagtgatttttaattttttttttttcaatt
ttaggagATGAAGTTCTGTGGTTTCGTTTTCATTTTGTTGTTGGCAATGA
CGGCCTTGACAACGATGAACTCAGTGCAAGGATTGTGCATCGGGAGTGGA
TGTGGAAAGAGTTGGCAACACGAAGGCTATTCATCAAAAGCTGCCTGTAG
AAAGAAATGTGTCCATGGAATAAAAgtgaaagttaaaattttctgacgag
ttttttcttcatcttttaaTAATATTGTGAAAGATACTGAAATTAAAACA
CATACACATACGTATCCGATTTTTTCcaacaataaatatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010640XLOC_010640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018982-exon-sc0000314-1491911889:208980..209092TCONS_00018982-exon-sc0000314-1491911889:208980..209092Clytia hemisphaericaexon
TCONS_00018982-exon-sc0000314-1510915933:208980..209092TCONS_00018982-exon-sc0000314-1510915933:208980..209092Clytia hemisphaericaexon
TCONS_00018982-exon-sc0000314-1575043694:208980..209092TCONS_00018982-exon-sc0000314-1575043694:208980..209092Clytia hemisphaericaexon
TCONS_00018982-exon-sc0000314-1491911889:209384..209671TCONS_00018982-exon-sc0000314-1491911889:209384..209671Clytia hemisphaericaexon
TCONS_00018982-exon-sc0000314-1510915933:209384..209671TCONS_00018982-exon-sc0000314-1510915933:209384..209671Clytia hemisphaericaexon
TCONS_00018982-exon-sc0000314-1575043694:209384..209671TCONS_00018982-exon-sc0000314-1575043694:209384..209671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:208980..209671 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.73912	0.720758	0	0.614059	0.249186	0.19691	0.475127	0.444809	0.467131	0.385745	0	0.615312	10.5687	14.0386	0.314772	1.0134	1.24842	5.97143	4.91063	12.3327	0.714623	0.522852	1.27119	2.50401	0.79356	0.708233	3.04044	8.3825	19.2786	17.9702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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