TCONS_00018991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018991
Unique NameTCONS_00018991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018991 ID=TCONS_00018991|Name=TCONS_00018991|organism=Clytia hemisphaerica|type=transcript|length=1376bp
GACAGCTAATAGCTACCGTAAATTTGTCAGTTTGGCAAAACCCTCAACGG
TCGATAAAAAGTGGCACGATCTTCGACCATTCCATTCACGTGCACGAAAG
CCATTCACAAACTTGCATAATATTAAAACAACAGCATGAATTATCTTTAA
GAATGACAATAACAAAATCTCTATTATCTACACATCATGTCAAATACCCT
CATGAGGAGAGGAGAGATGAATGGAATAGAAGTTGCTCGCTCAGcaCAAA
ATATTACAATGAATTTCCCAATCGCCCCAATAGTTTTCTCCTCATGTGGA
TCATTTCTTGGCCTTGCTTACTTATTAAAAAAGAAGTCATTTCCAAAGTA
CTTGAAGGATCCTGGTAGAAGGAACGCATGGTTGTGGCGAAACACATTTT
GCTCTTTGATTCACTCGTGTGCATCTGCTGTGTGGACCTTTTTCTGTTAT
TATGATGAGCCAAAACTATTGGGCGATATGGTGAACACAACAACGAACCT
CTCAATACAACTTTTGTCCTTTTCAACAGGTTATTTCATGTATGATTTTC
TGGATGTTGTTCTGAATGATGGCTTTCGACAAGTCTTTATCCTTACTCAT
CACACAGCTGTAATCACTGCATTCTCGTTGGCACTCACTAATGAACGTTA
CATGGGTTTTGGTGTGTGTGCTTTGATCATGGAATTCAACAGCATCTTCT
TACACATCAGACGTTTGATGAAACTTGTCAATCATTCATCTGGTTGGAAA
AGCATCAATGGGGTTTTCTTATTGCTAACAATGCTCTTTTGTCGTATCTG
CTTATCCTGTTGGATGGTGAGATGGCTTTTGCAGAATAGAGACTTATTAC
AATACAGCCATTATGTTGTTGGGCTGGTTGGCATGGTGATTATGACAGTC
ACCAATGTGGGTCTCATGTACCGTCTTTGGATGTCTGATTTCCATAAGAA
ATCAATCAACAAAAAAGTGCTTTCAGAAATCAAGAAATAACCACTACCTC
CTCCATCACATATTATACTTCACAGATGTCACTCACATCAATGAAAGTAC
CTTTATTAACATCAACTTTCAATTCTGAGTAACGAAGGGAACGGTTCAAT
ATGAGATGACCACAAAAAGAATACCATGACAGGATCATCCTTATCAACAT
TTCACACTCTACATCCCCTGACTTTTTGTATCAGCCActagattttttat
ttgttaaaacaaGATTTTCTACTAAACGTAGCCAAACGAGGGTCTTAGGT
AacacaaagtttttcaaaaaagtaactTGAAACtagatataaaatttttt
tatcaatttgtcTGTATTGTATTGGCTACACCAGTACTTTCATCTTGACC
ATTTGTGATGATTAATAgcggtacac
Run BLAST on NCBI

protein sequence of TCONS_00018991-protein

>TCONS_00018991-protein ID=TCONS_00018991-protein|Name=TCONS_00018991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MSNTLMRRGEMNGIEVARSAQNITMNFPIAPIVFSSCGSFLGLAYLLKKK
SFPKYLKDPGRRNAWLWRNTFCSLIHSCASAVWTFFCYYDEPKLLGDMVN
TTTNLSIQLLSFSTGYFMYDFLDVVLNDGFRQVFILTHHTAVITAFSLAL
TNERYMGFGVCALIMEFNSIFLHIRRLMKLVNHSSGWKSINGVFLLLTML
FCRICLSCWMVRWLLQNRDLLQYSHYVVGLVGMVIMTVTNVGLMYRLWMS
DFHKKSINKKVLSEIKK
Run BLAST on NCBI

transcript from alignment at sc0000314:103547..113322-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018991 ID=TCONS_00018991|Name=TCONS_00018991|organism=Clytia hemisphaerica|type=transcript|length=9776bp|location=Sequence derived from alignment at sc0000314:103547..113322- (Clytia hemisphaerica)
GACAGCTAATAGCTACCGTAAATTTGTCAGTTTGGCAAAACCCTCAACGG
TAGGTCTTTTTAAGATCGAGACGTCTTCAGGTCTTTGTTTCTACTTTACA
GTGGATTAGACGTGGGCTTTCTGCCCTCTACCAAATGGAATACGTATTCG
CTTTTATATGTAATATCTTACTGTAGGTCGATAAAAAGTGGCACGATCTT
CGACCATTCCATTCACGTGCACGAAAGCCATTCACAAACTTGCATAATAT
TAAAACAACAGCATGAATTATCTTTAAGAATGACAATAACAAAATCTCTA
TTATCTACACATCATGTCAAATACCCTCATGAGGAGAGGAGAGATGAATG
GAATAGAAGTTGCTCGCTCAGGTAAAAGACTTAATTAAGAGATATTCTAA
GAAAGTTCAGTCTGACAGGAAAAAAAAGGCAGAAGGGTTGTATTTTTCTG
AGAAATCTTTTCTTTTTACCAATACAATCTAATACAAAGAGTCCCCTCCT
GCCCAGTTGGCGACCGATCTAATTGGCGACCGAACGTCTTTAAACCCAGA
AAACTCATACAAAAACAAACCTCTGGAGAATTTCTTTTGGTAGTTATATA
TGCCTTGACCTATTTCCCATACTGTATACCAGGCGCCTGCGCTCGATAGG
ATCGATCATCGGAACGGCTCGATGACGGATCGATATATGATCGATGGATT
ACTTAACGATCCGAATAGGAGAGATCGTTTGGTTTTTTGTACAAACCTCT
GTATAAACTATGGGCTAGCAACCAGTTGCTAAGATATTGGCTTGAAATTG
AAAATTAAACCACTGAAAACAAAAATAAAATTTTCCCGCACTCTGAATCC
CATGACCTTGATATATGACAGTGAGGCTGGAACTTCGATTTTTGAGGATT
ATGATTTTATTTACCAGTTTTTTAGCGATTTTTGCCTCGCTAGCCCAAAT
CTCGCAACCTCTTTACTAGAGTTTTTCAGCGTTCCGAAAAAAACGCATAG
CAGAAATGTTTTCATCTTCACAGGATCGTTTCTCAACAACAAAATACATC
TTTTAGTCTTTGGGTTTGTTTCTGACGTTTTTTCTTCAAAGAATATCGAT
CACTTTCCTTTTCCCCTTGAGCGCGCGAGAAAAAAATTATTAGCTTGTTT
TCGTGCGGGCAAATAAAGATGAGGCGGCAATCTTGCACTGAGGGTGCTAC
TTAGTTTCCGCCCTATTTTGCGCCCACGATATAATGGTCCAAACACGGGG
GTAGTCCAAATGATAAACTATGTCGTTCTGTAAGTGTTTATTTTCTGAGA
GATACAAATAGTATATTTGAATATTATTAACTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGAACTCCCATAGGAATTCCGATACCTAACCCGATTGGTTAATTTCGG
AACGGCTTCAAGAAAGTCATAATGGCAGATAATTTTAAAAGTTTCTGAGG
GAATGTGAGAATTTATCGATGTTGATGGCTTGTTGATTCTTTAAAGAAAA
AAGATAACAGGTATAGCTTTTTCTAATCCTGGAATATCTAGGTTCCAGCT
ACACTGTATGAGTTTGAGTCTAAACTGATAGTGCACCTTACAGAAGCACT
CTTAATAGAAGAGACCGCATTCTCGTTTTAGTTCTAGTTGCAGATTTTTA
TTTGAAAATCACATAAACTTAAAGAATATTTATGAAGAATGTGTTTATGT
GTCGACTAATGTAGTCACTATATTTGTTGAAATAGGAAATAGAACAGAGG
TAACTCCAGCCTTGCCTTCAAATTGTTAGCTGTCAGGAGGTGTTGAAAGA
ACTGAAATCTTATTTACATCGAAATGAAAACACATAATTTAATGATAACT
GTTTGTAGAATGCACTATTTTGAGTTAAAGAAAAAGCAGCAAAAATTTTA
TGCAATGGCTCCAAAAACATATGAAGAATTGGGCTTGCAAGTTCCTTATC
TGGTAATATCCATGTAGAAATTTTCTTCTGACACACCAAAGCTTTCAAGA
TCAGGCAAATTGTCAACATTGTTTAGGTTACAGAATTCTGCCTTGTATCG
TCACACAGTTTACAGTTGAATTCTGTAGTTGATCCTGACAGTTCATCAAA
GGGCGTCAAACATTGGAAAATTGGCCTCCAGGTTGATAAATTTTTATTTT
TTCATTTAGATGAGAATAAGCTCTTAACACTGTTTTTTTTCAAGCACCCA
AATGCCCCGTTAGATGGTGGCATTAAACTCAATTTGAAAGAAAATTTATA
AGTTTATTATTCTCTTCTACAAGAAAAAAGTAAAAGATCAAATTTAACCA
TATAAAAAAGTCTCTCTTCCCCTTTTTAAAATGAATGGAACCCATAGTTA
GAGTTTAGAGTTTCATCATCTTCTCAATTAAAAAGAGCTATAATTTAGAT
ATTTTCAGTAATTTAAATAACTTTGATCATTTATAAATACTAGGTATATA
TACATTCAACTTTTGCTGATTCAAAGTGCCAGTTGAGACAAAATTTGCTT
AGCTTTTGGGGGCTCAAGGCGCCCCCCCAGCCCCCAGTCTCTGTTACCCA
GCCTTCGGCTGGATAGTGCGGCTTACGCCTTTGTTAAAAACTCAATTTGA
AAGTATAAGCGGAGGCATTGCTTAGTGCTTGGAAAAACCCCTGCCTTATG
TGTTGTTAATACGCCCTAAAGCGTTGACAGTTAAGCTAGGCTAACTTAGC
TCTTTGCTCCTTCCAAATTCAAGAATACAATGCTTAAATTAGTTGACACA
TAAAACATGTTATTCAAAAATATTCCCCATGCAACGTTTATATCGAAATC
TGCAAGACAATGAAATTGATCTTTTTTACTCAGTACTTCTGTAGAAGTTT
TTTTAAATTTCAACCAATTTGTGCTGCATTAATGATAAAGGGGGCCAACT
GGCCCAAATCTTTTGCGCTAATGGCTTTTCTGAGCCTTGGGTGGTAGGCT
GAGCCTTAGATGACAGGGTCCTGCTTTGGATGATAGGTGATCTTATAACT
GTCACCCTATTTTTAAGCATCATCTTTATTTGTTTCAATCGGTGATTCTA
AGGGTTGAATTTTTTTGTATCTTAAAAAGTTTTCAAACAAAAGTAGGAAT
TTGATGGGAGAGTTACATTGTCAGCAAATCTGTTCTGATTGGATGAAAGT
GCTTAACCTTTATTTGATTGAGTGTTACTTTTTTTAGGGGGTAATGAGCT
GATTGATATGTGCTGCCCAAATTTTGATATCTTTTAGCCCTATTAGCCCC
AGGGTGGAGTTCTTTTGTGTACATCTCAGAGGAAAATTTTGAAATGACTT
GAAACTTTCTGACTTTAATAAAATCCTATTGCAAGTCTTATTAAAGGGTA
GCCTTTTGTCTTTCAGAATCTTCAAACAGAATCTAAATATCTTTAGTGGT
TTGACTGTTGTAGACATTTTTGTAAACCATGTATTTTTCCTTTTTTCTGA
GGTTGACATTTTGTGATTTTTTTCTTCCTGGAAATTTGTGTCATGATGGA
GAACATTTGTACCAAATTTCATGACCATAGCTGTTATGTATTATGGTTGA
TCGACTGTTGTTTTGTCGTTTTTTACTACTTTATAGAGTTAACCAGCAAT
AAACTTTGTTTGATATCTTTTGATTGAATTATTATTTTTGAAAATTTTTT
TGACAGTGATGATGATCTAAGATAGAAGAATCACTCCTATAAAAATGGTA
ATTATACCACATTTCTACAAGAAATTGATTTTTTTCTTCTTCATTTTTCA
TTTTCATTTTCCATTTTTTTTCCAATTTTTTTACTTGATAATATTCTACT
CATGAATATCTTTTTAACGAGCACAAAATCGTAACTTGATTCGAATTCTA
TCAAAAGTTACAGCCATTTTTGTCTCCAGCTGCAAATTATTTTGAGACAG
ACTTTAGCTATCATGTTTGCTTACTCTTATCCTGAGGTATTAGCTTCTCC
ATGCTACAATCGTTCACTAAATATTTGAGACAAAGGGGAGTTCCCGGTGT
AATTTTGAACACCACAATTGATTATTAAGTGCCTTAAACTACAGTTGGAA
AGTAGAGTTTTAACTCTTAGTTTTAACATGAGACTTAAGACTTAATGATC
TTAGGATTTAAAAGCTCAAATTTGCTCGAATGAAGTACACTAAAATCTCA
ATATATTTCGAGGGACATTGTAGCACAAGAAGGGCACTCGCATGAGAAAA
GCTTTGTTTTTATGCTATAAAAATGGTGGCTATAAATAAAAACAATCACA
TTTGAAAAATATAGCAAAAGATGATGTGATGGGAAACAAAAGAAACAAGA
GAATCGGATGGGGAAACTGGGTGCTGGGGTAAAAAAAATGAATAATTTGA
AAATTTTGAAATATTCAATTTGGAAAATATACACAGCCCAAAGAGCCTCA
ATCAAAACAGCTAGGTACCCCCAATTAATAGGTAGCCCCAAAGAATTGCA
AAATATTAGCCCCAATTCCTAACCTGGCCTAGGTGCCCTTTAGATTTCTA
GGGGGCTGAAACCACGGTTCTGGGGATACAAAAATCAAGAAAGCTTGGGA
TTAATAGGGTTAAGGAGCAAAAAGTTGAAATTTTCCTAATTCCCTGACCC
TTTGTTTTCCATACCCAGATGATTTCAAAAACATGACTTTATCACAGTCA
TATCATTTGAAGTATTTCAGATGATGATCTTACCAGTCGAACCAAATCAA
ACGCAATCAACCAATTGATATTTTATTGCGTTTGGTTGAGATTCTATTGC
GTAAATTTGGTCATGAAAGAATTTCTGGAATACAAATTCCTATGACGTCA
CTTTGATCTGCATCATTTATACAAATCATTGTGTCATTTTGTTAAATAGA
CTATATGGCCCTCTCACTCGGATAATAATATGTAATTTTAAATTAACAAA
AATTTGATTAAGAGTGAAACAGGAGACCAGACCTACATCACCTCCATTTT
AGCTATAATTCACAAATTTTCAACCAAATTCCATTTATCAAAAACATTTG
AATTTTGTTGTTATTAGAAGTTACTATTTTTGCTGTGTCTACTGCCAATC
GTATCTAGACTAATTTCACCTGCCTTCACCTCATTGTTTTCAAAGATTTA
GTCTCCTGGTATCACACATTATTGTCGAAACACACAGTAGAAAATTGTCT
CTTGGAATTATTACTATACACTCAAAACTAAATACTAGTTTTCAGCTATA
ACTGAGGAGACTGTTATTCGATTTTGATTTGGTCAATAATTCAGACAGTT
CTCATCAAATATTGTATTTCCAACTGTTACGCAATATTTTTCTCTTGTTA
TTTTAGTAGCCACAGAGTACATAAAAAGATTATAAGAAACAAACACTAAT
TTTCTGGTTTGTTGTTTTAGGTTGCATTTAGTGGAGTGTCTTATTTTTAT
CACAACACTTTTGCACGTGATTGTTTCTTCTTTCATAACTTTTACAATGT
CTCATCATTTTATGTAACAAGTTTCACATGAATTATTAAATTATTTGTTT
ATTCTGTGTTAAAACAGCTGAAAACAGGGGTGTATTCAGTCAAGTAGAGA
GTTTAGGTAAATTTATTATTCATGAATATTTTATGAGCACTAGATAGTCC
ATGTAAATATTCAAATCTAAATTTATTGAAAAACNACTAGATAGTCCATG
TAAATATTCAAATCTAGATTTATTGAAAAACTTGAATTAGGAAAAGTTTT
CACCTCTATCATTGCATAACATTGTTAATTTCATAAACATATTTTTCAGG
ATTGTCAAAGGTGTAGGGTAGAAATCTTCGATAGAACCTGATATAAGACC
TAACAAAAAATTTCATTGGACATTGCTTTCAGTATTTTATCAAAGTTGTT
ACTCTTTTGCCTCTTTTTCGTTTTTATGATAAGCTTTTTAAGATTTCAAC
TCACCACTCCCCTATTTTTATCTTACTTTATTTTTATTGAACCTTTCTCT
TAGTTTTAATCAGACTTTCTTCTGTTTTGTTCTTCTCACTTTAACGGAAT
CATTTATTCTACTCTACCTTGTCTTTTCGTCCCTCACTTTACATAGAGGC
CTACAACGGAGAAAGCTGTTTGAGTTTTATTTTAAAGGACAAGCAAAAAG
TGTATTATGATCATAACTTGTGACTTTAACATTTTTTCTTGGTTGATTGT
TGCTGGTGTATACTTCAATGGTATTATCAAGAATGGCTTTCCTTTACAGG
GTAGTTTAATTATAATATGTAAGAAAATTATTTTTCAGCACAAAATATTA
CAATGAATTTCCCAATCGCCCCAATAGTTTTCTCCTCATGTGGATCATTT
CTTGGCCTTGCTTACTTATTAAAAAAGAAGTCATTTCCAAAGTACTTGAA
GGATCCTGGTAGAAGGAACGCATGGTTGTGGCGAAACACATTTTGCTCTT
TGATTCACTCGTGTGCATCTGCTGTGTGGACCTTTTTCTGGTAAGAAAAG
AATGTCTTTTATGAAGTATCACCACTCTAGATTTTGCCTTTTTCTTTGGT
GAATCATCACACAGTTTACACCATGACAAATAGCTACAAAGGGTAGGAGG
GAAAGTATTNCATTCTCTTTGGTGAATCATCACACAGTTTACACCATAAC
AAATAGCTACAAAGGGTAGAAGGGAAAGTATGATTATACTATTAATTTTC
TTTTGAATTTTGTAGTTATTATGATGAGCCAAAACTATTGGGCGATATGG
TGAACACAACAACGAACCTCTCAATACAACTTTTGTCCTTTTCAACAGGT
AAAATTCAGTCAGACTAAATAATCACTTTCAGAAAGTAAGTTTCCAAATC
ATGGCAAATTATACAGTACTAGCCGGTACCCGGCGTCGCACGCCGGTTAA
GCTGTAGCTGAACGCACTAAAAGTCCTTTGGATGTTGAAGCTGGCTTAAA
AAAGCGATCGAAAAAAAAGAAGAAATCTCTACAACGTTTAACTCTAACCT
TCCCCGGGTGTCTTATCTTTTAACCATATTTGGATCGTGTACTGTCCCCC
CCCCCCGTGACATTTAATTTTTTGTTTAAGTCAAAAGTTATAAAAAAGCA
TCGTTTACTGTACCAGTGTCGTTTGAAATGACTCTGCAGGTAGTTATTTT
TCTCGCTTCACTCGCGTTAAATATGCCGTCCAGTTTAAATGACAATTTTT
CAGGAAAAAGTGGGAAGGTCACAAAGAATAGTGCAACTCTTTGTTTTTTA
TCAGATCGAGAAAAAAATAAGACAATTTAAAGTTGCTTTTTTAATCCCTT
GGCATAATTTTTCGAATTTAAACATAAGAATGACAAACTAAACGACGACT
TGAATATTTTTATAAGAAGAAAGAAGTGAACTAATTTTTTCTTATGCTTG
ATATCGTCCTTTGAATGCTGTTGTTGTCCACAAACTTTTTGATTTTTATG
TTTTGATTTACTTTTGAAATATTCTTTTCTATGAAATGAAATTGTTTTGT
TTTGAAAAGAATTTGAATGTCATTTATAAATACGATCGTTAAATACATTC
GAAAACATTTAAAACAAAAGAATAGAGAAAAAGACAACTCTGTGCAAAAA
TTGAAATTACTAAAATGTAGATGGGCCTTAAATTTCAAAACAAAGGCTGA
ATAAAGTCCAAACCAAGCTCTATCCGATCTTTTGCAAATGGCGCGAATCC
AATGGAACAAATTTGTGGAGCAAGAGACTAAAAGTCATAATTTTAAAACA
CAAACAAAGCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
TTTTGCGAATGGCGCGAATCCAATAGAACAAATTTGTGGAGCAAGAGACT
AAAAGTCATAATTTTAAAACACAAACAAAGCGAAAGCGAAAACGAAAGTG
ACACACAGACACACAAAGCACCGCTATTAATATATAGATTAAAAGTTCTT
CCCTCTCAGACGAAGGATTTCCTTCTAAGTGAAGTATATGAAGAGGCTTT
TACGTCTCAAAATTTTGCATCGGAAGTTTAAGAAGGCTAATTTGCTGTGT
TGTTGGATTTAATTAGTACTTGTAACTATTTTTTATTACCAACATTAAAT
AAAGAACAAATAAAATAATAAATGTGTAAAATCCATTTTCCGTCTCAAAC
GAAAAGCCCTGCTTTAACCACTGATTATACCCAAAGTCGTACTAAAAACA
TTTCCATTGATAGTAACACGTCCAATCATTACTATCAAAAAGTCTATTAA
TATTTTTCTTGCATTTTTATAGGTTATTTCATGTATGATTTTCTGGATGT
TGTTCTGAATGATGGCTTTCGACAAGTCTTTATCCTTACTCATCACACAG
CTGTAAGTTGATGTCGATGATCCTTCTATTGTACTGTAGATGTTTTTTTT
TGCTTGAAAGCTCTGTTTACTCCACTTGGACACTTGTGTTTTTTCAGTGT
TGCAACTAAACGGTCCAGTTAAGATAAAACATACTATTTCCTTTTTCGTC
TTGCCAATAAGAGCGTTTTTGGGTCAACAGGACTCACAAACCAAAGATTA
ATTATATTCATGATATGCACCACTGGAGAGTCTTCTTAGAACTTTTAAAA
TTTTCCATCCAATACGTTACTTAAACAATAGAAAAAGTGACGTACGTATT
GGGATGAACAAAAATAGAAAAGTTGCATAGTTTCACGAAGTCATTGCAGT
GGTGCATATCATGAATACCTAGTTGCAATTCTGATCTTTCATGTTTTACT
TTTAGAACGAACTCCTGCTGAAGTTTATTTACTTCATCTTTTCAACTCTT
ATTATTCAGGTAATCACTGCATTCTCGTTGGCACTCACTAATGAACGTTA
CATGGGTTTTGGTGTGTGTGCTTTGATCATGGAATTCAACAGCATCTTCT
TACACATCAGACGTTTGATGAAACTTGTCAATCATTCATCTGGTTGGAAA
AGCATCAATGGGGTTTTCTTATTGCTAACAATGCTCTTTTGTCGTATCTG
CTTATCCTGTTGGATGGTGAGATGGCTTTTGCAGAATAGAGACTTATTAC
AATACAGCCATTATGTTGTTGGGCTGGTTGGCATGGTGATTATGACAGTC
ACCAATGTGGGTCTCATGTACCGTCTTTGGATGTCTGATTTCCATAAGAA
ATCAATCAACAAAAAAGTGCTTTCAGAAATCAAGAAATAACCACTACCTC
CTCCATCACATATTATACTTCACAGATGTCACTCACATCAATGAAAGTAC
CTTTATTAACATCAACTTTCAATTCTGAGTAACGAAGGGAACGGTTCAAT
ATGAGATGACCACAAAAAGAATACCATGACAGGATCATCCTTATCAACAT
TTCACACTCTACATCCCCTGACTTTTTGTATCAGCCACTAGATTTTTTAT
TTGTTAAAACAAGATTTTCTACTAAACGTAGCCAAACGAGGGTCTTAGGT
AACACAAAGTTTTTCAAAAAAGTAACTTGAAACTAGATATAAAATTTTTT
TATCAATTTGTCTGTATTGTATTGGCTACACCAGTACTTTCATCTTGACC
ATTTGTGATGATTAATAGCGGTACAC

Coding sequence (CDS) from alignment at sc0000314:103547..113322-

>TCONS_00018991 ID=TCONS_00018991|Name=TCONS_00018991|organism=Clytia hemisphaerica|type=CDS|length=4020bp|location=Sequence derived from alignment at sc0000314:103547..113322- (Clytia hemisphaerica)
GTAATCACTGCATTCTCGTTGGCACTCACTAATGAACGTTACATGGGTTT
TGGTGTGTGTGCTTTGATCATGGAATTCAACAGCATCTTCTTACACATCA
GACGTTTGATGAAACTTGTCAATCATTCATCTGGTTGGAAAAGCATCAAT
GGGGTTTTCTTATTGCTAACAATGCTCTTTTGTCGTATCTGCTTATCCTG
TTGGATGGTGAGATGGCTTTTGCAGAATAGAGACTTATTACAATACAGCC
ATTATGTTGTTGGGCTGGTTGGCATGGTGATTATGACAGTCACCAATGTG
GGTCTCATGTACCGTCTTTGGATGTCTGATTTCCATAAGAAATCAATCAA
CAAAAAAGTGCTTTCAGAAATCAAGAAATAAGTTATTTCATGTATGATTT
TCTGGATGTTGTTCTGAATGATGGCTTTCGACAAGTCTTTATCCTTACTC
ATCACACAGCTTTATTATGATGAGCCAAAACTATTGGGCGATATGGTGAA
CACAACAACGAACCTCTCAATACAACTTTTGTCCTTTTCAACAGCACAAA
ATATTACAATGAATTTCCCAATCGCCCCAATAGTTTTCTCCTCATGTGGA
TCATTTCTTGGCCTTGCTTACTTATTAAAAAAGAAGTCATTTCCAAAGTA
CTTGAAGGATCCTGGTAGAAGGAACGCATGGTTGTGGCGAAACACATTTT
GCTCTTTGATTCACTCGTGTGCATCTGCTGTGTGGACCTTTTTCTGATGT
CAAATACCCTCATGAGGAGAGGAGAGATGAATGGAATAGAAGTTGCTCGC
TCAGGTAATCACTGCATTCTCGTTGGCACTCACTAATGAACGTTACATGG
GTTTTGGTGTGTGTGCTTTGATCATGGAATTCAACAGCATCTTCTTACAC
ATCAGACGTTTGATGAAACTTGTCAATCATTCATCTGGTTGGAAAAGCAT
CAATGGGGTTTTCTTATTGCTAACAATGCTCTTTTGTCGTATCTGCTTAT
CCTGTTGGATGGTGAGATGGCTTTTGCAGAATAGAGACTTATTACAATAC
AGCCATTATGTTGTTGGGCTGGTTGGCATGGTGATTATGACAGTCACCAA
TGTGGGTCTCATGTACCGTCTTTGGATGTCTGATTTCCATAAGAAATCAA
TCAACAAAAAAGTGCTTTCAGAAATCAAGAAATAAGTTATTTCATGTATG
ATTTTCTGGATGTTGTTCTGAATGATGGCTTTCGACAAGTCTTTATCCTT
ACTCATCACACAGCTTTATTATGATGAGCCAAAACTATTGGGCGATATGG
TGAACACAACAACGAACCTCTCAATACAACTTTTGTCCTTTTCAACAGCA
CAAAATATTACAATGAATTTCCCAATCGCCCCAATAGTTTTCTCCTCATG
TGGATCATTTCTTGGCCTTGCTTACTTATTAAAAAAGAAGTCATTTCCAA
AGTACTTGAAGGATCCTGGTAGAAGGAACGCATGGTTGTGGCGAAACACA
TTTTGCTCTTTGATTCACTCGTGTGCATCTGCTGTGTGGACCTTTTTCTG
ATGTCAAATACCCTCATGAGGAGAGGAGAGATGAATGGAATAGAAGTTGC
TCGCTCAGGTAATCACTGCATTCTCGTTGGCACTCACTAATGAACGTTAC
ATGGGTTTTGGTGTGTGTGCTTTGATCATGGAATTCAACAGCATCTTCTT
ACACATCAGACGTTTGATGAAACTTGTCAATCATTCATCTGGTTGGAAAA
GCATCAATGGGGTTTTCTTATTGCTAACAATGCTCTTTTGTCGTATCTGC
TTATCCTGTTGGATGGTGAGATGGCTTTTGCAGAATAGAGACTTATTACA
ATACAGCCATTATGTTGTTGGGCTGGTTGGCATGGTGATTATGACAGTCA
CCAATGTGGGTCTCATGTACCGTCTTTGGATGTCTGATTTCCATAAGAAA
TCAATCAACAAAAAAGTGCTTTCAGAAATCAAGAAATAAGTTATTTCATG
TATGATTTTCTGGATGTTGTTCTGAATGATGGCTTTCGACAAGTCTTTAT
CCTTACTCATCACACAGCTTTATTATGATGAGCCAAAACTATTGGGCGAT
ATGGTGAACACAACAACGAACCTCTCAATACAACTTTTGTCCTTTTCAAC
AGCACAAAATATTACAATGAATTTCCCAATCGCCCCAATAGTTTTCTCCT
CATGTGGATCATTTCTTGGCCTTGCTTACTTATTAAAAAAGAAGTCATTT
CCAAAGTACTTGAAGGATCCTGGTAGAAGGAACGCATGGTTGTGGCGAAA
CACATTTTGCTCTTTGATTCACTCGTGTGCATCTGCTGTGTGGACCTTTT
TCTGATGTCAAATACCCTCATGAGGAGAGGAGAGATGAATGGAATAGAAG
TTGCTCGCTCAGGTAATCACTGCATTCTCGTTGGCACTCACTAATGAACG
TTACATGGGTTTTGGTGTGTGTGCTTTGATCATGGAATTCAACAGCATCT
TCTTACACATCAGACGTTTGATGAAACTTGTCAATCATTCATCTGGTTGG
AAAAGCATCAATGGGGTTTTCTTATTGCTAACAATGCTCTTTTGTCGTAT
CTGCTTATCCTGTTGGATGGTGAGATGGCTTTTGCAGAATAGAGACTTAT
TACAATACAGCCATTATGTTGTTGGGCTGGTTGGCATGGTGATTATGACA
GTCACCAATGTGGGTCTCATGTACCGTCTTTGGATGTCTGATTTCCATAA
GAAATCAATCAACAAAAAAGTGCTTTCAGAAATCAAGAAATAAGTTATTT
CATGTATGATTTTCTGGATGTTGTTCTGAATGATGGCTTTCGACAAGTCT
TTATCCTTACTCATCACACAGCTTTATTATGATGAGCCAAAACTATTGGG
CGATATGGTGAACACAACAACGAACCTCTCAATACAACTTTTGTCCTTTT
CAACAGCACAAAATATTACAATGAATTTCCCAATCGCCCCAATAGTTTTC
TCCTCATGTGGATCATTTCTTGGCCTTGCTTACTTATTAAAAAAGAAGTC
ATTTCCAAAGTACTTGAAGGATCCTGGTAGAAGGAACGCATGGTTGTGGC
GAAACACATTTTGCTCTTTGATTCACTCGTGTGCATCTGCTGTGTGGACC
TTTTTCTGATGTCAAATACCCTCATGAGGAGAGGAGAGATGAATGGAATA
GAAGTTGCTCGCTCAGGTAATCACTGCATTCTCGTTGGCACTCACTAATG
AACGTTACATGGGTTTTGGTGTGTGTGCTTTGATCATGGAATTCAACAGC
ATCTTCTTACACATCAGACGTTTGATGAAACTTGTCAATCATTCATCTGG
TTGGAAAAGCATCAATGGGGTTTTCTTATTGCTAACAATGCTCTTTTGTC
GTATCTGCTTATCCTGTTGGATGGTGAGATGGCTTTTGCAGAATAGAGAC
TTATTACAATACAGCCATTATGTTGTTGGGCTGGTTGGCATGGTGATTAT
GACAGTCACCAATGTGGGTCTCATGTACCGTCTTTGGATGTCTGATTTCC
ATAAGAAATCAATCAACAAAAAAGTGCTTTCAGAAATCAAGAAATAAGTT
ATTTCATGTATGATTTTCTGGATGTTGTTCTGAATGATGGCTTTCGACAA
GTCTTTATCCTTACTCATCACACAGCTTTATTATGATGAGCCAAAACTAT
TGGGCGATATGGTGAACACAACAACGAACCTCTCAATACAACTTTTGTCC
TTTTCAACAGCACAAAATATTACAATGAATTTCCCAATCGCCCCAATAGT
TTTCTCCTCATGTGGATCATTTCTTGGCCTTGCTTACTTATTAAAAAAGA
AGTCATTTCCAAAGTACTTGAAGGATCCTGGTAGAAGGAACGCATGGTTG
TGGCGAAACACATTTTGCTCTTTGATTCACTCGTGTGCATCTGCTGTGTG
GACCTTTTTCTGATGTCAAATACCCTCATGAGGAGAGGAGAGATGAATGG
AATAGAAGTTGCTCGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010645XLOC_010645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018991-exon-sc0000314-1575043694:113274..113322TCONS_00018991-exon-sc0000314-1575043694:113274..113322Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1575043694:112952..113146TCONS_00018991-exon-sc0000314-1575043694:112952..113146Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1575043694:106633..106834TCONS_00018991-exon-sc0000314-1575043694:106633..106834Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1575043694:106325..106407TCONS_00018991-exon-sc0000314-1575043694:106325..106407Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1575043694:104771..104850TCONS_00018991-exon-sc0000314-1575043694:104771..104850Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1575043694:103547..104313TCONS_00018991-exon-sc0000314-1575043694:103547..104313Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1510915933:113274..113322TCONS_00018991-exon-sc0000314-1510915933:113274..113322Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1510915933:112952..113146TCONS_00018991-exon-sc0000314-1510915933:112952..113146Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1510915933:106633..106834TCONS_00018991-exon-sc0000314-1510915933:106633..106834Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1510915933:106325..106407TCONS_00018991-exon-sc0000314-1510915933:106325..106407Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1510915933:104771..104850TCONS_00018991-exon-sc0000314-1510915933:104771..104850Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1510915933:103547..104313TCONS_00018991-exon-sc0000314-1510915933:103547..104313Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1491911889:113274..113322TCONS_00018991-exon-sc0000314-1491911889:113274..113322Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1491911889:112952..113146TCONS_00018991-exon-sc0000314-1491911889:112952..113146Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1491911889:106633..106834TCONS_00018991-exon-sc0000314-1491911889:106633..106834Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1491911889:106325..106407TCONS_00018991-exon-sc0000314-1491911889:106325..106407Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1491911889:104771..104850TCONS_00018991-exon-sc0000314-1491911889:104771..104850Clytia hemisphaericaexon
TCONS_00018991-exon-sc0000314-1491911889:103547..104313TCONS_00018991-exon-sc0000314-1491911889:103547..104313Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018991-proteinTCONS_00018991-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:103547..113322 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83123	2.18983	13.0385	18.9814	2.29529	2.66244	2.2512	0.902147	0.434661	1.99337	0	1.1415	0.662936	0	0.458062	0.801765	3.09961	2.12693	0.362631	0.379467	2.10692	2.44254	1.08972	1.87444	4.29193	3.26877	0.564532	0	0	2.31458
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00018991 vs. Swiss-Prot (Human)
Match: TLCD1 (Calfacilitin OS=Homo sapiens GN=TLCD1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.809e-16
Identity = 64/226 (28.32%), Postives = 110/226 (48.67%), Query Frame = 1 
Query:  301 SFLGLAYLLKKKSFPKYLK-DPGRRNAWLWRNTFCSLIHSCASAVWTFFCYYDEPKLLGDMVNTTTNLSIQLL-SFSTGYFMYDFLDVVLNDGFRQVF-ILTHHTAVITAFSLALTNERYMGFGVCALIMEFNSIFLHIRRLMKLVNHSSGWKSINGVFLLLTMLFC-RICLSCWMVRWLLQNRDLLQYSHYVVGLVGMVIMTVTNVGLMYRLWMSDFHKKSINKK 966
            +F  L   L +   P +++ DP R   W W N   S  HS  S +W   C +  P +L + + T  +LS  LL  FS GYF++D +D+V +   R  +  L HH   + AF   +    ++G GV  L++E ++IFL IR +MK+ N           ++ L M F  R+    ++  + L+  +      +++G+  ++++ V  +    RL  SDF  + + KK
Sbjct:   18 TFRALRRALCRLPLPVHVRADPLR--TWRWHNLLVSFAHSIVSGIWALLCVWQTPDMLVE-IETAWSLSGYLLVCFSAGYFIHDTVDIVASGQTRASWEYLVHHVMAMGAFFSGIFWSSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQDHLLYRVNKYVNLVMYFLFRLAPQAYLTHFFLRYVNQRTLGTFLLGI--LLMLDVMIIIYFSRLLRSDFCPEHVPKK 238
The following BLAST results are available for this feature:
BLAST of TCONS_00018991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLCD11.809e-1628.32Calfacilitin OS=Homo sapiens GN=TLCD1 PE=2 SV=1[more]
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