TCONS_00019005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019005
Unique NameTCONS_00019005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019005 ID=TCONS_00019005|Name=TCONS_00019005|organism=Clytia hemisphaerica|type=transcript|length=418bp
atttttttagagtAAAAAATGGATATTTTAGGGAGAATATTATTATCTGT
ATCAATTTTATCTTTGCTACATGCTGGCTTTTCTACCATACAATATAAAA
CTTATTTGAAGTTGACTGAGGAAGATTTTCAGCATATCCCAATAGATATT
ACTGTTCAAGTCTTATTAAGTGTTGTAATGGCCATATTTGGTATCATCAG
AGTAGCAGGCGAATTGAAGGACATTCACATTGCCGCTGAACTGGCTTCAA
AATCATGGGAAACTGTTGGCAATCGTcaatctttttataattttaatcAT
CGTGGGCAACGTCTTTTCCAAGACTTGCCTGAAGATTGAATTTTAGTAAC
TTTTTTTAATCTTAGTTTTGCCATAAACATGTTTTAGATTTCAATTGTCC
TGTGTATGAAAAATGCgt
Run BLAST on NCBI

protein sequence of TCONS_00019005-protein

>TCONS_00019005-protein ID=TCONS_00019005-protein|Name=TCONS_00019005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MDILGRILLSVSILSLLHAGFSTIQYKTYLKLTEEDFQHIPIDITVQVLL
SVVMAIFGIIRVAGELKDIHIAAELASKSWETVGNRQSFYNFNHRGQRLF
QDLPED
Run BLAST on NCBI

transcript from alignment at sc0000314:283968..285013-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019005 ID=TCONS_00019005|Name=TCONS_00019005|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at sc0000314:283968..285013- (Clytia hemisphaerica)
ATTTTTTTAGAGTAAAAAATGGATATTTTAGGGAGAATATTATTATCTGT
ATCAATTTTATCTTTGCTACATGCTGGCTTTTCTACCATACAATATAAAA
CTTATTTGAAGTTGACTGAGGAAGATTTTCAGCATATCCCAATAGATGTA
AGTAAAAAAAGGATCCTTAAGTTTGTCTAATGTCGACACCCCCTTCTACT
TTCTGCACCTTTTTTAAAGATGAGAATGAAGGTCTGAAGGTTTAAAATGA
ATGTCATAATCACTGATTGACTAATTTCTATACCTATAATTCTAAATTGC
TGACTCCATCCATTCTATCTTTCTTTATCAGTGCCAAAAATATTTTGCTG
TTGGGAATATATATATAGTTTTTAGTTCCAACCCTTTGTACATTGGGTGC
AAAATTGAGTAGTGTAGGTAGACCACTCGATAGATAATGTTCTTTAAAAA
AAGATGAAATTATACAGCCCAGTAATCTCCCATAGTTTTACTTCCCTTAA
AAAAGTGTTTAATTTTTTCAAGATTTTGATGCAGACTGATGTATTTTTAT
ATATCCTTTCCTGTTTTTCAACATGATTCCTTTAGTTTAGTCCAAATCTG
CACAAAGGTACAATGTGGAATATCGGCTTTGATCAGCCTACCTATTACCT
GTTACTAAGTTGTTTTTTTACCTCACTTCAAATTCTAACGTCACAAATTT
GGAATCTTTATTGAGATTGACGGATTTAGTTACAAAAAAATTATAAAATC
ACACTTTTATTTTGATCAATTTTAGATTACTGTTCAAGTCTTATTAAGTG
TTGTAATGGCCATATTTGGTATCATCAGAGTAGCAGGCGAATTGAAGGAC
ATTCACATTGCCGCTGAACTGGCTTCAAAATCATGGGAAACTGTTGGCAA
TCGTCAATCTTTTTATAATTTTAATCATCGTGGGCAACGTCTTTTCCAAG
ACTTGCCTGAAGATTGAATTTTAGTAACTTTTTTTAATCTTAGTTTTGCC
ATAAACATGTTTTAGATTTCAATTGTCCTGTGTATGAAAAATGCGT

Coding sequence (CDS) from alignment at sc0000314:283968..285013-

>TCONS_00019005 ID=TCONS_00019005|Name=TCONS_00019005|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000314:283968..285013- (Clytia hemisphaerica)
ATTACTGTTCAAGTCTTATTAAGTGTTGTAATGGCCATATTTGGTATCAT
CAGAGTAGCAGGCGAATTGAAGGACATTCACATTGCCGCTGAACTGGCTT
CAAAATCATGGGAAACTGTTGGCAATCGTCAATCTTTTTATAATTTTAAT
CATCGTGGGCAACGTCTTTTCCAAGACTTGCCTGAAGATTGAATGGATAT
TTTAGGGAGAATATTATTATCTGTATCAATTTTATCTTTGCTACATGCTG
GCTTTTCTACCATACAATATAAAACTTATTTGAAGTTGACTGAGGAAGAT
TTTCAGCATATCCCAATAGATATTACTGTTCAAGTCTTATTAAGTGTTGT
AATGGCCATATTTGGTATCATCAGAGTAGCAGGCGAATTGAAGGACATTC
ACATTGCCGCTGAACTGGCTTCAAAATCATGGGAAACTGTTGGCAATCGT
CAATCTTTTTATAATTTTAATCATCGTGGGCAACGTCTTTTCCAAGACTT
GCCTGAAGATTGAATGGATATTTTAGGGAGAATATTATTATCTGTATCAA
TTTTATCTTTGCTACATGCTGGCTTTTCTACCATACAATATAAAACTTAT
TTGAAGTTGACTGAGGAAGATTTTCAGCATATCCCAATAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010649XLOC_010649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019005-proteinTCONS_00019005-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019005-exon-sc0000314-1575043694:284867..285013TCONS_00019005-exon-sc0000314-1575043694:284867..285013Clytia hemisphaericaexon
TCONS_00019005-exon-sc0000314-1575043694:283968..284238TCONS_00019005-exon-sc0000314-1575043694:283968..284238Clytia hemisphaericaexon
TCONS_00019005-exon-sc0000314-1510915933:284867..285013TCONS_00019005-exon-sc0000314-1510915933:284867..285013Clytia hemisphaericaexon
TCONS_00019005-exon-sc0000314-1510915933:283968..284238TCONS_00019005-exon-sc0000314-1510915933:283968..284238Clytia hemisphaericaexon
TCONS_00019005-exon-sc0000314-1491911889:284867..285013TCONS_00019005-exon-sc0000314-1491911889:284867..285013Clytia hemisphaericaexon
TCONS_00019005-exon-sc0000314-1491911889:283968..284238TCONS_00019005-exon-sc0000314-1491911889:283968..284238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:283968..285013 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
123.408	120.011	61.1195	66.5652	51.9642	37.6259	86.6414	86.4248	103.565	104.893	93.7288	98.1296	68.0759	72.6906	85.594	79.8563	84.8688	91.9511	58.4651	45.6958	96.0125	83.0959	163.88	135.72	52.4889	61.9721	94.5009	83.4653	117.002	106.729
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018937Magnesium_transport
Blast
[Close]
BLAST of TCONS_00019005 vs. Swiss-Prot (Human)
Match: MMGT1 (Membrane magnesium transporter 1 OS=Homo sapiens GN=MMGT1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.061e-21
Identity = 36/82 (43.90%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   91 QYKTYLKLTEEDFQHIPIDITVQVLLSVVMAIFGIIRVAGELKDIHIAAELASKSWETVGNRQSFYNFNHRGQRLFQDLPED 336
            Q+++Y++LTE++ + +PIDI +Q LL+  +  +GI+ +AGE KD+   +EL +K+++T+ N  SFY FNHRG+ LF+  P D
Sbjct:   26 QHRSYMRLTEKEDESLPIDIVLQTLLAFAVTCYGIVHIAGEFKDMDATSELKNKTFDTLRNHPSFYVFNHRGRVLFR--PSD 105
The following BLAST results are available for this feature:
BLAST of TCONS_00019005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMGT15.061e-2143.90Membrane magnesium transporter 1 OS=Homo sapiens G... [more]
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