TCONS_00019087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019087
Unique NameTCONS_00019087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019087 ID=TCONS_00019087|Name=TCONS_00019087|organism=Clytia hemisphaerica|type=transcript|length=1364bp
tgtatttttaacgttttaaaGGAGTAAAAAATAGTCATCACGACCAGAAG
AGATTGAATAAAATATCTGGGCATCGGAAAGCGGCACAAGATACCGTCAA
GATGACGAACGGGACTTTTGTCGATCATATCATACCTCCTTCATCCTACA
TCTTCTTCAGTATGGGAATCCTCGTCGCCTTCTGTTGCATTGTGGGTAAT
TCCTTAGTCATGGTTGTTATAGTGAAATCATCACGTGATAGCAGGTGCTC
AACAAAGATGGCGTCCACGTGGATATTATTCCATTTAGCATTGTCAGCAT
TTTTCATTGGTGTTTGGACTGTAATATGCGTAGTACATATCTCAACTGAT
ACAATGAGACATAATACGAAGATGGACCATGCTCGGCGATTTTTTGGCAT
CGTGGCGCCGGGagctttgattttgatattaagTTGTATCAGTTATGATC
GGTTCATCTTGCTCAAGTATCATAAGAATCATGATAAACATATGACCAAA
AAGAAGACAAATATTTTGATTGCTTTGTGTTGGCTGCTTCCACTACCTGT
CCCATTTCTAAGATACTTGAGCCCACCTGGATTCTATTTACTCGTCATAA
TTGCAATCGTCGTCGTTTTTGTGTTGCTGATTGTCGCCTATTCCTTCGTC
TTGCTCCTGGTCTTCAATTcggagaagaaaatgaagatgatcAAAGCAAA
GAACTTATCTCTGGCAGACCTCACTTCTACTGAGTACGAACAAGAAGCTT
CTCCCCATCTTCAGAATCGACGCGACACCAAATTCAGAGACTTTGTATCT
TTAAATCGAACCATCAAATTAGCAAAAACAGTCAGTAGGCTTTTAATCAT
ATATTTGATTTTCCATTCACCACTGGTTGGATATCTACTGGTTATGTTGT
TTAAACGAGACGTCTTTGATGACCGGGGCCGTCAAACAGCCTTACTGGTG
GCGGAACTTTGCTCACAAATAAATGCTGCTTTGATACCGTTTGTTTATTT
TGCTACCAATCAATCGTGTAGGAAAGGCATCAAAGAACTTTGTGGAATCA
ATAAATGAGAAACTTTTCAAATTAAcgttgggcttttccagaaaaaaatc
gtgcaccccctgttgaggagttCCATTTctgttccaagggggtaaggttt
gaaatgcagtggaattccataagagtagacgaaaatccgtcaaaaatacc
AAGGGGGTaacgattgaaaatttgtaaaaattcggaatttcagtgaggta
tgatcctaaaattgcctggaattccaagggggtaccttaagtggattaaa
tttagcgtggattaattttcgcgactttcgcgaattttggccattttcgc
gaaatttagtcctc
Run BLAST on NCBI

protein sequence of TCONS_00019087-protein

>TCONS_00019087-protein ID=TCONS_00019087-protein|Name=TCONS_00019087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MTNGTFVDHIIPPSSYIFFSMGILVAFCCIVGNSLVMVVIVKSSRDSRCS
TKMASTWILFHLALSAFFIGVWTVICVVHISTDTMRHNTKMDHARRFFGI
VAPGALILILSCISYDRFILLKYHKNHDKHMTKKKTNILIALCWLLPLPV
PFLRYLSPPGFYLLVIIAIVVVFVLLIVAYSFVLLLVFNSEKKMKMIKAK
NLSLADLTSTEYEQEASPHLQNRRDTKFRDFVSLNRTIKLAKTVSRLLII
YLIFHSPLVGYLLVMLFKRDVFDDRGRQTALLVAELCSQINAALIPFVYF
ATNQSCRKGIKELCGINK
Run BLAST on NCBI

transcript from alignment at sc0000319:56655..58301+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019087 ID=TCONS_00019087|Name=TCONS_00019087|organism=Clytia hemisphaerica|type=transcript|length=1647bp|location=Sequence derived from alignment at sc0000319:56655..58301+ (Clytia hemisphaerica)
tgtatttttaacgttttaaaGGAGTAAAAAATAGTCATCACGACCAGAAG
AGATTGAATAAAATATCTGGGCATCGGAAAGCGGCACAAGATACCGTCAA
GATGACGAACGGGACTTTTGTCGATCATATCATACCTCCTTCATCCTACA
TCTTCTTCAGTATGGGAATCCTCGTCGCCTTCTGTTGCATTGTGGGTAAT
TCCTTAGTCATGGTTGTTATAGTGAAATCATCACGTGATAGCAGGTGCTC
AACAAAGATGGCGTCCACGTGGATATTATTCCATTTAGCATTGTCAGCAT
TTTTCATTGGTGTTTGGACTGTAATATGCGTAGTACATATCTCAACTGAT
ACAATGAGACATAATACGAAGATGGACCATGCTCGGCGATTTTTTGGCAT
CGTGGCGCCGGGagctttgattttgatattaagTTGTATCAGTTATGATC
GGTTCATCTTGCTCAAGTATCATAAGAATCATGATAAACATATGACCAAA
AAGAAGACAAATATTTTGATTGCTTTGTGTTGGCTGCTTCCACTACCTGT
CCCATTTCTAAGGTAAGTCAAAAgttaaacttgttttgtttgtgCTCCAA
GTTATCATATCCACATTGCTTCCNGTTAATCTTGTTTTGTTTATGCCCCA
AGCTATCATATCCACATTGCTCCCAAATTAAACTTGAAATACTATCTTTG
GAATGAGATGTTCTCCTAGGTGACTTTTGACAGCTTGAACTTCAGAAGGA
GTTGTTCAATCTAAACaactcgttcgttcgttcgttcgttctttttcttt
ttggagaTATTCAACTATCattaaaaatctcatttttctcGACAGATACT
TGAGCCCACCTGGATTCTATTTACTCGTCATAATTGCAATCGTCGTCGTT
TTTGTGTTGCTGATTGTCGCCTATTCCTTCGTCTTGCTCCTGGTCTTCAA
TTcggagaagaaaatgaagatgatcAAAGCAAAGAACTTATCTCTGGCAG
ACCTCACTTCTACTGAGTACGAACAAGAAGCTTCTCCCCATCTTCAGAAT
CGACGCGACACCAAATTCAGAGACTTTGTATCTTTAAATCGAACCATCAA
ATTAGCAAAAACAGTCAGTAGGCTTTTAATCATATATTTGATTTTCCATT
CACCACTGGTTGGATATCTACTGGTTATGTTGTTTAAACGAGACGTCTTT
GATGACCGGGGCCGTCAAACAGCCTTACTGGTGGCGGAACTTTGCTCACA
AATAAATGCTGCTTTGATACCGTTTGTTTATTTTGCTACCAATCAATCGT
GTAGGAAAGGCATCAAAGAACTTTGTGGAATCAATAAATGAGAAACTTTT
CAAATTAAcgttgggcttttccagaaaaaaatcgtgcaccccctgttgag
gagttCCATTTctgttccaagggggtaaggtttgaaatgcagtggaattc
cataagagtagacgaaaatccgtcaaaaataccAAGGGGGTaacgattga
aaatttgtaaaaattcggaatttcagtgaggtatgatcctaaaattgcct
ggaattccaagggggtaccttaagtggattaaatttagcgtggattaatt
ttcgcgactttcgcgaattttggccattttcgcgaaatttagtcctc

Coding sequence (CDS) from alignment at sc0000319:56655..58301+

>TCONS_00019087 ID=TCONS_00019087|Name=TCONS_00019087|organism=Clytia hemisphaerica|type=CDS|length=1914bp|location=Sequence derived from alignment at sc0000319:56655..58301+ (Clytia hemisphaerica)
ATGACGAACGGGACTTTTGTCGATCATATCATACCTCCTTCATCCTACAT
CTTCTTCAGTATGGGAATCCTCGTCGCCTTCTGTTGCATTGTGGGTAATT
CCTTAGTCATGGTTGTTATAGTGAAATCATCACGTGATAGCAGGTGCTCA
ACAAAGATGGCGTCCACGTGGATATTATTCCATTTAGCATTGTCAGCATT
TTTCATTGGTGTTTGGACTGTAATATGCGTAGTACATATCTCAACTGATA
CAATGAGACATAATACGAAGATGGACCATGCTCGGCGATTTTTTGGCATC
GTGGCGCCGGGagctttgattttgatattaagTTGTATCAGTTATGATCG
GTTCATCTTGCTCAAGTATCATAAGAATCATGATAAACATATGACCAAAA
AGAAGACAAATATTTTGATTGCTTTGTGTTGGCTGCTTCCACTACCTGTC
CCATTTCTAAGATACTTGAGCCCACCTGGATTCTATTTACTCGTCATAAT
TGCAATCGTCGTCGTTTTTGTGTTGCTGATTGTCGCCTATTCCTTCGTCT
TGCTCCTGGTCTTCAATTcggagaagaaaatgaagatgatcAAAGCAAAG
AACTTATCTCTGGCAGACCTCACTTCTACTGAGTACGAACAAGAAGCTTC
TCCCCATCTTCAGAATCGACGCGACACCAAATTCAGAGACTTTGTATCTT
TAAATCGAACCATCAAATTAGCAAAAACAGTCAGTAGGCTTTTAATCATA
TATTTGATTTTCCATTCACCACTGGTTGGATATCTACTGGTTATGTTGTT
TAAACGAGACGTCTTTGATGACCGGGGCCGTCAAACAGCCTTACTGGTGG
CGGAACTTTGCTCACAAATAAATGCTGCTTTGATACCGTTTGTTTATTTT
GCTACCAATCAATCGTGTAGGAAAGGCATCAAAGAACTTTGTGGAATCAA
TAAATGAATGACGAACGGGACTTTTGTCGATCATATCATACCTCCTTCAT
CCTACATCTTCTTCAGTATGGGAATCCTCGTCGCCTTCTGTTGCATTGTG
GGTAATTCCTTAGTCATGGTTGTTATAGTGAAATCATCACGTGATAGCAG
GTGCTCAACAAAGATGGCGTCCACGTGGATATTATTCCATTTAGCATTGT
CAGCATTTTTCATTGGTGTTTGGACTGTAATATGCGTAGTACATATCTCA
ACTGATACAATGAGACATAATACGAAGATGGACCATGCTCGGCGATTTTT
TGGCATCGTGGCGCCGGGagctttgattttgatattaagTTGTATCAGTT
ATGATCGGTTCATCTTGCTCAAGTATCATAAGAATCATGATAAACATATG
ACCAAAAAGAAGACAAATATTTTGATTGCTTTGTGTTGGCTGCTTCCACT
ACCTGTCCCATTTCTAAGATACTTGAGCCCACCTGGATTCTATTTACTCG
TCATAATTGCAATCGTCGTCGTTTTTGTGTTGCTGATTGTCGCCTATTCC
TTCGTCTTGCTCCTGGTCTTCAATTcggagaagaaaatgaagatgatcAA
AGCAAAGAACTTATCTCTGGCAGACCTCACTTCTACTGAGTACGAACAAG
AAGCTTCTCCCCATCTTCAGAATCGACGCGACACCAAATTCAGAGACTTT
GTATCTTTAAATCGAACCATCAAATTAGCAAAAACAGTCAGTAGGCTTTT
AATCATATATTTGATTTTCCATTCACCACTGGTTGGATATCTACTGGTTA
TGTTGTTTAAACGAGACGTCTTTGATGACCGGGGCCGTCAAACAGCCTTA
CTGGTGGCGGAACTTTGCTCACAAATAAATGCTGCTTTGATACCGTTTGT
TTATTTTGCTACCAATCAATCGTGTAGGAAAGGCATCAAAGAACTTTGTG
GAATCAATAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010702XLOC_010702Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019087-proteinTCONS_00019087-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019087-exon-sc0000319-1491911889:56655..57216TCONS_00019087-exon-sc0000319-1491911889:56655..57216Clytia hemisphaericaexon
TCONS_00019087-exon-sc0000319-1510915933:56655..57216TCONS_00019087-exon-sc0000319-1510915933:56655..57216Clytia hemisphaericaexon
TCONS_00019087-exon-sc0000319-1575043694:56655..57216TCONS_00019087-exon-sc0000319-1575043694:56655..57216Clytia hemisphaericaexon
TCONS_00019087-exon-sc0000319-1491911889:57500..58301TCONS_00019087-exon-sc0000319-1491911889:57500..58301Clytia hemisphaericaexon
TCONS_00019087-exon-sc0000319-1510915933:57500..58301TCONS_00019087-exon-sc0000319-1510915933:57500..58301Clytia hemisphaericaexon
TCONS_00019087-exon-sc0000319-1575043694:57500..58301TCONS_00019087-exon-sc0000319-1575043694:57500..58301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:56655..58301 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.24076	3.42521	2.10102	2.97935	1.54278	1.52401	6.71475	6.46417	2.71272	2.49416	1.8749	1.92996	3.52761	3.00702	3.61524	3.60642	1.71178	0.934808	7.94844	4.23396	0.906709	0.902054	7.98911	7.97664	1.86477	1.24143	4.09313	3.98386	3.67926	3.97641
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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