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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019097 ID=TCONS_00019097|Name=TCONS_00019097|organism=Clytia hemisphaerica|type=transcript|length=1046bp
CGTCattgaaaaactttcaactatATACATCATCTGTAAGGGGAAGCCAG
TCATTATCATCAGTAGTCAAAGTTATATTCTCTCTATAATCAAACCTTGT
GTAATAATTGTGtaaatttggaacaaagcacAACAAACATTTTGACATAA
TAACTTCCTAAAGTCTTAAACAATTTACAGCCGCCTCgaacatttttcaa
tttgaaaatttaacttgaatatatttTAATCTGTGCGATTGATTTTTGAT
CGCTACAATTAAAATATGTTTGTTTATGCATTTGGGTGCTTGTAACAGCC
ATTGATTGAAGTCTTCATTACAAGCATATGTGCGTTTATGTGTCCCTTTC
CGATTCGAACACTTTTGTACTGTCTAGTGTGCATTGTTTCACTCTTTTTG
AGAATCCCCtccatttttacttttttcattgTCCCTTTCCTTTggcaaaa
attttcgaaaaaaaaaatcttaaatctcAAATCTAAGTTTTTGTTACACA
GTACTCGAACAACATTacaggccaaaatttttttttgatattttggccCC
CCGAACATGACACaagtagttaatcgatataattNNtcgataaataatcg
ataagtaatcgatggattagatatcgattaaccgatagaatcgataggta
atcagaccttcaaaaaatcttgagtatcgatcagtgatcgattatttcca
agctatcgattacttatcgatcacacatcgactacatacaacctatcgat
tacttatcaatcatgtataGATTGTTAACAATTATTGATTACTTATTGTT
tatgcattgattacttatcaattatttacttatcttcgatGACGTATCGT
TATTGATTATAATATCGATCGTGACTGACTATTGACTACATTACCAGCCC
TTTTTATGCCGGCCCTTATTCCaccaacgagcccaaaaataacgctaata
aaggtccggcgtaaaaagggccaagataaggtatttaatgaagtaaagaa
aatttctggaattcgcCAAATCTCATTCCAATCGTATTACTTTAAA Run BLAST on NCBI transcript from alignment at sc0000319:284931..287536+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019097 ID=TCONS_00019097|Name=TCONS_00019097|organism=Clytia hemisphaerica|type=transcript|length=2606bp|location=Sequence derived from alignment at sc0000319:284931..287536+ (Clytia hemisphaerica)
CGTCattgaaaaactttcaactatATACATCATCTGTAAGGGGAAGCCAG
TCATTATCATCAGTAGTCAAAGTTATATTCTCTCTATAATCAAACCTTGT
GTAATAATTGTGtaaatttggaacaaagcacAACAAACATTTTGACATAA
TAACTTCCTAAAGTCTTAAACAATTTACAGCCGCCTCgaacatttttcaa
tttgaaaatttaacttgaatatatgtgactccccaagcgatttgaagtac
acaaAAGTCCGATCGGCTAAAGCGGGTAAAAGACCGGTCTCATAGCGGGC
AAAGTGAAATTTCAAGCGGCCTAACATTTTAGAAGATCGGCCATGAAGCG
GCCAATGGAATTTTCCCAAGAATTTTCTCAAGGCCTCTATTAGAGGCTTT
TTCTTGATCGAGAGACCGGCGAAGCGGCCTATTTAGCGGCCAGCGGCCTA
CTAGCGGCctttagggatcttctcaaaaatataatcgaCTTTCGTTTATG
AAGTTCGATTAATGATTCGACTTGACTTAATTTCCTATAGTATCTCccat
attcgattatttaaaATCCTTGTAtttgattaattaatcctttttctctt
atatcttagggatcttctcaaaaatataaccgAATTTCGGTTAAATGGTT
TCGGTTAAAAACACACTGTCTCGGTTTAACCGAATCGCTTCGGTAGAAAG
TTTAACTAAATTCGGTAAAAGTAATTATTGAATTCGGCTTATGCTTGTGG
AATTCAGTTTCAGTTAAAGTTTTACCAAATTTTGGCTATAAAGAATTTTA
CATtgtctaaaataaaaatagagaaTTCACTGACTGAGAAGGGGATATTA
ACAAAAGGATCGTTCGTGGTGAGACAGGGTTATCCTAAAAAAATTGTTCC
TTTAACTACTTACAGATTCTGAATTTGTTTATCTAGTATTTTTGAATAGC
GAAATACTTTGCTCTcttacatttcttttcaaatcatgaTATTGATATAG
ATTTGGAAAGCAAGAAAAATGTCTCGAGAGACCAAAATCTTGAGGTTCAG
CCAAGCCCACCATGAACCACAACGAACGAAGGAGAGTGCAGACTTTTact
aaatgtttgtttacattgagctCTCTCTGCGTGCTTTCCTTCATgttatc
acgtgaacttttacaaaaaatagtgatgaaataCACTCCTTCTGAGTGTG
TTCTCTTTCTTTTCAcgtgattttcactttttctctctctctcgcATTCT
AAAAGTTGCATCAAACATTCGAAACGTCACAGATCAGGAGCTTGTGACAA
ATCAGGAGCTTATAAGAAAGCAAAGCCTGCGAGATGCCCTTTTGGAAGCT
TTCCCTCTCCTCTACTGGGGAAacaatcattttattttatttacaaCATT
TGATGGCTTCTTAGGTCCTTTTTATTTTGAGCGCCCTccctttatctttt
ttttttgttttgcactttttgatttctgaaaaaatctttctttgttccaa
atgtacttgaaaatgtaagtaaattgaaaaacaaagctaAGGGCCGCTAA
TGGCCGCTTAGGGCCGCTGATGGCAGCTAAGGGCCGCTAATGTCCGCTAA
GGGCTGCTGTTAGCGGCTTAAAACTTACTATGTGGCCGCTTTTAATAAGC
GGCCTCGCATCGGCCTTCTTCAATATCCGAGCGGCCCAAAAGGTAAAAAG
ACCGGTCGAGTAGAGGCCAAAGAAGATCGGTCTTTTTACCGATCGGATTT
TTATGTACTTCAGATcccttggggagtcacatatttTAATCTGTGCGATT
GATTTTTGATCGCTACAATTAAAATATGTTTGTTTATGCATTTGGGTGCT
TGTAACAGCCATTGATTGAAGTCTTCATTACAAGCATATGTGCGTTTATG
TGTCCCTTTCCGATTCGAACACTTTTGTACTGTCTAGTGTGCATTGTTTC
ACTCTTTTTGAGAATCCCCtccatttttacttttttcattgTCCCTTTCC
TTTggcaaaaattttcgaaaaaaaaaatcttaaatctcAAATCTAAGTTT
TTGTTACACAGTACTCGAACAACATTacaggccaaaatttttttttgata
ttttggccCCCCGAACATGACACaagtagttaatcgatataattNNtcga
taaataatcgataagtaatcgatggattagatatcgattaaccgatagaa
tcgataggtaatcagaccttcaaaaaatcttgagtatcgatcagtgatcg
attatttccaagctatcgattacttatcgatcacacatcgactacataca
acctatcgattacttatcaatcatgtataGATTGTTAACAATTATTGATT
ACTTATTGTTtatgcattgattacttatcaattatttacttatcttcgat
GACGTATCGTTATTGATTATAATATCGATCGTGACTGACTATTGACTACA
TTACCAGCCCTTTTTATGCCGGCCCTTATTCCaccaacgagcccaaaaat
aacgctaataaaggtccggcgtaaaaagggccaagataaggtatttaatg
aagtaaagaaaatttctggaattcgcCAAATCTCATTCCAATCGTATTAC
TTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019097-exon-sc0000319-1491911889:284931..285150 | TCONS_00019097-exon-sc0000319-1491911889:284931..285150 | Clytia hemisphaerica | exon |
| TCONS_00019097-exon-sc0000319-1510915933:284931..285150 | TCONS_00019097-exon-sc0000319-1510915933:284931..285150 | Clytia hemisphaerica | exon |
| TCONS_00019097-exon-sc0000319-1575043694:284931..285150 | TCONS_00019097-exon-sc0000319-1575043694:284931..285150 | Clytia hemisphaerica | exon |
| TCONS_00019097-exon-sc0000319-1491911889:286711..287536 | TCONS_00019097-exon-sc0000319-1491911889:286711..287536 | Clytia hemisphaerica | exon |
| TCONS_00019097-exon-sc0000319-1510915933:286711..287536 | TCONS_00019097-exon-sc0000319-1510915933:286711..287536 | Clytia hemisphaerica | exon |
| TCONS_00019097-exon-sc0000319-1575043694:286711..287536 | TCONS_00019097-exon-sc0000319-1575043694:286711..287536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:284931..287536 + |
Blast
The following BLAST results are available for this feature:
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