TCONS_00019060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019060
Unique NameTCONS_00019060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019060 ID=TCONS_00019060|Name=TCONS_00019060|organism=Clytia hemisphaerica|type=transcript|length=1210bp
Attgtcagtaaataatcattagtaaatcatagttttttttagccgaagag
tgcaaaaagtggtaatagtgcaattaacgattaatcgcactcctctaaac
caatcagattcgagtaattttgcacggctgacgattacattTGTTATAAT
GTTATATTCTTTTCacattagaaaaaaaaagagtatATTAACACAAGTAA
CAAAATAACTGAAAGGGAATCACTTTATATGAGACTTTTGTACCAAGAGT
CAAAACTTTCAATACCGCAGATCAGAAAACAATTTCCCCATTGTATACGC
TACAATATATCGCCATGTTAATCGCTCGTTGGAGGAACAAACCGACAAGC
GCCATGAAAATAAAGGAAGACCGTCCAAAGTTACCGCCAATGATAGACGT
CAGATTCTCCGGAAGGTGCCCCAGCTTTGACGAGATATTGGAACATTCAC
TGTAAAGCGACTACAAGTGGAAGCCGGAGTTATGCATTTGTCGCATGATA
CTGTTAGAAGAGTCCTAAACAAAGCCGGTTATAAGTATTTACAGTCGCGG
GAAAAAGGCTTGATAAGAGCCACGGACTTGCACAAACGTCTCAAGTTTGC
TCGTGAAAACATACGCAAAAGCAAAGAATTTTTAAGAGAATAGATAGGTA
TGTTTATTGATGGAACAtcgtttgtttttaaaacaaatcCACATGACCAA
GCCCGTGCATCCGGGGCAAGAAACTGGAGAATGCGGTCTGAGGGCTTTGA
TATTGACTGCACAACCAAAGGAAGAGAGTCTGGTAACGGAGGAAAGTCAG
TCAATGTTGTTTATGGAATCAAGCTGTTACTGCACTCAACATTGTTTTTA
GGGAAGGAGGAATCTTAAATTTGCTATATTTGCAAGGTGTCTCATGATAT
TTTGCTAAGATTGTTGTTCTACGCATCATCTTTCCACGATTACACCCTCA
TTTGTAACAACACAAGACAGCAGACACAAAAAATTTATCTCAATACATCA
AGCCATGTCATCATGTATTCATAGAAGAATAGTCGAGAATagatgagcaa
aaaaaaactgttaaccctctcttaaaataaaatgaaacacaCGATATATT
AGAAAGAATAAACTTAGATGTCGATGAGGAGATAGTTGATAAAGATGAGG
AGATAGTTGATAAACATGAGGAGATAGTTGATAAAGATGAGGAAATAGTT
GATAAAGATG
Run BLAST on NCBI

transcript from alignment at sc0000317:363392..368969-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019060 ID=TCONS_00019060|Name=TCONS_00019060|organism=Clytia hemisphaerica|type=transcript|length=5578bp|location=Sequence derived from alignment at sc0000317:363392..368969- (Clytia hemisphaerica)
ATTGTCAGTAAATAATCATTAGTAAATCATAGTTTTTTTTAGCCGAAGAG
TGCAAAAAGTGGTAATAGTGCAATTAACGATTAATCGCACTCCTCTAAAC
CAATCAGATTCGAGTAATTTTGCACGGCTGACGATTACATTTGTTATAAT
GTTATATTCTTTTCACATTAGAAAAAAAAAGAGTATATTAACACAAGTAA
CAAAATAACTGAAAGGGAATCACTTTATATGAGACTTTTGTACCAAGAGT
CAAAACTTTCAATACCGCAGATCAGAAAACAATTTCCCCATTGTATACGC
TACAATATATCGCCATGTTAATCGCTCGTTGGAGGAACAAACCGACAAGC
GCCATGAAAATAAAGGAAGACCGTCCAAAGTTACCGCCAATGATAGACGT
CAGATTCTCCGGAAGGTGCCCCAGCTTTGACGAGATATTGGAACATTCAC
TGTAAAGCGACTACAAGTGGAAGCCGGAGTTATGCATTTGTCGCATGATA
CTGTTAGAAGAGTCCTAAACAAAGCCGGTTATAAGTATTTACAGTCGCGG
GAAAAAGGCTTGATAAGAGCCACGGACTTGCACAAACGTCTCAAGTTTGC
TCGTGAAAACATACGCAAAAGCAAAGAATTTTTAAGAGAATAGATAGGTA
TGTTTATTGATGGAACATCGTTTGTTTTTAAAACAAATCCACATGACCAA
GCCCGTGCATCCGGGGCAAGAAACTGGAGAATGCGGTCTGAGGGCTTTGA
TATTGACTGCACAACCAAAGGAAGAGAGTCTGGTAACGGAGGAAAGTCAG
TCAATGTTGTTTATGGAATCAAGCTGTTACTGCACTCAACATTGTTTTTA
GGGAAGGAGGAATCTTAAATTTGCTATATTTGCAAGGTGTCTCATGATAT
TTTGCTAAGATTGTTGTTCTACGCATCATCTTTCCACGATTACACCCTCA
TTTGTAACAACACAAGACAGCAGACACAAAAAATTTATCTCAATACATCA
AGCCATGTCATCATGTATTCATAGAAGAATAGTCGAGAATAGATGAGCAA
AAAAAAACTGTTAACCCTCTCTTAAAATAAAATGAAACACACGATATATT
AGAAAGAATAAACTTAGATGTCGATGAGGAGATAGTTGATAAAGATGAGG
AGATAGTTGATAAACATGAGGAGATAGTTGATAAAGATGAGGAAGCTTTA
GATGTTTATAAATGATGGAGAACATCTTGATTTTGAGGACCAGCAATTAG
AAAATAACAACAATGTAGAAAATCAGCAAAACATGCCCCTGCCGTTGATA
AAGGAACCTGATGGGATAACTTTTCATGACAGGATTTCTAGTTAAAATGC
CAGAGGATGCAATAAATTTAGTTGTTTTTCGTCATTACTTTTACGGACGA
GGTACTGTAAACTATCACTGCAAAGACTAAATCTTTATGCTATAAAGGCT
TTATAGACAAAGCTAAAGAAACTAATAAACTAAAATTATTTTTCAAGGTT
CAACCAATGGACTAATTCAATCAACCAATCGTCAGAAGATTGAATGGTAA
CCTTGAATGATATGAAATCATTCCATGCATTTACACGCAGAGTCTTTGAT
GATTGCATCGGTATGTCAAAATTGTCAATTAATTTTTAGAAGCAGGAAAG
TCGGTACAATGACCGAAAAATCAAACACGAAAGGCGAGCTCACCGCAACA
GTTTCAGAAGACGACGGACGTCCGACCGTTCTTGATCATGAAGAAGAGAA
GGCACTGGCTTCATTGGTAGAGCTAACATGTGAGTAACAGGTACCCATGG
ACAGGACGGATCTAAGATACTTTGTTCAAGACTGTCTCAACAAAAAGGGC
AAAAAAGGTGAGAAATGCATTCAAACACCGACGTACCTCCTCCGACACAG
TAGTAAGTTTTACACAATTCTCTAAAAGGGAAATACAATAAATATCAACA
AGCAATAGACAGTAGGAAACATGCTGAATGAAGATGAAAATGTTCGAATA
TTTTTACAATTATATTGATAATTTTTCATTTNGAAGATGAAAATGTTTGA
ATATTTTTACAATTACATTGATAATTTTTCATTTTGTACTCTGTGGGGCC
TCTTTTTCTCGAAAATTAAATGAAATATGAAAATGAATACCAATAAGTTT
TGAAAATAGCTGCATACAAATATTTTGTTTAAATTTTTTTTCCTCTAAAA
CTTCCCTTTCATACTCTTAGAAATGTCCTACGTACGACGTATTGGCCACA
TTCAACAACCATAGGGTGTCTGTGTAAGAATGGTCATCACCGGTTCGTCA
AGAAAAAGAAGCGACCAATTGATTGTGTACCACCGGGAATGACCCGAATA
ACGTATGTTAAGCATGATTGGCAGACAAATGTACTACTTTATTATCTATT
CTCCTTTTGATCATTACTTCAAGATTTCTCGGTAAAGTAAATTTAAATTT
TCGCGAAAATCCGAGATATGTTATATAGTATAGTTTAATTGTTCTACAGG
ACTCCATCAGAACCAAGAGATGCACAGCATCACACTGTTTGCGAAGAAAA
ATAAAAACGGTTACAACTTTACCCACTTCGCAACACCAGGCTTTGGGGAA
CAAAGCCAGATATTCGGTGATCCGATCAAAGACTTGTTCGAGTCGGAATT
TAAAGATTGTAAGCATTTTCCACTCCCACCTTTTTCCTGAAATCTTGGAG
AAAAAATCCTAACTGTGCTAAATTACCAAAAAGCAAAAACTTATCATTTT
TCTAGAAATTTGGTCTCATGGAATCACATTCCAACTACACGGTTCATGCG
TTTGCTGTGAAAGAGAACACAGATCCTCGTTATATAACATTTCACAGCCA
CGGAAGAGTCGAAGAGAAATTAGGACTGGAAATATACAGAATAAACGATG
AGATGAAGGCCAACCGGGCGATGTGTCTTCCTGGTAAGTCTTCATTATTA
TTAGCGGTTAAGTTGTCCTGTTTTATCTTTAGCCGAACGTTCCGATAAAT
CTGCTCGCTAACCAAATTTTGTCCGAAAAAACTTCTTTGATTGGGTAACT
TTAATTTAAAAATGCAAAGAAAATCTTTCAATTTTTACAAAATTCTATCA
TCGTTATCAGGGCTGTTTGGACCTACCTGATAATAAAATTAAATTTTTTT
GAGAAAATAGTTTGGAAATTGAAATGAAAGCATATCTTGAAATTATCAAC
ACTATTAAACAAGACTTATAGTAACATTCTTATCTGGATTATAATATCAC
TCTGTATTNGAGCATGCATACATCGTAACTTTTTTAATCGTAGGGCGAGC
TTGGTTACAATAGCATACTTCTCCTGTCTTTCTTTATACCTCCATGATAT
CAGAAACATGTCTTATATCCTTATATCAGGTCGGTGTATTTATTGTTTTG
TGTTAGATTTCGTGCTGGAATCCCGGGGGTTTACTAATATAAATGATGGA
ATGTGCGGCGAAATGACTTTTAAAATTGCACCCTTACAGTGCAACGAAAA
ATTGGTGAAATTCATTACTATACAGTGCATTTCTCTCAAATTGTCAACTC
TTTTAGAGCAAAAGAAATACACGAATTTAGAACGCAATGATGCTAAGAAA
TTGTCAAAAAAGTGAAGTGTCCACATACTTTTGAGACGTTAACTTTATTA
CCATCTGGAACATCTACATGTTTAGCTTTAAAAGGTGATACAATCTCGAC
TTTAAGGTACAATAATTGATTTCAAAAGTAATTTGAAAAGAATTTTGAAT
TTAATGAGAAGTTTACAATTTTTTATGTCATCATTATACAAAAATATTTC
AAAATATACAAATAATTTATTTATAAAATTTCTGAAATTATACAAAACAA
ATATATTGGTATGCATGCAGCAATAACTAAAATAATTGCAAAAACTATCT
GAAAAATAATTCAAATCAACAAAATAAACAGAGTTTCTGGTTGCAAAATA
GATCTTTGTATTCTTACGTGATTGGGTAACTTTAAGATATATGGTTGCGA
TAACCGTGTTCAATTACTCTATTTTTCAAAATATTATACACGCTTTAATT
GTTGCCTTAATCGAATTCTAGCAGTGAAGGAAACCATTTCTTTTGGACAA
TTTAGTCCGGTGAAAGTGACGAATTTGAAATTTTGGTAGGGGAAAAGTGA
CCAAAATGCCTCTAGGTGACGAAATCTTTCCCCGACGAAAAAAAAACCCG
ACTAAATAAAACTCCGACATTTTTTCCCCGATAAGGTATAATGTTTGTTA
AAATAATTCATTTGTTATAATGTTTTATTTTTTTCACAAAAAAAGAAAAA
AAAGAAAAAAAAGAGTATCAACACAACTAACAAAGTAACTGAAAGGGAAT
CACTTTATATGAGACTTTTATACCAAGAGCCAAAACTTTTAATACCGCAG
ACCAGAAAACAATTCCCCAAGTATAACCGCGCTACAATATATCGCCATGT
TAATCGCTCGTTGGAGGTCCAAACCGACAAGCGCCATGAAAATAAAGGAA
GACCGTCCAAAGTTACCGCCCATGATAGACGTCAGATTCTCCGGAAGGTG
CCCCAGCTTTGACGAGATATTGAAACATTCACTGTAAAGTGACTACAAGT
GGAGGCCGGAGGATGTATTTGTCGCCTGATACTGTTAGAAGAGTCCTGGC
TGAACAAAGCCGGTTATAAGTATTCACAGTTGCGGAAAAAAGGCCACGGA
CTTGCGCAAATGTCTCAAGTTTGCTCGTGAGAACACGTGCAAAAGCAAAG
AATTTTTAAGAGAATAGATAGGTATGTTTATTGATGGAACATCGTTTGTT
TTTAAAACAAATCCACATGACCAAGCCCGTGCACCCCGGGCAAGAAACTG
GAGAATGCGGTCTGAGGGCCTTGATATTGACTGCACAACCAAAGAAAGAG
AGTCTGGTATCTGGAGGAAAGTCAGTCAATGTTGTTTATGGAATCAAGCT
GTTACACCGTTGAGTGTAACGAACTGCACTCAACATTGTTTTTAGGGAAG
GAGGAATCTTAAATTTTCTATATTTGCAAGGTGCCTCATGATATTTTGCA
GAAGATTGTTGTTCCACGCATTATCTTTCCACGATTACAATCTCATTTGT
AGCAACACAAGACAGCAGACACAAAAAATTTATCTCAATACATCAAGCCA
TGTCATCATGTACTCTAAGGTGCCAAATAAACGCCCCCCCCGCTTGTTAA
TTTTTCGAAAATTTTCCAACCCCCCCGGACCTTATTAGGACCCCCCCGTT
TATTAATTTTAAAGAATATTTTCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCATAAGTACAA
TTTCCAACCCCCCCGGCAATTAGGTCCCCCCCGTCTATTGAAATTTCGAA
AATTTTCCAATCCCCCCGTTTATTTGGCACCTAAGAGTATTCATTTCGGA
AAGGAAGAATAGTCGAGAATAGATGAGCAAAAAAAAAACTGTTAACCCTC
TCTTAAAATAAAATGAAACACATGATATATTAGAAGGAATAAACTTAGAT
GTCGATGAGGAGATAGTTGATAAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010677XLOC_010677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019060-exon-sc0000317-1575043694:367776..368969TCONS_00019060-exon-sc0000317-1575043694:367776..368969Clytia hemisphaericaexon
TCONS_00019060-exon-sc0000317-1575043694:363392..363407TCONS_00019060-exon-sc0000317-1575043694:363392..363407Clytia hemisphaericaexon
TCONS_00019060-exon-sc0000317-1510915933:367776..368969TCONS_00019060-exon-sc0000317-1510915933:367776..368969Clytia hemisphaericaexon
TCONS_00019060-exon-sc0000317-1510915933:363392..363407TCONS_00019060-exon-sc0000317-1510915933:363392..363407Clytia hemisphaericaexon
TCONS_00019060-exon-sc0000317-1491911889:367776..368969TCONS_00019060-exon-sc0000317-1491911889:367776..368969Clytia hemisphaericaexon
TCONS_00019060-exon-sc0000317-1491911889:363392..363407TCONS_00019060-exon-sc0000317-1491911889:363392..363407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:363392..368969 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.562024	0.262003	0.159088	0	1.02321	0.374324	0.573887	0.67627	0.652543	0.399724	0.566945	0.140614	0.280338	0.276322	0.438761	0.251471	0.835098	0.609422	0.0746804	0.156295	0.339623	0.795149	0.625763	0.224085	0.377137	0.768161	0.195504	0.404237	1.48153	0.513431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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