|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019059 ID=TCONS_00019059|Name=TCONS_00019059|organism=Clytia hemisphaerica|type=transcript|length=1769bp
AATAAATTTAGTTGTTTTTCGTCATTACTTTTACGGACGAGGTACTGTAA
ACTATCACTGCAAAGACTAAATCTTTATGCTATAAAGGCTTTATAGACAA
AGCTAAAGAAACTAataaactaaaattatttttcaaggtTCAACCAATGG
ACTAATTCAATCAACCAATCGTCAGAAGATTGAATGGTAACCTTGAATGA
TATGAAATCATTCCATGCATTTACACGCAGAGTCTTTGATGATTGCATCG
GTATGTCAAAATTGTCAATTAATTTTTAGAAGCAGGAAAGTCGGTACAAT
GACCGAAAAATCAAACACGAAAGGCGAGCTCACCGCAACAGTTTCAGAAG
ACGACGGACGTCCGACCGTTCTTGATCATGAAGAAGAGAAGGCACTGGCT
TCATTGGTAGAGCTAACATGTGAGTAACAGGTACCCATGGACAGGACGGA
TCTAAGATACTTTGTTCAAGACTGTCTCaacaaaaagggcaaaaaaggTG
AGAAATGCATTCAAACACCGACGTACCTCCTCCGACACAGTATAGTAAGT
TTTACACAATTCTCTAAAAGGGAAATACAATAAATATCAACAAGCAACAt
gttgaatggacctacctgatataGATAGTAGGAAACATGCTGAATgagaa
tgaagatgaaaatgtttgaatatttttacaattacattgataatttttca
ttttgtactcTGTGGGGCCtctttttctcgaaaattaaatgaaatatgAA
AATGAATACCAATAAGTTTTGAAAATAGCTGCATACAAATatttagttta
aatttttttttctctaaaacttCCCGTTCATACTCTTAGAAATGCCCTAC
GTACGACGTATCGGCCACATCCAACAACCATAGGGTGTGTAAGAATGGTC
ATCACCGGTTCCTCAAGAAAAAGAAGCGACCAATTGATTATGTACCGTCG
GGAATGGCTCCAATAACGGATGTCAAGCATGATTTTATTACTATATCATT
TATTCTCCTTTTGTTCATTACTTCAAGATTTCTCGGCAAAGTAAATTTAA
AGTTTCGCGAAAATCAATTTCTCCAAAGCCAGATATTCGGTGATCCGATC
AAAGACTTGTTCGAGTCGGAATTTAAAGAGTGTAAGCGTTTTCCACTCCC
ACCTTTTTCCTGAAATCTTGGAAAAAAAACTCAATGAACACACTCAAAAT
TGGAtagacacaattaaaaatgGACACACCTTTTGTGGAAAGGTGCTGCT
AAAGGAAAAGCATCGGACCAAAAACATATGGTGGACTGCCAGAAAGATCC
TTACTTTGCAAAATCCTGTTTGTGATGAATTAACAATAGATCACGTTTCG
ATTATTGATCAATTGTTTATCTCTTTGGTCTACTTAATAATATGATTTTT
GTAGTCCTAGCttgaatgttcaattttttaaattgttacATTAATGTTTT
GACAGAGAGTTGTGAGGATGTTAGAGTTGTAgatattttatcttgctttt
ttattttttagacttaaaatGATTATAAAATTATCGAAATATATTGTCCA
AATATAGATCGTTGGTTATATTAACTagagaaaaaattcaaactgtGCTA
AATTACCAAAAAGCAAAAACTTATcatttttctagaaatttgGTCTCATG
GAATCACATTCCAACTACACGGTTCATGCGTTTGCTGTGAAAGAGAACAC
AGATCCTCGTTATAATAACATTTCACAGCGACGGAAGAGTCGAAGAGAAA
TTAGGACTGGAAAAACAGA Run BLAST on NCBI transcript from alignment at sc0000317:361425..367609- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019059 ID=TCONS_00019059|Name=TCONS_00019059|organism=Clytia hemisphaerica|type=transcript|length=6185bp|location=Sequence derived from alignment at sc0000317:361425..367609- (Clytia hemisphaerica)
AATAAATTTAGTTGTTTTTCGTCATTACTTTTACGGACGAGGTACTGTAA
ACTATCACTGCAAAGACTAAATCTTTATGCTATAAAGGCTTTATAGACAA
AGCTAAAGAAACTAATAAACTAAAATTATTTTTCAAGGTTCAACCAATGG
ACTAATTCAATCAACCAATCGTCAGAAGATTGAATGGTAACCTTGAATGA
TATGAAATCATTCCATGCATTTACACGCAGAGTCTTTGATGATTGCATCG
GTATGTCAAAATTGTCAATTAATTTTTAGAAGCAGGAAAGTCGGTACAAT
GACCGAAAAATCAAACACGAAAGGCGAGCTCACCGCAACAGTTTCAGAAG
ACGACGGACGTCCGACCGTTCTTGATCATGAAGAAGAGAAGGCACTGGCT
TCATTGGTAGAGCTAACATGTGAGTAACAGGTACCCATGGACAGGACGGA
TCTAAGATACTTTGTTCAAGACTGTCTCAACAAAAAGGGCAAAAAAGGTG
AGAAATGCATTCAAACACCGACGTACCTCCTCCGACACAGTAGTAAGTTT
TACACAATTCTCTAAAAGGGAAATACAATAAATATCAACAAGCAATAGAC
AGTAGGAAACATGCTGAATGAAGATGAAAATGTTCGAATATTTTTACAAT
TATATTGATAATTTTTCATTTNGAAGATGAAAATGTTTGAATATTTTTAC
AATTACATTGATAATTTTTCATTTTGTACTCTGTGGGGCCTCTTTTTCTC
GAAAATTAAATGAAATATGAAAATGAATACCAATAAGTTTTGAAAATAGC
TGCATACAAATATTTTGTTTAAATTTTTTTTCCTCTAAAACTTCCCTTTC
ATACTCTTAGAAATGTCCTACGTACGACGTATTGGCCACATTCAACAACC
ATAGGGTGTCTGTGTAAGAATGGTCATCACCGGTTCGTCAAGAAAAAGAA
GCGACCAATTGATTGTGTACCACCGGGAATGACCCGAATAACGTATGTTA
AGCATGATTGGCAGACAAATGTACTACTTTATTATCTATTCTCCTTTTGA
TCATTACTTCAAGATTTCTCGGTAAAGTAAATTTAAATTTTCGCGAAAAT
CCGAGATATGTTATATAGTATAGTTTAATTGTTCTACAGGACTCCATCAG
AACCAAGAGATGCACAGCATCACACTGTTTGCGAAGAAAAATAAAAACGG
TTACAACTTTACCCACTTCGCAACACCAGGCTTTGGGGAACAAAGCCAGA
TATTCGGTGATCCGATCAAAGACTTGTTCGAGTCGGAATTTAAAGATTGT
AAGCATTTTCCACTCCCACCTTTTTCCTGAAATCTTGGAGAAAAAATCCT
AACTGTGCTAAATTACCAAAAAGCAAAAACTTATCATTTTTCTAGAAATT
TGGTCTCATGGAATCACATTCCAACTACACGGTTCATGCGTTTGCTGTGA
AAGAGAACACAGATCCTCGTTATATAACATTTCACAGCCACGGAAGAGTC
GAAGAGAAATTAGGACTGGAAATATACAGAATAAACGATGAGATGAAGGC
CAACCGGGCGATGTGTCTTCCTGGTAAGTCTTCATTATTATTAGCGGTTA
AGTTGTCCTGTTTTATCTTTAGCCGAACGTTCCGATAAATCTGCTCGCTA
ACCAAATTTTGTCCGAAAAAACTTCTTTGATTGGGTAACTTTAATTTAAA
AATGCAAAGAAAATCTTTCAATTTTTACAAAATTCTATCATCGTTATCAG
GGCTGTTTGGACCTACCTGATAATAAAATTAAATTTTTTTGAGAAAATAG
TTTGGAAATTGAAATGAAAGCATATCTTGAAATTATCAACACTATTAAAC
AAGACTTATAGTAACATTCTTATCTGGATTATAATATCACTCTGTATTNG
AGCATGCATACATCGTAACTTTTTTAATCGTAGGGCGAGCTTGGTTACAA
TAGCATACTTCTCCTGTCTTTCTTTATACCTCCATGATATCAGAAACATG
TCTTATATCCTTATATCAGGTCGGTGTATTTATTGTTTTGTGTTAGATTT
CGTGCTGGAATCCCGGGGGTTTACTAATATAAATGATGGAATGTGCGGCG
AAATGACTTTTAAAATTGCACCCTTACAGTGCAACGAAAAATTGGTGAAA
TTCATTACTATACAGTGCATTTCTCTCAAATTGTCAACTCTTTTAGAGCA
AAAGAAATACACGAATTTAGAACGCAATGATGCTAAGAAATTGTCAAAAA
AGTGAAGTGTCCACATACTTTTGAGACGTTAACTTTATTACCATCTGGAA
CATCTACATGTTTAGCTTTAAAAGGTGATACAATCTCGACTTTAAGGTAC
AATAATTGATTTCAAAAGTAATTTGAAAAGAATTTTGAATTTAATGAGAA
GTTTACAATTTTTTATGTCATCATTATACAAAAATATTTCAAAATATACA
AATAATTTATTTATAAAATTTCTGAAATTATACAAAACAAATATATTGGT
ATGCATGCAGCAATAACTAAAATAATTGCAAAAACTATCTGAAAAATAAT
TCAAATCAACAAAATAAACAGAGTTTCTGGTTGCAAAATAGATCTTTGTA
TTCTTACGTGATTGGGTAACTTTAAGATATATGGTTGCGATAACCGTGTT
CAATTACTCTATTTTTCAAAATATTATACACGCTTTAATTGTTGCCTTAA
TCGAATTCTAGCAGTGAAGGAAACCATTTCTTTTGGACAATTTAGTCCGG
TGAAAGTGACGAATTTGAAATTTTGGTAGGGGAAAAGTGACCAAAATGCC
TCTAGGTGACGAAATCTTTCCCCGACGAAAAAAAAACCCGACTAAATAAA
ACTCCGACATTTTTTCCCCGATAAGGTATAATGTTTGTTAAAATAATTCA
TTTGTTATAATGTTTTATTTTTTTCACAAAAAAAGAAAAAAAAGAAAAAA
AAGAGTATCAACACAACTAACAAAGTAACTGAAAGGGAATCACTTTATAT
GAGACTTTTATACCAAGAGCCAAAACTTTTAATACCGCAGACCAGAAAAC
AATTCCCCAAGTATAACCGCGCTACAATATATCGCCATGTTAATCGCTCG
TTGGAGGTCCAAACCGACAAGCGCCATGAAAATAAAGGAAGACCGTCCAA
AGTTACCGCCCATGATAGACGTCAGATTCTCCGGAAGGTGCCCCAGCTTT
GACGAGATATTGAAACATTCACTGTAAAGTGACTACAAGTGGAGGCCGGA
GGATGTATTTGTCGCCTGATACTGTTAGAAGAGTCCTGGCTGAACAAAGC
CGGTTATAAGTATTCACAGTTGCGGAAAAAAGGCCACGGACTTGCGCAAA
TGTCTCAAGTTTGCTCGTGAGAACACGTGCAAAAGCAAAGAATTTTTAAG
AGAATAGATAGGTATGTTTATTGATGGAACATCGTTTGTTTTTAAAACAA
ATCCACATGACCAAGCCCGTGCACCCCGGGCAAGAAACTGGAGAATGCGG
TCTGAGGGCCTTGATATTGACTGCACAACCAAAGAAAGAGAGTCTGGTAT
CTGGAGGAAAGTCAGTCAATGTTGTTTATGGAATCAAGCTGTTACACCGT
TGAGTGTAACGAACTGCACTCAACATTGTTTTTAGGGAAGGAGGAATCTT
AAATTTTCTATATTTGCAAGGTGCCTCATGATATTTTGCAGAAGATTGTT
GTTCCACGCATTATCTTTCCACGATTACAATCTCATTTGTAGCAACACAA
GACAGCAGACACAAAAAATTTATCTCAATACATCAAGCCATGTCATCATG
TACTCTAAGGTGCCAAATAAACGCCCCCCCCGCTTGTTAATTTTTCGAAA
ATTTTCCAACCCCCCCGGACCTTATTAGGACCCCCCCGTTTATTAATTTT
AAAGAATATTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTCATAAGTACAATTTCCAACCC
CCCCGGCAATTAGGTCCCCCCCGTCTATTGAAATTTCGAAAATTTTCCAA
TCCCCCCGTTTATTTGGCACCTAAGAGTATTCATTTCGGAAAGGAAGAAT
AGTCGAGAATAGATGAGCAAAAAAAAAACTGTTAACCCTCTCTTAAAATA
AAATGAAACACATGATATATTAGAAGGAATAAACTTAGATGTCGATGAGG
AGATAGTTGATAAAGATGAGGAAGCTTTAGATGTTATTTAAATGATGGAG
AACATCTTGATTTTGAGGACCAGCAATTGGAAACTAACAACAATGTAGAA
AATCAGCAAAAAATGCCCCTGTCGTTGATAAAGGAACCTGATGGGATAAC
TTTTCATGACAGGATTTCTAGTTAAAATGCCAGAGGATGCAACAAATTTA
GTTTTTTCGTCATTACTTTTACGGACGAGGTACTGTAAGCTATCAATGCA
AAGACTAAATCTTTATGTTAAAAGCTTTTATAGACAAAGCTAAAGAAACT
AATATACTAAAATCATTTTTCAACGTTCAACCTGATCCAATTCAATCAAC
CAATCGTCAGAAGATTGAATGGTAACCTTGAATGGTATGAGATCATTCCA
TGCATTTACACGCAGAGTCTTTGATGATTGNGAATGGTATGAGATCATTC
CATGCATTTACACGCAGAGTCTTTGATGATTGCATCGGTATGTCAAAATT
GTCAATTAATTTTTAGAAGCAGGAAAGTCGGTACAATGACCGAAAAATCA
AACACGAAAGGCGAGCTCACCGCAACAGTTTCAGAAGACGTTGGACGTCC
GACCGGCACTGGACTGGCTTCGTTGGTAGAGCTAACATGTGAGTAACAGG
TACTCGTGAACAGGACGGATCTAAGATACTTTGTTCAAGACTATCTCAAC
AAAAAGGGCAAAAAAGTGAGAAATACATTCAAACACCGACGTACCTCCTC
CGACACAGTAGTAAGTTTTACACAATTCTCTAAAAGGGAAATACAATAAA
TATCAACAAGCAACATGTTGAATGGACCTACCTGATATAGATAGTAGGAA
ACATGCTGAATGAGAATGAAGATGAAAATGTTTGAATATTTTTACAATTA
CATTGATAATTTTTCATTTTGTACTCTGTGGGGCCTCTTTTTCTCGAAAA
TTAAATGAAATATGAAAATGAATACCAATAAGTTTTGAAAATAGCTGCAT
ACAAATATTTAGTTTAAATTTTTTTTTCTCTAAAACTTCCCGTTCATACT
CTTAGAAATGCCCTACGTACGACGTATCGGCCACATCCAACAACCATAGG
GTGTGTAAGAATGGTCATCACCGGTTCCTCAAGAAAAAGAAGCGACCAAT
TGATTATGTACCGTCGGGAATGGCTCCAATAACGGATGTCAAGCATGATT
TTATTACTATATCATTTATTCTCCTTTTGTTCATTACTTCAAGATTTCTC
GGCAAAGTAAATTTAAAGTTTCGCGAAAATCAATTTCTCCAAAGCCAGAT
ATTCGGTGATCCGATCAAAGACTTGTTCGAGTCGGAATTTAAAGAGTGTA
AGCGTTTTCCACTCCCACCTTTTTCCTGAAATCTTGGAAAAAAAACTCAA
TGAACACACTCAAAATTGGATAGACACAATTAAAAATGGACACACCTTTT
GTGGAAAGGTGCTGCTAAAGGAAAAGCATCGGACCAAAAACATATGGTGG
ACTGCCAGAAAGATCCTTACTTTGCAAAATCCTGTTTGTGATGAATTAAC
AATAGATCACGTTTCGATTATTGATCAATTGTTTATCTCTTTGGTCTACT
TAATAATATGATTTTTGTAGTCCTAGCTTGAATGTTCAATTTTTTAAATT
GTTACATTAATGTTTTGACAGAGAGTTGTGAGGATGTTAGAGTTGTAGAT
ATTTTATCTTGCTTTTTTATTTTTTAGACTTAAAATGATTATAAAATTAT
CGAAATATATTGTCCAAATATAGATCGTTGGTTATATTAACTAGAGAAAA
AATTCAAACTGTGCTAAATTACCAAAAAGCAAAAACTTATCATTTTTCTA
GAAATTTGGTCTCATGGAATCACATTCCAACTACACGGTTCATGCGTTTG
CTGTGAAAGAGAACACAGATCCTCGTTATAATAACATTTCACAGCGACGG
AAGAGTCGAAGAGAAATTAGGACTGGAAAAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019059-exon-sc0000317-1575043694:367068..367609 | TCONS_00019059-exon-sc0000317-1575043694:367068..367609 | Clytia hemisphaerica | exon |
| TCONS_00019059-exon-sc0000317-1575043694:361425..362651 | TCONS_00019059-exon-sc0000317-1575043694:361425..362651 | Clytia hemisphaerica | exon |
| TCONS_00019059-exon-sc0000317-1510915933:367068..367609 | TCONS_00019059-exon-sc0000317-1510915933:367068..367609 | Clytia hemisphaerica | exon |
| TCONS_00019059-exon-sc0000317-1510915933:361425..362651 | TCONS_00019059-exon-sc0000317-1510915933:361425..362651 | Clytia hemisphaerica | exon |
| TCONS_00019059-exon-sc0000317-1491911889:367068..367609 | TCONS_00019059-exon-sc0000317-1491911889:367068..367609 | Clytia hemisphaerica | exon |
| TCONS_00019059-exon-sc0000317-1491911889:361425..362651 | TCONS_00019059-exon-sc0000317-1491911889:361425..362651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000317 | supercontig | sc0000317:361425..367609 - |
Blast
The following BLAST results are available for this feature:
|
