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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019026 ID=TCONS_00019026|Name=TCONS_00019026|organism=Clytia hemisphaerica|type=transcript|length=192bp
GTTGTGCAGTCAATATCAAGGCCCTCAGACCGTTTTCTCCAGTTTCTTGC
CCCGGGTGCACGGGCTTGGTCATGTggatttgttttaaaaagaaatgatg
TTCCATCGATAAACATGCCTATCTCTTCCCTCCAAAATTCTTTGCTCTTG
CGCATGTTCTGACGAGCAAACTTAAGGCGTTTGCGCAAGTCN Run BLAST on NCBI transcript from alignment at sc0000317:364081..372431+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019026 ID=TCONS_00019026|Name=TCONS_00019026|organism=Clytia hemisphaerica|type=transcript|length=8351bp|location=Sequence derived from alignment at sc0000317:364081..372431+ (Clytia hemisphaerica)
GTTGTGCAGTCAATATCAAGGCCCTCAGACCGCATTCTCCAGTTTCTTGC
CCGGGGTGCACGGGCTTGGTCATGTGgatttgttttaaaaacaaacgaTG
TTCCATCAATAAACATACCTATCTATTCTCTTAAAAATTCTTTGCTTTTG
CACGTGTTCTCACGAGCAAACTTGAGACATTTGCGCAAGTCCGTGGCCTT
TTTTCCGCAACTGTGAATACTTATAACCGGCTTTGTTCAGCCAGGACTCT
TCTAACAGTATCAGGCGACAAATACATCCTCCGGCCTCCACTTGTAGTCA
CTTTACAGTGAATGTTTCAATATCTCGTCAAAGCTGGGGCACCTTCCGGA
GAATCTGACGTCTATCATGGGCGGTAACTTTGGACGGTCTTCCTTTATTT
TCATGGCGCTTGTCGGTTTGGACCTCCAACGAGCGATTAACATGGCGATA
TATTGTAGCGCGGTTATACTTGGGGAATTGTTTTCTGGTCTGCGGTATTA
AAAGTTTTGGCTCTTGGTATAAAAGTCTCATATAAAGTGATTCCCTTTCA
GTTACTTTGTTAGTTGTGTTGatactcttttttttcttttttttcttttt
ttgtgaaaaaaataaaacattataACAAATGAATTATTTTAACAAAcatt
ataccttatcggggaaaaaatgtcggagttttatttagtcgggttttttt
ttcgtcggggaaagatttcgtcacctagaggcattttggTCACTTTTCCc
ctaccaaaatttcaaattcgtcactttcaccggactaaattgtccaaaag
aaatggtttccttcactgcTAGAATTCGATTAAGGCAACAATTAAAGCGt
gtataatattttgaaaaatagagtAATTGAACACGGTTATCGCAACCATA
TATCTTAAAGTTACCCAATCACGTAAGAATACAAAGATCTATTTTGCAAC
CAGAAACTCtgtttattttgttgatttgaattatttttcagatAGTTTTT
GCAATTATTTTAGTTATTGCTGCATGCATACCAATATATTTGTTTTGtat
aatttcagaaattttataaataaattatttgtatattttgaaatattttt
gtataatGATGACATAAAAAATTGTAAACTTctcattaaattcaaaattc
ttttcaaattacTTTTGAAATCAATTATTGTACCTTAAAGTCGAGATTGT
ATCACCTTTTAAAGCTAAACATGTAGATGTTCCAGATGGTAATAAAGTTA
acgtctcaaaagtatgtggacacttcacttttttgacaatttcttaGCAT
CATTGCGTTCTAAATTCGTGTATTtcttttgctctaaaagagttgaCAAT
TTGAGAGAAATGCACTGTATAGTAAtgaatttcaccaatttttcgttgca
ctgtaagggtgcaattttaaaagtcaTTTCGCCGCACATTCCATCATTTA
TATTAGTAAACCCCCGGGATTCCAGCACGAAATCTAACACAAAACAATAA
ATACACCGACCTGATATAAGGATATAAGACATGTTTCTGatatcatggag
gtataaagaaagacaggagaagtatgctattgtaaccaagctcgccctac
gattaaaaaagttacgatgtatgcatgctcNAATACAGAGTGATATTATA
ATCCAGATAAGAATGTTACTATAAGTCTTGTTTAATAGTGTTGATAATTT
caagatatgctttcatttcaatttccaaactattttctcaaaaaaattta
attttattatcaggtaggtccaaacaGCCCTGATAACGATGatagaattt
tgtaaaaattgaaagattttctttgcatttttaaattaaagttaCCCAAT
CAAAGAAGTTTTTTCGGACAAAATTTGGTTAGCGAGCAGATTTATCGGAA
CGTTCGGCTAAAGATAAAACAGGACAACTTAACCGCTAATAATAATGAAG
ACTTACCAGGAAGACACATCGCCCGGTTGGCCTTCATCTCATCGTTTATT
CTGTATATTTCCAGTCCTAATTTCTCTTCGACTCTTCCGTGGCTGTGAAA
TGTTATATAACGAGGATCTGTGTTCTCTTTCACAGCAAACGCATGAACCG
TGTAGTTGGAATGTGATTCCATGAGACcaaatttctagaaaaatgATAAG
TTTTTGCTTTTTGGTAATTTAGCACAGTTAGGATTTTTTCTCCAAGATTT
CAGGAAAAAGGTGGGAGTGGAAAATGCTTACAATCTTTAAATTCCGACTC
GAACAAGTCTTTGATCGGATCACCGAATATCTGGCTTTGTTCCCCAAAGC
CTGGTGTTGCGAAGTGGGTAAAGTTGTAaccgtttttatttttcttcgca
aacaGTGTGATGCTGTGCATCTCTTGGTTCTGATGGAGTCCTGTAGAACA
ATTAAACTATACTATATAACATATCTcggattttcgcgaaaatttaaatt
tactttaccGAGAAATCTTGAAGTAATGATCAAAAGGAGAATAGATAATA
AAGTAGTACATTTGTCTGCCAATCATGCTTAACATACGTTATTCGGGTCA
TTCCCGGTGGTACACAATCAATTGGTCGCTTCTTTTTCTTGACGAACCGG
TGATGACCATTCTTACACAGACACCCTATGGTTGTTGAATGTGGCCAATA
CGTCGTACGTAGGACATTTCTAAGAGTATGAAAGGGAAGTTTTagaggaa
aaaaaatttaaacaaaatatttgtATGCAGCTATTTTCAAAACTTATTGG
TATTCATTTTcatatttcatttaattttcgagaaaaagaGGCCCCACAga
gtacaaaatgaaaaattatcaatgtaattgtaaaaatattcaaacatttt
catcttcNaaatgaaaaattatcaatataattgtaaaaatattcgaacat
tttcatcttcattcagcATGTTTCCTACTGTCTATTGCTTGTTGATATTT
ATTGTATTTCCCTTTTAGAGAATTGTGTAAAACTTACTACTGTGTCGGAG
GAGGTACGTCGGTGTTTGAATGCATTTCTCAccttttttgccctttttgt
tGAGACAGTCTTGAACAAAGTATCTTAGATCCGTCCTGTCCATGGGTACC
TGTTACTCACATGTTAGCTCTACCAATGAAGCCAGTGCCTTCTCTTCTTC
ATGATCAAGAACGGTCGGACGTCCGTCGTCTTCTGAAACTGTTGCGGTGA
GCTCGCCTTTCGTGTTTGATTTTTCGGTCATTGTACCGACTTTCCTGCTT
CTAAAAATTAATTGACAATTTTGACATACCGATGCAATCATCAAAGACTC
TGCGTGTAAATGCATGGAATGATTTCATATCATTCAAGGTTACCATTCAA
TCTTCTGACGATTGGTTGATTGAATTAGTCCATTGGTTGAaccttgaaaa
ataattttagtttatTAGTTTCTTTAGCTTTGTCTATAAAGCCTTTATAG
CATAAAGATTTAGTCTTTGCAGTGATAGTTTACAGTACCTCGTCCGTAAA
AGTAATGACGAAAAACAACTAAATTTATTGCATCCTCTGGCATTTTAACT
AGAAATCCTGTCATGAAAAGTTATCCCATCAGGTTCCTTTATCAACGGCA
GGGGCATGTTTTGCTGATTTTCTacattgttgttattttctaaTTGCTGG
TCCTCAAAATcaagatgttctccatcatttATAAACATCTAAAGCTTCCT
CATCTTTATCAACTATCTCCTCATGTTTATCAACTATCTCCTCATCTTTA
TCAACTATCTCCTCATCGACATCTAAGTTTATTCTTTCTAATATATCGtg
tgtttcattttattttaagagagggttaacagtttttttttgctcatctA
TTCTCGACTATTCTTCTATGAATACATGATGACATGGCTTGATGTATTGA
GATAAATTTTTTGTGTCTGCTGTCTTGTGTTGTTACAAATGAGGGTGTAA
TCGTGGAAAGATGATGCGTAGAACAACAATCTTAGCAAAATATCATGAGA
CACCTTGCAAATATAGCAAATTTAAGATTCCTCCTTCCCTAAAAACAATG
TTGAGTGCAGTAACAGCTTGATTCCATAAACAACATTGACTGACTTTCCT
CCGTTACCAGACTCTCTTCCTTTGGTTGTGCAGTCAATATCAAAGCCCTC
AGACCGCATTCTCCAGTTTCTTGCCCCGGATGCACGGGCTTGGTCATGTG
gatttgttttaaaaacaaacgaTGTTCCATCAATAAACATACCTATCTAT
TCTCTTAAAAATTCTTTGCTTTTGCGTATGTTTTCACGAGCAAACTTGAG
ACGTTTGTGCAAGTCCGTGGCTCTTATCAAGCCTTTTTCCCGCGACTGTA
AATACTTATAACCGGCTTTGTTTAGGACTCTTCTAACAGTATCATGCGAC
AAATGCATAACTCCGGCTTCCACTTGTAGTCGCTTTACAGTGAATGTTCC
AATATCTCGTCAAAGCTGGGGCACCTTCCGGAGAATCTGACGTCTATCAT
TGGCGGTAACTTTGGACGGTCTTCCTTTATTTTCATGGCGCTTGTCGGTT
TGTTCCTCCAACGAGCGATTAACATGGCGATATATTGTAGCGTATACAAT
GGGGAAATTGTTTTCTGATCTGCGGTATTGAAAGTTTTGACTCTTGGTAC
AAAAGTCTCATATAAAGTGATTCCCTTTCAGTTATTTTGTTACTTGTGTT
AATatactctttttttttctaatgtGAAAAGAATATAACATTATAACAaa
tgtaatcgtcagccgtgcaaaattactcgaatctgattggtttagaggag
tgcgattaatcgttaattgcactattaccactttttgcactcttcggcta
aaaaaaactatgatttactaatgattatttactgacaaTTACCNagggga
cacttttgtccccttattcttttctctttttttactatataataaaaaaa
aagactttttttttcttcaatataaaaaagaacaaaggaattttacgtta
caatagcttcttttaattgaaaacaaaaaaattacactgaaatgttttct
ttttaaacaaaagaaaaaaagagggaaaaatataaaagttagaaaaagat
tctttttcaaaactatgatttactaatgattatttactgacgattacctc
ggaatcgtatgttttgtcgtgcaatNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaatttgcactcgt
ccttcggactcgtgcaaattactattttctcctttgttactcgtgattaa
tcgttaattgcactccaaaccatacgattactagtacaaattatCATAAC
AAACattttaccttatcggggaaaaaaatgttggAGATTAATTTAgtcgg
ttttttttttcgtcggggaaaaatttctatcttcgtcacttttccccgac
caaaatttcaaattcgtcacttttctccgattaaaatttcaaattcgtca
cttccaccggactaaattgtccaaaagaaatggtttccttcactagctcg
aaatcggatcttgtaattcgacgtttaaagcactaatttcggtaaataaa
ggtgtaaaaaaattagatttaaattttggtTGCGCTATGAAATTTTgggt
aaatgttttggtcggtgaaaaatttcgtcactttccaCCGACATTTTTTT
CACCGATAAgatatactttaggcgtacaaactttcgcgagcagaaacttt
cgcgaggacgaaaaatcgcgaaattcatgacatttactttcgcgaattta
acggaaaaatatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNaaatatttttcgcgagcataaactttcgcgaatcaagacgtaa
aattgagaatttccacatgaaaaaatagcttagagacacaaatacttctt
gggttggcttgaagcttgaaacatttgtcctttgacttattagtctttta
gcaggctaaaaagtgccataaaagttatacattttattcaaagttcgaag
ttttacagattttctattttgtcaagaatttttcgcgagcataaactttc
gcgaatggcctttcctagaatttttaaagacatttactttcgcgaaaagg
gccaaaattcgcgaaaatcgcgaaagtttctgctcgcgaaagtttctacg
cctaaagtacaaCTAAGAAAATGATAACTCAGTATTAAAGTTTAAAATCA
AATGACAAAAGATGTGTATTGTGTCGCgttataattttttcaaagtatcg
TTTACGATAGACTGgtgtcgtttataatgcgtgtaatacagtagtatgat
taggcgttatatgataatacgattattgttacgggatatagttatctaca
taaaagattttttgttcctTGCCATGAAGCAGTGTTGTAAGCCTCTGATT
GGTCCGTTTTACAGTTTATTAACAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGGAGAAATGTTTGGAGAAATGTTTGGAGAAATGTCCTCTCT
GCTTCTGATTTGAGACTTGTCTCAAAACATAATCTTAAAGAATTACGGAA
ACCGCAAAGGCGTTTACTCATTCGTTGGGGCAGCactaaacaaaaagtta
aaaaaaactaataacgTATTCTCTGACCTTTTCTTCTCACAATTTCCATC
ATCTGCTTGTTTAGTGATTCAATAGTTTTGTTTATATAGTTCGGGCTCAA
GTTCATTATGGCGTTCTTTACTCGTGTactaaattcttcaaaagtttcTT
TTACAATCCTTTTCGCAAGTGCTTCCTCTTTTAAATTTGTCGCCAAGATC
TTAAAGCATTTTTCAATAACGTTTACATCAGGTGACCGTGCAGGTATTGG
AAATAACTCTGAACCGATATGAGCAAAGGCTTTTCCGGCTGCCTTTGAGG
TCTGCACGGGACAATTGTCCTGTAATATAAGTTTCGATTTATTAGAACAG
CGCGATAAGGCTTCTGGGAATTTTCTCCGTATCATCCGTGAGAGCTTAGC
CCCGTTGAGCTTTCCCTCATATTGTTCACATAATACGACACCTGAGTTGT
GCGATATGCCAACCATAAAGGCGACTGACTTTCCTCCGTTACCCGACTTC
CTTCCTTTAATTGTGCAGTCAATATCAAGGCCCTCAGACCGTTTTCTCCA
GTTTCTTGCCCCGGGTGCACGGGCTTGGTCATGTggatttgttttaaaaa
gaaatgatgTTCCATCGATAAACATGCCTATCTCTTCCCTCCAAAATTCT
TTGCTCTTGCGCATGTTCTGACGAGCAAACTTAAGGCGTTTGCGCAAGTC
N
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019026-exon-sc0000317-1491911889:364081..364100 | TCONS_00019026-exon-sc0000317-1491911889:364081..364100 | Clytia hemisphaerica | exon |
| TCONS_00019026-exon-sc0000317-1510915933:364081..364100 | TCONS_00019026-exon-sc0000317-1510915933:364081..364100 | Clytia hemisphaerica | exon |
| TCONS_00019026-exon-sc0000317-1575043694:364081..364100 | TCONS_00019026-exon-sc0000317-1575043694:364081..364100 | Clytia hemisphaerica | exon |
| TCONS_00019026-exon-sc0000317-1491911889:372260..372431 | TCONS_00019026-exon-sc0000317-1491911889:372260..372431 | Clytia hemisphaerica | exon |
| TCONS_00019026-exon-sc0000317-1510915933:372260..372431 | TCONS_00019026-exon-sc0000317-1510915933:372260..372431 | Clytia hemisphaerica | exon |
| TCONS_00019026-exon-sc0000317-1575043694:372260..372431 | TCONS_00019026-exon-sc0000317-1575043694:372260..372431 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000317 | supercontig | sc0000317:364081..372431 + |
Blast
The following BLAST results are available for this feature:
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