TCONS_00019007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019007
Unique NameTCONS_00019007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019007 ID=TCONS_00019007|Name=TCONS_00019007|organism=Clytia hemisphaerica|type=transcript|length=248bp
gaacaacaaattaaattggtctcgcctaatatACATATTTGAAAATGCAC
ATAAATAGAGAAGTCTTAAATTTAGATAGATGTTTCTAACAGACCGGAAA
AGAAAGTGtccgaaaattaaaaaattaaaaaatttaaatagtAAATTTTC
AGCAAATTCACCTAATTTTTTGAAGTAGTTTTCACATCTAGATAAAAAAA
TCGAACACAATCCCCTCTACTAATGTGTCGCACCCGtcgaggagtaga
Run BLAST on NCBI

transcript from alignment at sc0000314:38..285

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019007 ID=TCONS_00019007|Name=TCONS_00019007|organism=Clytia hemisphaerica|type=transcript|length=248bp|location=Sequence derived from alignment at sc0000314:38..285 (Clytia hemisphaerica)
tctactcctcgaCGGGTGCGACACATTAGTAGAGGGGATTGTGTTCGATT
TTTTTATCTAGATGTGAAAACTACTTCAAAAAATTAGGTGAATTTGCTGA
AAATTTactatttaaattttttaattttttaattttcggaCACTTTCTTT
TCCGGTCTGTTAGAAACATCTATCTAAATTTAAGACTTCTCTATTTATGT
GCATTTTCAAATATGTatattaggcgagaccaatttaatttgttgttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010651XLOC_010651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019007-exon-sc0000314-1491911889:38..285TCONS_00019007-exon-sc0000314-1491911889:38..285Clytia hemisphaericaexon
TCONS_00019007-exon-sc0000314-1510915933:38..285TCONS_00019007-exon-sc0000314-1510915933:38..285Clytia hemisphaericaexon
TCONS_00019007-exon-sc0000314-1575043694:38..285TCONS_00019007-exon-sc0000314-1575043694:38..285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:38..285 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37392	1.5433	0.895959	0	1.06712	0.843255	4.0694	0.952431	7.33502	0.825964	1.6034	2.10803	0.526274	2.18616	0	2.411	1.78209	1.21773	0	8.80232	15.3016	14.554	2.72189	6.59892	0	0	4.34016	3.47395	6.14803	12.5277
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top