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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019052 ID=TCONS_00019052|Name=TCONS_00019052|organism=Clytia hemisphaerica|type=transcript|length=2676bpRun BLAST on NCBI transcript from alignment at sc0000317:237145..256727- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019052 ID=TCONS_00019052|Name=TCONS_00019052|organism=Clytia hemisphaerica|type=transcript|length=19583bp|location=Sequence derived from alignment at sc0000317:237145..256727- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019052 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 2.117e-34 Identity = 83/246 (33.74%), Postives = 116/246 (47.15%), Query Frame = 3
Query: 1836 SIGCDMPDV-DNGKVS-GETHYGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTN 2567
SI CD+P +NG + ET G V Y+C + L D + CL KWS +P C+ C P V NG K + Y + + Y CD GY V +G + R CQ++ W + P C C P NG GD++T + + C+EGFLLEG S C NG W+ P C +RC P NG+ EG++ Y + +V C G+ G TC+ G WD ++ +C N
Sbjct: 2714 SIECDLPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDLRLCLENRKWSGASPRCEAISCKKPNPVMNGSIK-----GSNYTYLSTLYYECDPGY-VLNGTERRTCQDDKNWDEDEPICIPVDCSSPPVSANGQVRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDCVPVRCATPPQLANGVTEGLD-----YGFMKEVTFHCHEGYILHGAPKLTCQSDGNWDAEIPLCKPVN 2948 HSP 2 Score: 137.502 bits (345), Expect = 1.138e-32 Identity = 79/227 (34.80%), Postives = 108/227 (47.58%), Query Frame = 3
Query: 1878 SGETHYGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCV 2558
S H+G V Y+C + L C G WS P P C P C P + NG +I Y+ + Y C G+E+ G+ T +C ENG W G PTCK C P + NG D G +V++ C+ GF LEG S++TC G W+ AP+C I C P P +NG +EG + Y YG+ + CF GF G+ TC+ G W + C+
Sbjct: 2395 SSALHFGSTVKYSCVGGFFLRGNSTTLCQPDGTWSSPLPECVPVECPQPEEIPNG---IIDVQGLAYLSTAL--YTCKPGFELV-GNTTTLCGENGHWLGGKPTCKAIECLKPKEILNGKFSYTDLHYGQTVTYSCNRGFRLEGPSALTCLETGDWDVDAPSCNAIHCDSPQPIENGFVEGAD-----YSYGAIIIYSCFPGFQVAGHAMQTCEESG-WSSSIPTCM 2609 HSP 3 Score: 122.094 bits (305), Expect = 6.821e-28 Identity = 91/333 (27.33%), Postives = 143/333 (42.94%), Query Frame = 3
Query: 1779 TLRFTSDKSYRMKGFNATY---------------SIGCDMPD-VDNGKVSGETH-YGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFP--------------------------------------GLVANGGFKVIPSNATV---YVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTNECAAKPSPCKGE 2603
T+ ++ ++ +R++G +A +I CD P ++NG V G + YG ++ Y+C + + QTC G WS P C P C P G VA S AT ++ T++ Y C+ GYE+ G+ +CQE+GTW+G P+C C+ P P NG + ++GS+V + C G +L G C N KW+ +P C I C P+P NG ++G N Y Y S + +C G+ +G E TC+ WD D +C+ +C++ P G+
Sbjct: 2519 TVTYSCNRGFRLEGPSALTCLETGDWDVDAPSCNAIHCDSPQPIENGFVEGADYSYGAIIIYSCFPGFQVAGHAMQTCEESG-WSSSIPTCMPIDCGLPPHIDFGDCTKLKDDQGYFEQEDDMMEVPYVTPHPPYHLGAVAKTWENTKESPATHSSNFLYGTMVSYTCNPGYELL-GNPVLICQEDGTWNGSAPSCISIECDLPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDLRLCLENRKWSGASPRCEAISCKKPNPVMNGSIKGSN-----YTYLSTLYYECDPGYVLNGTERRTCQDDKNWDEDEPICIPV-DCSSPPVSANGQ 2843 HSP 4 Score: 119.783 bits (299), Expect = 2.959e-27 Identity = 78/251 (31.08%), Postives = 112/251 (44.62%), Query Frame = 3
Query: 1839 IGCDMPDVD-NGKVSGETH-YGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTNECAAKP 2585
+ C P V NG+V G+ + + + YTC++ + L + CL G WS TP C P C P +ANG + Y + ++C GY + G CQ +G W E P CK C P +G G F G + ++C G+ L G SS C NG W+ +P+C RC+ P ++E VN T + G ++QCF GF G TC+ G W C T+ C + P
Sbjct: 2831 VDCSSPPVSANGQVRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDCVPVRCATPPQLANGV-----TEGLDYGFMKEVTFHCHEGY-ILHGAPKLTCQSDGNWDAEIPLCKPVNCGPPEDLAHGFPNGFSFIHGGHIQYQCFPGYKLHGNSSRRCLSNGSWSGSSPSCLPCRCSTP------VIEYGTVNGTDFDCGKAARIQCFKGFKLLGLSEITCEADGQWSSGFPHCEHTS-CGSLP 3068 HSP 5 Score: 118.627 bits (296), Expect = 7.688e-27 Identity = 107/387 (27.65%), Postives = 157/387 (40.57%), Query Frame = 3
Query: 1716 SLTKDQDKTGMFTSVIEMNDLTLRFTSDKSYRMKGFN---ATYSIGC------DMPDVDNGKVSGETH-YGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISL-CEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQA-PTCTEIRCTPPSPP-----------------------QNGMLEG---------------------------------VNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTNECAAKPSPCKGEGDITCINSFGSFQCICEEGYQKI 2672
S++K + G S M L TS K M+G + SI C + P + NG SG + +G +V Y+C+K + + K TC G+WS P P C P C P V NG + + T + ++ ++Y C+ GY+ G VCQ N W E P + L C P NG G++F VGS V F C+EG+ L G SS TC +GKWN ++ P C +C P PP + +L+G V + ++ +GS VK C GF GN T+ C+ G W + CV EC G D+ + + C+ G++ +
Sbjct: 2096 SVSKAKFAAGSVVSFKCMEGFVLN-TSAKIECMRGGQWNPSPMSIQCIPVRCGEPPSIMNGYASGSNYSFGAMVAYSCNKGFYIKGEKKSTCEATGQWSSPIPTCHPVSCGEPPKVENGFLE----HTTGRIFESEVRYQCNPGYKSV-GSPVFVCQANRHWHSESPLMCVPLDCGKPPPIQNGFMKGENFEVGSKVQFFCNEGYELVGDSSWTCQKSGKWNKKSNPKCMPAKC--PEPPLLENQLVLKELTTEVGVVTFSCKEGHVLQGPSVLKCLPSQQWNDSFPVCKIVLCTPPPLISFGVPIPSSALHFGSTVKYSCVGGFFLRGNSTTLCQPDGTWSSPLPECVPV-ECPQPEEIPNGIIDVQGLAYLSTALYTCKPGFELV 2473 HSP 6 Score: 118.242 bits (295), Expect = 8.663e-27 Identity = 76/261 (29.12%), Postives = 115/261 (44.06%), Query Frame = 3
Query: 1896 GGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTC-----------------------------------------KISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVC 2555
G V CD + LV Q CL G+W+QP P+C+ C P + NG +A + + + Y C+ GY + GD C +NG+W+G P+C + C+ PG P NG G+ +TVG+ V+F C EG+ L G + ITC +G+WN P C + C P+ P+NG +E + ++ +GSKV +C G+ G++ S+C W VC
Sbjct: 1651 GSKVNLFCDPGFQLVGNPVQYCLNQGQWTQPLPHCERISCGVPPPLENGFH-----SADDFYAGSTVTYQCNNGYYLL-GDSRMFCTDNGSWNGVSPSCLDVDECAVGSDCSEHASCLNVDGSYICSCVPPYTGDGKNCAEPIKCKAPGNPENGHSSGEIYTVGAEVTFSCQEGYQLMGVTKITCLESGEWNHLIPYCKAVSCGKPAIPENGCIEEL-----AFTFGSKVTYRCNKGYTLAGDKESSCLANSSWSHSPPVC 1900 HSP 7 Score: 117.472 bits (293), Expect = 1.743e-26 Identity = 76/253 (30.04%), Postives = 113/253 (44.66%), Query Frame = 3
Query: 1806 YRMKGFNATYSIGCDMP-DVDNGKVSGETH-YGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCV 2558
Y G N I C P + +NG SGE + G VT++C + Y L+ K TCL G+W+ PYCK C P + NG + + + + + Y C+ GY + GD+ C N +WS P C+ C P NG I T S+ S+ CD G+ L+G S I C +G W+ P C + C P ++ ++ G N + + + V C G+ G +T C G W C+
Sbjct: 1776 YTGDGKNCAEPIKCKAPGNPENGHSSGEIYTVGAEVTFSCQEGYQLMGVTKITCLESGEWNHLIPYCKAVSCGKPAIPENGCIEEL-----AFTFGSKVTYRCNKGYTLA-GDKESSCLANSSWSHSPPVCEPVKCSSPENINNGKYILSGLTYLSTASYSCDTGYSLQGPSIIECTASGIWDRAPPACHLVFCGEPPAIKDAVITGNN-----FTFRNTVTYTCKEGYTLAGLDTIECLADGKWSRSDQQCL 2017 HSP 8 Score: 110.538 bits (275), Expect = 2.143e-24 Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 3
Query: 1851 MPDVDNGKVSGETHYG-GVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNA--QAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTN 2567
+P + N +S + + V+TY+C Y + C G WSQP P C+P C P VAN V A Y ++ ++ C GY + T CQ++G W E +C C P T+ GDDF+V VS C EG+ EG + C ++G W +C+ + C P P++G + G + Y + S + QC G+ +GN C+ W VA+C +T
Sbjct: 3067 LPMIPNAFISETSSWKENVITYSCRSGYVIQGSSDLICTEKGVWSQPYPVCEPLSCGSPPSVANA---VATGEAHTY--ESEVKLRCLEGYTMDTDTDTFTCQKDGRWFPERISCSPKKCPLPENITHILVHGDDFSVNRQVSVSCAEGYTFEGVNISVCQLDGTWEPPFSDESCSPVSCGKPESPEHGFVVG-----SKYTFESTIIYQCEPGYELEGNRERVCQENRQWSGGVAICKETR 3298 HSP 9 Score: 105.145 bits (261), Expect = 1.072e-22 Identity = 73/235 (31.06%), Postives = 104/235 (44.26%), Query Frame = 3
Query: 1839 IGCDMPDV-DNGKVSGETH-YGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQPTPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDP-GKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMW 2534
+ C P+ ++G V G + + + Y C+ Y L ++ C +WS CK C P NG + VV Y C+ GY + +G C ENGTWS P CK + C P P N +F V +VS KC EGFLL+G ITC + W + C +I C PP+ +N + GV+ Y YG + C++G+ +G S C G W
Sbjct: 3239 VSCGKPESPEHGFVVGSKYTFESTIIYQCEPGYELEGNRERVCQENRQWSGGVAICKETRCETPLEFLNGKADIENRTTGPNVV-----YSCNRGYSL-EGPSEAHCTENGTWSHPVPLCKPNPCPVPFVIPENALLSEKEFYVDQNVSIKCREGFLLQGHGIITCNPDETWTQTSAKCEKISCGPPAHVENAIARGVH-----YQYGDMITYSCYSGYMLEGFLRSVCLENGTW 3462 HSP 10 Score: 98.5969 bits (244), Expect = 1.109e-20 Identity = 76/333 (22.82%), Postives = 133/333 (39.94%), Query Frame = 3
Query: 1755 SVIEMNDLTLR----FTSDKSYRMKGFNAT---------------YSIGCDMPDVDNGKVSGETH--YGGVVTYTCDKFYTLVNGDKQTCLFGGKWSQP----TPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTW--SGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPPSPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVCVDTNECAAKPSPCKGEGDITCINSFGSFQCICEEGYQKI 2672
+VI N+ T R +T + Y + G + ++ CD P + + H +G + Y C Y+L + + C GKW P P C FC P V+ + + + + +++ + C G+ + + C G W S C C +P NG G +++ G+ V++ C++GF ++G+ TC G+W++ PTC + C P +NG LE + T + S+V+ QC G+ + G+ C+ W + + +C P G Q C EGY+ +
Sbjct: 1972 AVITGNNFTFRNTVTYTCKEGYTLAGLDTIECLADGKWSRSDQQCLAVSCDEPPIVDHASPETAHRLFGDIAFYYCSDGYSLADNSQLLCNAQGKWVPPEGQDMPRCIAHFCEKPPSVSYSILESV--SKAKFAAGSVVSFKCMEGFVLNTSAKIE-CMRGGQWNPSPMSIQCIPVRCGEPPSIMNGYASGSNYSFGAMVAYSCNKGFYIKGEKKSTCEATGQWSSPIPTCHPVSCGEPPKVENGFLE----HTTGRIFESEVRYQCNPGYKSVGSPVFVCQANRHWHSESPLMCVPLDCGKPPPIQNGFMKGENFEVGSKVQFFCNEGYELV 2297 HSP 11 Score: 95.9005 bits (237), Expect = 6.485e-20 Identity = 69/220 (31.36%), Postives = 98/220 (44.55%), Query Frame = 3
Query: 1905 VTYTCDKFYTLVNGDKQTCLFGGKWSQP--TPYCKPAFCMFPGLVANGGFKVIPSNATVYVVDTIIQYYCDAGYEVTDGDQTRVCQENGTWSGEHPTCKISLCEDPGKPTNGTRIGDDFTVGSSVSFKCDEGFLLEGQSSITCGVNGKWNAQAPTCTEIRCTPP-SPPQNGMLEGVNVNMTSYPYGSKVKVQCFTGFHADGNETSTCKGVGMWDPDVAVC 2555
V+ +C + YT + C G W P C P C P +G F V + Y ++ I Y C+ GYE+ +G++ RVCQEN WSG CK + CE P + NG ++ T G +V + C+ G+ LEG S C NG W+ P C C P P+N +L + + V ++C GF G+ TC W A C
Sbjct: 3203 VSVSCAEGYTFEGVNISVCQLDGTWEPPFSDESCSPVSCGKPESPEHG-FVV----GSKYTFESTIIYQCEPGYEL-EGNRERVCQENRQWSGGVAICKETRCETPLEFLNGKADIENRTTGPNVVYSCNRGYSLEGPSEAHCTENGTWSHPVPLCKPNPCPVPFVIPENALL-----SEKEFYVDQNVSIKCREGFLLQGHGIITCNPDETWTQTSAKC 3411 The following BLAST results are available for this feature:
BLAST of TCONS_00019052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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