TCONS_00019108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019108
Unique NameTCONS_00019108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019108 ID=TCONS_00019108|Name=TCONS_00019108|organism=Clytia hemisphaerica|type=transcript|length=1862bp
TCTAGCATCATCCGTCGATGCTACAACGAGATGACATTAGTGTTCAGTCA
GTACTTGAAACTCCGTCAAAAACCTATGACTCCCGACACAGAAGACCGAA
GGCGTTCAAATACAAAGGGAGGGGCGTTACGCCCAAATGCTCCTaacata
aaaagacaacaaTCGCACCCGAAAGATTGTCATCGTTTATCGCGTGGCGC
TTGGGTGTGTATTAGGGCGGCAGGTGTCATAGCAAAGGCGCAACGCAAAT
CGGAGCTCTTAGCTGGTGAGCTATCAGTTACTTCTCTAGCCATGGAGCAA
ACAGCTTGGCAGAATCTTCCTTCTTTCGCTGTTGAAGATCTCATTGGCGT
TGAGAATGCAGATCAGCTTAAAGAAGAATCGAACTGCATTGTAAAGCTTA
ATGGAGGAAACAACGTTGAAATCACTTGGGTGCATCTTATAAAGTATCTG
ATCCATCTAAGACGACATTGCAGCTATTCGTCTCTAGCACTTGGTGATTT
CGATAAAGCCATCGTGCGAATATCTTTTCACTCGGCCGCGCGGACCATCA
AGCTGAACGTCGTAGCGAAATATTTGGCAGAACATCTGACAGTTTTCGAT
AAAGAATGCATTCCAATCTTTCCGATTGATTTGATTGGGGGTCTGGTGGC
GAGTGTGACGGCCGATATGGCGACAGTGAAGAAAAGTGCGTCGGATATTT
CACAACCTGTGTCACCAATCAAATCGCCTTCTGATGATTTTATGGANGAC
AGTGAAGAAAAGTGCGTCGGATATTTCACAACCTGTGTCACCAATCAAAT
CGCCTTCTGATGATTTTatggaagaagaagatgaagaagaagaagAAATG
GAAGACTATCCTGACCAACAATCGATTGATTCAACTGCCAATCGGATATT
AGCCAGTGAAAAAGTCGGAGATCGAGTGGACACGGTCAAAGTGCGCAACC
CTTTGCAAGCCGGTGATCTGGAGATCGCCATCCAATGGTACAAACCAGAG
CTGTCCAGTAACCTTGACAACGGATCTATTTTCTTGTTGCTAGCCATGAA
TAACAAAACAATCGCTGGGAATTCATCCTCAAACAGTTTTTCACAAGTCT
CCTCCTTATTTCACATCGTATTCCGCCTTGAAGATTGTATAGCACTTCAT
GATGAAATGGTCGATCTGATTCAGAATTCGGAAGGGGCGGATCACGCCAT
TAAAGCAGGTCAAGCTATGCGAAAGGTGACAGTAGGAGCCATAGCAACAT
CACAAGCAGTTTCTAAGATGCAATCCGCCATCTCATCAGTGCAAAAGAAG
AGCTCAAAAAGCACTCCTCCTTCGAGACAAAGCACCAAATTTGTAGATAG
TGACGAAGActtgaaatcaaagatgatacCGATAGTGCAAAACATTTCAG
AGCTTTTGAAGAGAAACACTATTTCTTCGTCACCTTCAACAGTTTCTTCT
CTCAATGTCATGGAAGAAAAGATTCCAGCCATGGAAATGTCCTGGTCAAA
CTTACTTTGTTTGGAGAGTATGTTCAACCCAAGCCTTGGTCACATTTCTC
GAGTACCTGAGACCTTCTTCGCCTGGTTCATTGAACATTTCAACCGTTTA
GCTCGCGTTTGACGAAGAGGTAATCTAACGTAAATGAATACTCATCCTTG
AAGGTCATGAATACTCAAaggtatttttaatttcttattttttgtgtGGA
AATGTGTATGctatatatttttcataatttctgtGTTGAAAGTTTTACAA
TTAATAAATTCTTGataatatattttctttataatagtttttgtgtaaat
actgtaatttaagtttgattatttaaaaaagattttagaaaTCGATCGAA
TTTTTTGTCGAT
Run BLAST on NCBI

transcript from alignment at sc0000319:60896..64826-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019108 ID=TCONS_00019108|Name=TCONS_00019108|organism=Clytia hemisphaerica|type=transcript|length=3931bp|location=Sequence derived from alignment at sc0000319:60896..64826- (Clytia hemisphaerica)
TCTAGCATCATCCGTCGATGCTACAACGAGATGACATTAGTGTTCAGTCA
GTACTTGAAACTCCGTCAAAAACCTATGACTCCCGACACAGAAGACCGAA
GGCGTTCAAATACAAAGGGAGGGGCGTTACGCCCAAATGCTCCTAACATA
AAAAGACAACAATCGCACCCGAAAGATTGTCATCGTTTATCGCGTGGCGC
TTGGGTGTGTATTAGGGCGGCAGGTGTCATAGCAAAGGCGCAACGCAAAT
CGGAGCTCTTAGCTGGTGAGCTATCAGTTACTTCTCTAGCCATGGAGCAA
ACAGCTTGGCAGAATCTTCCTTCTTTCGCTGTTGAAGATCTCATTGGCGT
TGAGAATGCAGATCAGCTTAAAGAAGAATCGAACTGCATTGTAAAGCTTA
ATGGAGGAAACAACGTTGAAATCACTTGGGTGCATCTTATAAAGTATCTG
ATCCATCTAAGACGACATTGCAGCTATTCGTCTCTAGCACTTGGTGATTT
CGATAAAGCCATCGTGCGAATATCTTTTCACTCGGCCGCGCGGACCATCA
AGCTGAACGTCGTAGCGAAATATTTGGCAGAACATCTGACAGTTTTCGAT
AAAGAATGCATTCCAATCTTTCCGATTGATTTGATTGGGGGTCTGGTGGC
GAGTGTGACGGCCGATATGGCGACAGTGAAGAAAAGTGCGTCGGATATTT
CACAACCTGTGTCACCAATCAAATCGCCTTCTGATGATTTTATGGANGAC
AGTGAAGAAAAGTGCGTCGGATATTTCACAACCTGTGTCACCAATCAAAT
CGCCTTCTGATGATTTTATGGAAGAAGAAGATGAAGAAGAAGAAGGTTGG
AGTTTTTCACTTTTGTTTCATTTTTCATGATTACGTACTATCTTTTGAAC
TAAACACGACGATCGTTATACAAAGAAAGGTCCTCCCGTGAAAACTCAAT
TGGATCAAGTGATTGAGAACAAAAATATAAATTTGAATAGTTTTTGTGTC
CTTGCCATGAGCAGGAAACGAGGAAGGTCTGGTATGAATAGTCTCTCACG
AACACGAGTAGGCCTTGTATGGCTGGAGAGAGTGTTCCATCCCGACCAAG
CTTAGGCCATTGTATTATTTTATTATTATTACACTACATGTACAGTTGAT
GCTCTCTAATTCGATCCTCAAGGGGAATCGGATTTTCGTCGAATAAGAGA
GCTTATCGAATAAGGGAACGTCGTTTATGAGAGTTTCTTGTTGATGGGGA
CTTTAAATTTCATCGAACAAGGGAGCCTATCGAATAGTAGAACGTCGAAT
TAGAGAGCGTCAACTTTATAATAAATTCCGCCGTCAATAGTATTATACAC
ACTAATAACATTTTACTCGTTCATTTTTGCCACTTTTTTTCATTGACAGA
AGAAATGGAAGACTATCCTGACCAACAATCGATTGATTCAACTGCCAATC
GGATATTAGCCAGTGAAAAAGTCGGAGATCGAGTGGACACGGTCAAAGTG
CGCAACCCTTTGCAAGCCGGTGATCTGGAGATCGCCATCCAATGGTACAA
ACCAGAGCTGTCCAGTAACCTTGACAACGGATCTATTTTCTTGTTGCTAG
CCATGAATAACAAAACAATCGCTGGGAATTCATCCTCAAACAGTTTTTCA
CAAGTCTCCTCCTTATTTCACATCGTATTCCGCCTTGAAGATTGTATAGC
ACTTCATGATGAAATGGTCGATCTGATTCAGAATTCGGAAGGGGCGGATC
ACGCCATTAAAGCAGGTTTGTTTGCACCCCCTCTATTCTGTATATGCTTT
GGGTTCATTAAAATCCATCGATTAGTTCAAAAAATTTTTTGGAACTTCAG
CTGACGCTCGCTAATTAGAACTCGAACGGGGATTCTTATTTGTTCGATAT
AGAAGATATTTTACGAGGATTTCCCTAAGACGGGAGCTGACAATTAGTTC
GAATAATAGAAGTTCAAATTAGCGAAAGTTAACTGTAAATGATCAATCAA
AATCGCACTTATGTTTTTCAGGCTTCACAAAAGTTATGTAAATTACTAAA
ATCAAGCCGCTATGAAAACAAACGTTCGAATTTGTAAAGGCGATTGCTTA
AACAAATCGAACGTTATATCCAATTATTGTTGAAGTTACATGATAAAGTC
ACACTGAAAAACCTCTATATGATTCGCTGTATGATGCGATAATTTACATC
TCTCCTCACTTCCATTTTCAGGTCAAGCTATGCGAAAGGTGACAGTAGGA
GCCATAGCAACATCACAAGCAGTTTCTAAGATGCAATCCGCCATCTCATC
AGTGCAAAAGAAGAGCTCAAAAAGCACTCCTCCTTCGAGACAAAGCACCA
AATTTGTAGATAGTGACGAAGACTTGAAATCAAAGATGATACCGATAGTG
CAAAACATTTCAGAGCTTTTGAAGAGAAACACTATTTCTTCGTCACCTTC
AACAGTTTCTTCTCTCAATGTCATGGAAGAAAAGGTTGGGAATAGTTCTT
CAATTTATATTCCCAGGAATACCTCGTCTTTTTACTGCTGTTTAACTTCT
TGCTTATTCAACATACAACCAGTGACATACCAACCTCGCCCCTGTGTAGC
ACAGGCTTTACATGTTGTTTTTTTTATAAGCATGCAAAAATCCGAAAACA
GGCTCAGAGATGCTTAGGTCAATAATAAGGCTGAAAAATGCTTGAGGGGT
GCTTAAATCTAAAGGATAAATTTAGGAAAATACTGAAAATCTGTAAAATT
CCAGCCAATAAAAGCCAAAACCAGGAAAAAAACATTTTTCGTAGGCTCAA
GTAATGCTTGCCATATGCTTAATTTTTCCCCATATCTGAGCCTAGATATG
CTTATAAGTGCAATGCTTATAAAAAAGAACATGTATTTACGTTACTGATG
AACGGCAGAGATGCCAAAGAGTATTATATGGCGCTATCAGTAAGCATCAG
AAAGCTGATAAATACGCAGAGACATACATGGGGAATTTTGAGTGCACATA
GAGAATACATTATAGAAAGTATTTCATTATCACTAAAGAAAAAAAAATTG
CGCATATAATGAAAATTCGCGAGATTTTTGCATTGTACAAGAATTAAATT
TCTCGAATACACGTCTTTTTTTTTTTAAGAAACACACTTTTAAGAAACAT
GAGGCTCAGAATGCCTTAAAACTAAGAAACATCTAAGAAACATGCTGAGG
CTGAGAATGAGAAAATAACATTTTTTAATTGGGTTTTTAATAAGAACCTT
CCAATCAAGGCTAATTATGTCAAAAAGTTTAGAAACATGTAAGAAACATT
TAAGGCTCAAAAGGCCGATTTCTTAAAAAACATTGAGGCTGCTTGGTAAA
ACTAGTTTCTTAAAAAAAAAAAAGACGTGTAGAGCTTTTTTAGGAGAGTA
CAGTATGAGAGAGAAAGATTTCGCAAATCAGCTTTTAAAGATTTTTGGTG
AAAATGACTAATGAGTTTGCATTGTGTTCTTCTTGGGTGTTATGAGAAAT
AAATGATGATTTATTGATTTATTGTATATTCTTATTTCAGATTCCAGCCA
TGGAAATGTCCTGGTCAAACTTACTTTGTTTGGAGAGTATGTTCAACCCA
AGCCTTGGTCACATTTCTCGAGTACCTGAGACCTTCTTCGCCTGGTTCAT
TGAACATTTCAACCGTTTAGCTCGCGTTTGACGAAGAGGTAATCTAACGT
AAATGAATACTCATCCTTGAAGGTCATGAATACTCAAAGGTATTTTTAAT
TTCTTATTTTTTGTGTGGAAATGTGTATGCTATATATTTTTCATAATTTC
TGTGTTGAAAGTTTTACAATTAATAAATTCTTGATAATATATTTTCTTTA
TAATAGTTTTTGTGTAAATACTGTAATTTAAGTTTGATTATTTAAAAAAG
ATTTTAGAAATCGATCGAATTTTTTGTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010715XLOC_010715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019108-exon-sc0000319-1575043694:63982..64826TCONS_00019108-exon-sc0000319-1575043694:63982..64826Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1575043694:63062..63424TCONS_00019108-exon-sc0000319-1575043694:63062..63424Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1575043694:62343..62605TCONS_00019108-exon-sc0000319-1575043694:62343..62605Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1575043694:60896..61286TCONS_00019108-exon-sc0000319-1575043694:60896..61286Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1510915933:63982..64826TCONS_00019108-exon-sc0000319-1510915933:63982..64826Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1510915933:63062..63424TCONS_00019108-exon-sc0000319-1510915933:63062..63424Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1510915933:62343..62605TCONS_00019108-exon-sc0000319-1510915933:62343..62605Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1510915933:60896..61286TCONS_00019108-exon-sc0000319-1510915933:60896..61286Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1491911889:63982..64826TCONS_00019108-exon-sc0000319-1491911889:63982..64826Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1491911889:63062..63424TCONS_00019108-exon-sc0000319-1491911889:63062..63424Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1491911889:62343..62605TCONS_00019108-exon-sc0000319-1491911889:62343..62605Clytia hemisphaericaexon
TCONS_00019108-exon-sc0000319-1491911889:60896..61286TCONS_00019108-exon-sc0000319-1491911889:60896..61286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:60896..64826 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.30675e-07	0.959921	2.05988	4.85131	5.49667	4.59482	2.03421	4.52135	0.896945	1.55632	0.951045	3.17679	0.271189	0.0181548	0	0.715345	0	0.709906	1.19811	0	0.79913	0	0.000458333	0	3.3035	9.31655	3.37375e-09	3.37633e-05	1.91442e-07	0.982586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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