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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019095 ID=TCONS_00019095|Name=TCONS_00019095|organism=Clytia hemisphaerica|type=transcript|length=1505bpRun BLAST on NCBI protein sequence of TCONS_00019095-protein >TCONS_00019095-protein ID=TCONS_00019095-protein|Name=TCONS_00019095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp MKKEGANDVGEFSVPEVGFFEGTEKLLEVWFTSNLEDGLTNNNNNGDLRIRun BLAST on NCBI transcript from alignment at sc0000319:220398..241586+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019095 ID=TCONS_00019095|Name=TCONS_00019095|organism=Clytia hemisphaerica|type=transcript|length=21189bp|location=Sequence derived from alignment at sc0000319:220398..241586+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000319:220398..241586+ >TCONS_00019095 ID=TCONS_00019095|Name=TCONS_00019095|organism=Clytia hemisphaerica|type=CDS|length=8304bp|location=Sequence derived from alignment at sc0000319:220398..241586+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019095 vs. Swiss-Prot (Human)
Match: DCAM (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2) HSP 1 Score: 261.536 bits (667), Expect = 5.682e-82 Identity = 142/328 (43.29%), Postives = 206/328 (62.80%), Query Frame = 1
Query: 400 FFEGTEKLLEVWFTSNLEDGLTXXXXXGDLRIIPREKLDQLLGIVDAEIISVDKNEFIDSYVLSESSMFISSNRFIIKTCGITKLLFAVQPLINIVQRFTGM-KLMNFFYSRRVYLKPENQIGIHQTFNSEVEYLQKIVPDGSPYIIGSKQTEQWYLFTSD-NVSDFIESDDVTLEILMSDMDETAMVEFTKLKNESSADVIKNSGIEKILPGSINDGCLFNPIGFSLNGLNKEA-YYTIHVTPQPSCSYVSFETNIKKESYDHIVNKVLDIFKPNKFIITLFSTKGSQCGDAGEVLKKVSLNNYACADECSQQLKNYTLAYRAYCKQ 1374
FFEGTEKLLEVWF+ D N +GDLR IPR + D LL V IISV K + ++YVLSESSMF+S RFI+KTCG T LL A+ PL+ + + ++G + +FFYSR+ ++KP +Q H+ F E+E+L I P+G+ Y +G ++ WYL+T D S I D TLEILMS++D M +F ++ DV + SGI ++PGS+ D +FNP G+S+NG+ + Y+TIH+TP+P SYVSFETN+ + SYD ++ KV+++FKP KF+ TLF + S+C +K+ + D S +Y + ++ K+
Sbjct: 6 FFEGTEKLLEVWFSRQQPDA---NQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKI--EGFKRLDCQSAMFNDYNFVFTSFAKK 328 The following BLAST results are available for this feature:
BLAST of TCONS_00019095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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