|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019064 ID=TCONS_00019064|Name=TCONS_00019064|organism=Clytia hemisphaerica|type=transcript|length=851bp
AATGTCTCCGTACAAACGTATTTAAAGGAGCTCCGTTTTCTCCAACGATT
ATCAATTTGCATTATCATTTCATGATATGATCACTACAAAGGTAACAAAA
AactattcattttcttttttcccaaCAGATCACGGCGACGCGCCAGGGTT
GAGAGAGAAACTACTGAACATTAAGGACAGAAACTTGAAACGAAAAGCTG
AAAGCCTTCCCGTATTATTAGAAGCAGCCTATGCAAAATCTACCCTAAGG
AAGTACAAGCCAGTCTGGGAGAAATGGTTGATCTGGTCCGACCCCTTTGA
CGAAGTGATTAGCTGCCCCGCCGATCCGATCTACGTCGCAATTTACATAA
ACGATCTTACCAATTCTTTCGCGACCGAAGGTGCACTAACCGCAGCAATT
TTGGGTATCCATTGGGGCCACTTGAATTCCGGATTTGATTCTCCGACCAA
TCATCCGCTCGTCAGACTAGCAATCGAAGGCGGTAAACGCATAATGACAG
AAAGGAGATCCCCCTTAAAAAATTGCCACAGAAAGGAACCCTTGTCCTCA
GATCTTATCAAAAATCTCGTACGGAAATATTCAACCTCTACTAACTTGGT
CGATATTCGCTTCCTTATCATGGTCCTTTTAGGATTCGCAGGGTTCTTTA
GAATCAGCGAGATACTGAACATCCAGTTGAAAGAAATAACATTCGATAAG
TCTGGCGCAACAGTTTATTTACCTTTTTCAAAAACAGATCAAGTACGCGA
AGGTAACATCGTTTTTATTAGTAAAACAGATACATAGTGTTGTCCAATCT
ACTGGCTTCGTAAGTATCTAGCATTGTCCGGGCTAAGACACAAGCCTGAA
G Run BLAST on NCBI protein sequence of TCONS_00019064-protein >TCONS_00019064-protein ID=TCONS_00019064-protein|Name=TCONS_00019064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MITTKVTKNYSFSFFPTDHGDAPGLREKLLNIKDRNLKRKAESLPVLLEA
AYAKSTLRKYKPVWEKWLIWSDPFDEVISCPADPIYVAIYINDLTNSFAT
EGALTAAILGIHWGHLNSGFDSPTNHPLVRLAIEGGKRIMTERRSPLKNC
HRKEPLSSDLIKNLVRKYSTSTNLVDIRFLIMVLLGFAGFFRISEILNIQ
LKEITFDKSGATVYLPFSKTDQVREGNIVFISKTDT Run BLAST on NCBI transcript from alignment at sc0000317:3905..4755 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019064 ID=TCONS_00019064|Name=TCONS_00019064|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at sc0000317:3905..4755 (Clytia hemisphaerica)
CTTCAGGCTTGTGTCTTAGCCCGGACAATGCTAGATACTTACGAAGCCAG
TAGATTGGACAACACTATGTATCTGTTTTACTAATAAAAACGATGTTACC
TTCGCGTACTTGATCTGTTTTTGAAAAAGGTAAATAAACTGTTGCGCCAG
ACTTATCGAATGTTATTTCTTTCAACTGGATGTTCAGTATCTCGCTGATT
CTAAAGAACCCTGCGAATCCTAAAAGGACCATGATAAGGAAGCGAATATC
GACCAAGTTAGTAGAGGTTGAATATTTCCGTACGAGATTTTTGATAAGAT
CTGAGGACAAGGGTTCCTTTCTGTGGCAATTTTTTAAGGGGGATCTCCTT
TCTGTCATTATGCGTTTACCGCCTTCGATTGCTAGTCTGACGAGCGGATG
ATTGGTCGGAGAATCAAATCCGGAATTCAAGTGGCCCCAATGGATACCCA
AAATTGCTGCGGTTAGTGCACCTTCGGTCGCGAAAGAATTGGTAAGATCG
TTTATGTAAATTGCGACGTAGATCGGATCGGCGGGGCAGCTAATCACTTC
GTCAAAGGGGTCGGACCAGATCAACCATTTCTCCCAGACTGGCTTGTACT
TCCTTAGGGTAGATTTTGCATAGGCTGCTTCTAATAATACGGGAAGGCTT
TCAGCTTTTCGTTTCAAGTTTCTGTCCTTAATGTTCAGTAGTTTCTCTCT
CAACCCTGGCGCGTCGCCGTGATCTGttgggaaaaaagaaaatgaatagt
TTTTTGTTACCTTTGTAGTGATCATATCATGAAATGATAATGCAAATTGA
TAATCGTTGGAGAAAACGGAGCTCCTTTAAATACGTTTGTACGGAGACAT
T Coding sequence (CDS) from alignment at sc0000317:3905..4755 >TCONS_00019064 ID=TCONS_00019064|Name=TCONS_00019064|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0000317:3905..4755 (Clytia hemisphaerica)
CTATGTATCTGTTTTACTAATAAAAACGATGTTACCTTCGCGTACTTGAT
CTGTTTTTGAAAAAGGTAAATAAACTGTTGCGCCAGACTTATCGAATGTT
ATTTCTTTCAACTGGATGTTCAGTATCTCGCTGATTCTAAAGAACCCTGC
GAATCCTAAAAGGACCATGATAAGGAAGCGAATATCGACCAAGTTAGTAG
AGGTTGAATATTTCCGTACGAGATTTTTGATAAGATCTGAGGACAAGGGT
TCCTTTCTGTGGCAATTTTTTAAGGGGGATCTCCTTTCTGTCATTATGCG
TTTACCGCCTTCGATTGCTAGTCTGACGAGCGGATGATTGGTCGGAGAAT
CAAATCCGGAATTCAAGTGGCCCCAATGGATACCCAAAATTGCTGCGGTT
AGTGCACCTTCGGTCGCGAAAGAATTGGTAAGATCGTTTATGTAAATTGC
GACGTAGATCGGATCGGCGGGGCAGCTAATCACTTCGTCAAAGGGGTCGG
ACCAGATCAACCATTTCTCCCAGACTGGCTTGTACTTCCTTAGGGTAGAT
TTTGCATAGGCTGCTTCTAATAATACGGGAAGGCTTTCAGCTTTTCGTTT
CAAGTTTCTGTCCTTAATGTTCAGTAGTTTCTCTCTCAACCCTGGCGCGT
CGCCGTGATCTGttgggaaaaaagaaaatgaatagtTTTTTGTTACCTTT
GTAGTGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019064-exon-sc0000317-1491911889:3905..4755 | TCONS_00019064-exon-sc0000317-1491911889:3905..4755 | Clytia hemisphaerica | exon |
| TCONS_00019064-exon-sc0000317-1510915933:3905..4755 | TCONS_00019064-exon-sc0000317-1510915933:3905..4755 | Clytia hemisphaerica | exon |
| TCONS_00019064-exon-sc0000317-1575043694:3905..4755 | TCONS_00019064-exon-sc0000317-1575043694:3905..4755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000317 | supercontig | sc0000317:3905..4755 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
|
