TCONS_00019076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019076
Unique NameTCONS_00019076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019076 ID=TCONS_00019076|Name=TCONS_00019076|organism=Clytia hemisphaerica|type=transcript|length=430bp
TTTTGACTGTAGGCTCGAACTGTATTTGCTTTCGATATCCTTTTCTAAGT
AGATTagagaaattatcaaaattccCCGATTTATGCATAATTTGGCTGGG
AACTTTCTATATTTTCCGGTCACCATTATGAAATATTTATGGCACATTTG
CAGTTGGTCTATATCCAAAATGgtattagtctgaatcgcagacctctaca
aaaccctaGGTAGTATAGTCTGAATGAcaaacctctacaaaaccactaGT
ATAGTCTATAAGGAGCacaaatccgttagtggatgccagcagcctaaaaT
GGTATACATTATTAACCTTTTTAGTCGTAGAGCTTGATGAGCGGGTATAC
GCGATGGTTCTGTGAAGAAATATATGTTTAGCATTATTTTTGATGCCATC
TAGGAGGGTAATATAGAATGTAGAATAGAG
Run BLAST on NCBI

transcript from alignment at sc0000317:272438..272867

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019076 ID=TCONS_00019076|Name=TCONS_00019076|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at sc0000317:272438..272867 (Clytia hemisphaerica)
CTCTATTCTACATTCTATATTACCCTCCTAGATGGCATCAAAAATAATGC
TAAACATATATTTCTTCACAGAACCATCGCGTATACCCGCTCATCAAGCT
CTACGACTAAAAAGGTTAATAATGTATACCAttttaggctgctggcatcc
actaacggatttgtGCTCCTTATAGACTATACtagtggttttgtagaggt
ttgTCATTCAGACTATACTACCtagggttttgtagaggtctgcgattcag
actaatacCATTTTGGATATAGACCAACTGCAAATGTGCCATAAATATTT
CATAATGGTGACCGGAAAATATAGAAAGTTCCCAGCCAAATTATGCATAA
ATCGGggaattttgataatttctctAATCTACTTAGAAAAGGATATCGAA
AGCAAATACAGTTCGAGCCTACAGTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010691XLOC_010691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019076-exon-sc0000317-1491911889:272438..272867TCONS_00019076-exon-sc0000317-1491911889:272438..272867Clytia hemisphaericaexon
TCONS_00019076-exon-sc0000317-1510915933:272438..272867TCONS_00019076-exon-sc0000317-1510915933:272438..272867Clytia hemisphaericaexon
TCONS_00019076-exon-sc0000317-1575043694:272438..272867TCONS_00019076-exon-sc0000317-1575043694:272438..272867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:272438..272867 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.313089	0	1.06696	0.86595	0.342143	1.44473	2.8983	0.676389	0.335127	0.650565	1.28297	0.427061	0.665261	0.546935	0.0978241	0.482045	0.24704	0	0.357146	0.776061	0.681364	0.920319	0	0.517071	0.461473	0.440245	0.23492	0.356358	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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