TCONS_00019116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019116
Unique NameTCONS_00019116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019116 ID=TCONS_00019116|Name=TCONS_00019116|organism=Clytia hemisphaerica|type=transcript|length=1871bp
TAGAAACCAGGTCTTATAGAAAGAAGCTCGTAAATGACGTGAAACCGCAt
attaaaatacaaaggagattaCAAAGAATTTAAAAGAGAAGTGATTTTTT
ACAGCCAGCTTCACTTGCGACGTGTACCTTCAAACTCTCGCTTGTGACAA
ATATCTCGCCTATCTCGTGTATTCTTTTTTGAAACCAAATTTTCAAGATG
caaaaagcaaagaaatatgACTGGAAAGACTCCAACATGGCCCTGTTTGG
CTCTGACACTGAGAAGAAAGTCAAGAAGGAATCGGCAGAGAGTGAACCAG
CATGGCAAGGAGCTGGTGAAGACGTTGGATTGAAAATCTGGAGAATCGTC
AAATTCCAAGTCGAACATTGGGAAGATGACCAATACGGTGAATTCTACAA
CGGAGATTCTTACATTATCCTCAACACTTACAAAGAGCCTGAAGGTGATG
AACTCAAACATGACGTTCATTTCTGGATCGGAAAATATTCCACTCAAGAT
GAATACGGTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTCTTGGA
TGATAAACCAGTACAACATCGCGAAGTTCAAGGACACGAATCTTCACTCT
TCAAATCATACTTTGATTCATTGACCCTTTTGAAAGGAGGAGCAGATACT
GGCTTCAAACGCGTCTTACCAGAAGCTTATGAGCCAAGACTCTTccatgt
caaaaaagaaaatcgaaAGATCAAATGCACTCAAGTCTCATTGAAACGAG
GAAATTTGACATCTGATGACGTCTTTATCATCGATAACGGATTGAACATC
TACCAATGGAACGGATCTAAATGCAGTGCAGATGAAAAATTCAAAGCTGC
CCAAGAAGTCGACAAAATTGAAGGGAAACGCAAAGGATGTAAAACACACA
CCGTTGAAGAAAGAAGTTGTTCTGATAACCATCCTGCTGTTCAAATCCTT
GGCCCTGGAAAAAGCAAGGATAAGGCAGAGGACCCACAAGGCGAGAAAAA
GGTGTTGAAAATCAAGGATGGTGAAGATGTTGAAGAAGTATCAAGTGGTG
ATGACATTTCCAAAGATGCACTCCAATCTGATGACGtTTACATTGTGAAC
ACTGGAGATCACGTTTATTGTTGGGTCGGCAAAGGAGCCAGCGTTGACGA
ACGAAAGAATGGAATTCCATACGCTTGCAATTACTTGTCCAAAACCGAAA
CACCATGGCTTCCAGTCAGCGTGGTTGCTGAAGGAGCTGAACCCAAAGAT
GTCGCTTTCTTCAATTaaacgaaaaagaaattatCACCAATCTTCATCAT
ATAGCTTTTTACGAAATCACGAAATTTACTCCAGCGTGGAGAAAGTTCTC
AATGGGTTAATCTTTTCTCGACTTAAtcagtttaaaacattttcagtTCT
AAATTATTGACTTTTaactaattttttcattttccctcaAAAAATCTTGT
ATAATTTTTGAATACCactttatttatttgaaaatgttaatgtATCATAT
ACTCTGTccagaagaaaaataaaataaaaaagaacgaCAGTTCACTtatt
caataaaaatatttttgatacaaCTTCATTTCAGCCGAGCTAAAGATTCC
AGTGGCAAAGTCTCGCTTATTTGAAGTTATATTAATCGAACTTTTATCCA
TATTTCGAACTTGTTCAAGTCCCCTGTCAATCTTTTACTTCGAACAAATA
TCATTCCCCGTTTAATTTCGAAATcgggatttttttattttattttaaga
attACAGCTATTAGGAATTCGATGTTTTCCCAATGGGAATAAGAGACCAA
Gatgaaaattgttaaaatatggagcttacgtaccacaatcgatttatttt
gcaatctttttgatcatgtga
Run BLAST on NCBI

protein sequence of TCONS_00019116-protein

>TCONS_00019116-protein ID=TCONS_00019116-protein|Name=TCONS_00019116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MQKAKKYDWKDSNMALFGSDTEKKVKKESAESEPAWQGAGEDVGLKIWRI
VKFQVEHWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQ
DEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYFDSLTLLKGGAD
TGFKRVLPEAYEPRLFHVKKENRKIKCTQVSLKRGNLTSDDVFIIDNGLN
IYQWNGSKCSADEKFKAAQEVDKIEGKRKGCKTHTVEERSCSDNHPAVQI
LGPGKSKDKAEDPQGEKKVLKIKDGEDVEEVSSGDDISKDALQSDDVYIV
NTGDHVYCWVGKGASVDERKNGIPYACNYLSKTETPWLPVSVVAEGAEPK
DVAFFN
Run BLAST on NCBI

transcript from alignment at sc0000319:172059..175589-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019116 ID=TCONS_00019116|Name=TCONS_00019116|organism=Clytia hemisphaerica|type=transcript|length=3531bp|location=Sequence derived from alignment at sc0000319:172059..175589- (Clytia hemisphaerica)
TAGAAACCAGGTCTTATAGAAAGAAGCTCGTAAATGACGTGAAACCGCAT
ATTAAAATACAAAGGAGATTACAAAGAATTTAAAAGAGAAGTGATTTTTT
ACAGCCAGCTTCACTTGCGACGTGTACCTTCAAACTCTCGCTTGTGACAA
ATATCTCGCCTATCTCGTGTATTCTTTTTTGAAACCAAATTTTCAAGATG
CAAAAAGCAAAGAAATATGACTGGAAAGACTCCAACATGGCCCTGTTTGG
CTCTGACACTGAGAAGAAAGTAAGTTTTGTTTGTTATTCATTTTTGTTAT
GTTTTCTGCAAAAAGTGGGCGTTGTCTTGGATCAAAGTTCTCTCATGGAT
TGAAGGTTAAATTTGTAAACATTTGAGCAAAACCTTTAAATTTTCAAACT
AACACAAATCATTTGTGGCTTTTGTGAACATGTTTCGATACGTTACACAG
CTGATAAAACTCGAGTAATTCCAAAGCTTGATTCTTGAAATATATCTTAA
CCTTCCAGGTCAAGAAGGAATCGGCAGAGAGTGAACCAGCATGGCAAGGA
GCTGGTGAAGACGTTGGATTGAAAATCTGGAGAATCGTCAAATTCCAAGT
AAGATTAATTCTTTTAAATACTTATTGTTCAGATGGGTTTTAACGAAATA
AATCCTGTCTGATACTTTCTTTCAGGTCACGTACATATCCCTTATGCTGT
AAAGGATAAGGAGCTTTATTTCTCTTGAAGGCTTCCTAAGGGAAGTATGA
CACTAAAGTTATATTGTAGTGAAACTAAAAAGTCCATGCATTTACTTCAG
CTCTGACAACCCATTGGTTTGTGTGAGTGCGTAAATGGACTTTTTCGGTT
GCGTGAAAATAATATAAAAAAAAAATGCGTGAATCTGTGAATCTATGCTT
ATAAGTGAATTTTCTCTTTTTCCGCATTGTGCAAATTTCCCGACTTTCAA
ATTGCGTGAATTGAGGGTCTACTGGGGGTCCCATTATGGTTTTTGTTGCT
ATTTGAGCACCTTTAAAATCAAAATTTGTGCTTCCTATTTAGCACTTCTA
CTAGTGTCTTTCTACTTTGGCTTTTCCTTACCATCCTTTTCCCTCCCTAT
ATAGGTCGAACATTGGGAAGATGACCAATACGGTGAATTCTACAACGGAG
ATTCTTACATTATCCTCAACACTTACAAAGAGCCTGAAGGTGATGAACTC
AAACATGACGTTCATTTCTGGATCGGAAAATATTCCACTCAAGATGAATA
CGGTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTCTTGGATGATA
AACCAGTACAACATCGCGAAGTTCAAGGACACGAATCTTCACTCTTCAAA
TCATACTTTGATTGTAAGTATATGACAGAAATTTTCAAGAAAACAAGATC
CTCAATATTTCAATATTCCATAGACACAAATGTGAACTAAGAACATCTTC
ACCTGGCACAGAGCCAGGTTCATATAACGTTAAATTGACGTCAAAGAAAC
GATGCGTATTAGTTAAGCCATGGTTAAGTCTTTCAAGAAAGAGTACGTGA
AAAAAATGAAGTGGCTTAGCGCCTCAACTGGAATAATTATCCTGGTCATT
GATCTTCTTCATTCTTCACTTCAGCATTGACCCTTTTGAAAGGAGGAGCA
GATACTGGCTTCAAACGCGTCTTACCAGAAGCTTATGAGCCAAGACTCTT
CCATGTCAAAAAAGAAAATCGAAAGATCAAATGCACTCAAGTCTCATTGA
AACGAGGAAATTTGACATCTGATGACGTCTTTATCATCGATAACGGATTG
AACATCTACCAAGTAAGTTATCTCTTATTGCAACCTTTTCGTAGGAAAAA
TATTACTCCAGATTTTAATATAACTGCAATTGATGTAGTTCTTAGCATGA
AACTCGGCCAACAGGGTTGATTAGGAAATTTCTTAGGGACAATTACAAAG
GAATTAAAAATCCATCTCTGCGTTCTCTGCTTAAAACAGTGATCATTACA
ATATATCAGTTAGAACACTGTTTTCTTTTATCAACTCTTCGTAGTGGAAC
GGATCTAAATGCAGTGCAGATGAAAAATTCAAAGCTGCCCAAGAAGTCGA
CAAAATTGAAGGGAAACGCAAAGGATGTAAAACACACACCGTTGAAGAAA
GAAGTTGTTCTGATAACCATCCTGCTGTTCAAATCCTTGGCCCTGGAAAA
AGCAAGGATAAGGCAGAGGACCCACAAGGCGAGAAAAAGGTAATCTACGA
ATGCTTTATTTTCCCTACCATCCAAACGAACATTGCTCTCAACGTAAAAC
GCTTCTGAGCAATTCAAATTTAGCACCAACGCCTATTATGAGTACATCAT
CTTGGTATTCTCCAAATAGAGCTTAAACTGAGAGCTGAATCTGCGATTTT
ATGACAGTTCATGTGATTACCATATCAATTTTGCATGCAAGTCATGGTAG
CATTACCTGCTGATTGGGATTGCGATTTGTCTTCACATGTCTTTTCTATT
GCTTTTACAGGTGTTGAAAATCAAGGATGGTGAAGATGTTGAAGAAGTAT
CAAGTGGTGATGACATTTCCAAAGATGCACTCCAATCTGATGACGGTAAG
TTGAGCAGTGCATTTTGACTTTAACCTCACGTTTAGTACACTTGATGGGT
CATCTATCTGAATTTCCTAGACTTAGGTTTTCCAAAACATTTTAACATGT
TTTACTGATTTTGATTTTGTATCATTACATTTTTTCTTCATTTTAGTTTA
CATTGTGAACACTGGAGATCACGTTTATTGTTGGGTCGGCAAAGGAGCCA
GCGTTGACGAACGAAAGAATGGAATTCCATACGCTTGCAATTACTTGTCC
AAAACCGAAACACCATGGCTTCCAGTCAGCGTGGTTGCTGAAGGAGCTGA
ACCCAAAGATGTCGCTTTCTTCAATTAAACGAAAAAGAAATTATCACCAA
TCTTCATCATATAGCTTTTTACGAAATCACGAAATTTACTCCAGCGTGGA
GAAAGTTCTCAATGGGTTAATCTTTTCTCGACTTAATCAGTTTAAAACAT
TTTCAGTTCTAAATTATTGACTTTTAACTAATTTTTTCATTTTCCCTCAA
AAAATCTTGTATAATTTTTGAATACCACTTTATTTATTTGAAAATGTTAA
TGTATCATATACTCTGTCCAGAAGAAAAATAAAATAAAAAAGAACGACAG
TTCACTTATTCAATAAAAATATTTTTGATACAACTTCATTTCAGCCGAGC
TAAAGATTCCAGTGGCAAAGTCTCGCTTATTTGAAGTTATATTAATCGAA
CTTTTATCCATATTTCGAACTTGTTCAAGTCCCCTGTCAATCTTTTACTT
CGAACAAATATCATTCCCCGTTTAATTTCGAAATCGGGATTTTTTTATTT
TATTTTAAGAATTACAGCTATTAGGAATTCGATGTTTTCCCAATGGGAAT
AAGAGACCAAGATGAAAATTGTTAAAATATGGAGCTTACGTACCACAATC
GATTTATTTTGCAATCTTTTTGATCATGTGA

Coding sequence (CDS) from alignment at sc0000319:172059..175589-

>TCONS_00019116 ID=TCONS_00019116|Name=TCONS_00019116|organism=Clytia hemisphaerica|type=CDS|length=7497bp|location=Sequence derived from alignment at sc0000319:172059..175589- (Clytia hemisphaerica)
TTTACATTGTGAACACTGGAGATCACGTTTATTGTTGGGTCGGCAAAGGA
GCCAGCGTTGACGAACGAAAGAATGGAATTCCATACGCTTGCAATTACTT
GTCCAAAACCGAAACACCATGGCTTCCAGTCAGCGTGGTTGCTGAAGGAG
CTGAACCCAAAGATGTCGCTTTCTTCAATTAAGTGTTGAAAATCAAGGAT
GGTGAAGATGTTGAAGAAGTATCAAGTGGTGATGACATTTCCAAAGATGC
ACTCCAATCTGATGACGTGGAACGGATCTAAATGCAGTGCAGATGAAAAA
TTCAAAGCTGCCCAAGAAGTCGACAAAATTGAAGGGAAACGCAAAGGATG
TAAAACACACACCGTTGAAGAAAGAAGTTGTTCTGATAACCATCCTGCTG
TTCAAATCCTTGGCCCTGGAAAAAGCAAGGATAAGGCAGAGGACCCACAA
GGCGAGAAAAAGCATTGACCCTTTTGAAAGGAGGAGCAGATACTGGCTTC
AAACGCGTCTTACCAGAAGCTTATGAGCCAAGACTCTTCCATGTCAAAAA
AGAAAATCGAAAGATCAAATGCACTCAAGTCTCATTGAAACGAGGAAATT
TGACATCTGATGACGTCTTTATCATCGATAACGGATTGAACATCTACCAA
GTCGAACATTGGGAAGATGACCAATACGGTGAATTCTACAACGGAGATTC
TTACATTATCCTCAACACTTACAAAGAGCCTGAAGGTGATGAACTCAAAC
ATGACGTTCATTTCTGGATCGGAAAATATTCCACTCAAGATGAATACGGT
ACAGCAGCTTACAAAACTGTTGAATTGGACACCTTCTTGGATGATAAACC
AGTACAACATCGCGAAGTTCAAGGACACGAATCTTCACTCTTCAAATCAT
ACTTTGATTGTCAAGAAGGAATCGGCAGAGAGTGAACCAGCATGGCAAGG
AGCTGGTGAAGACGTTGGATTGAAAATCTGGAGAATCGTCAAATTCCAAA
TGCAAAAAGCAAAGAAATATGACTGGAAAGACTCCAACATGGCCCTGTTT
GGCTCTGACACTGAGAAGAAATTTACATTGTGAACACTGGAGATCACGTT
TATTGTTGGGTCGGCAAAGGAGCCAGCGTTGACGAACGAAAGAATGGAAT
TCCATACGCTTGCAATTACTTGTCCAAAACCGAAACACCATGGCTTCCAG
TCAGCGTGGTTGCTGAAGGAGCTGAACCCAAAGATGTCGCTTTCTTCAAT
TAAGTGTTGAAAATCAAGGATGGTGAAGATGTTGAAGAAGTATCAAGTGG
TGATGACATTTCCAAAGATGCACTCCAATCTGATGACGTGGAACGGATCT
AAATGCAGTGCAGATGAAAAATTCAAAGCTGCCCAAGAAGTCGACAAAAT
TGAAGGGAAACGCAAAGGATGTAAAACACACACCGTTGAAGAAAGAAGTT
GTTCTGATAACCATCCTGCTGTTCAAATCCTTGGCCCTGGAAAAAGCAAG
GATAAGGCAGAGGACCCACAAGGCGAGAAAAAGCATTGACCCTTTTGAAA
GGAGGAGCAGATACTGGCTTCAAACGCGTCTTACCAGAAGCTTATGAGCC
AAGACTCTTCCATGTCAAAAAAGAAAATCGAAAGATCAAATGCACTCAAG
TCTCATTGAAACGAGGAAATTTGACATCTGATGACGTCTTTATCATCGAT
AACGGATTGAACATCTACCAAGTCGAACATTGGGAAGATGACCAATACGG
TGAATTCTACAACGGAGATTCTTACATTATCCTCAACACTTACAAAGAGC
CTGAAGGTGATGAACTCAAACATGACGTTCATTTCTGGATCGGAAAATAT
TCCACTCAAGATGAATACGGTACAGCAGCTTACAAAACTGTTGAATTGGA
CACCTTCTTGGATGATAAACCAGTACAACATCGCGAAGTTCAAGGACACG
AATCTTCACTCTTCAAATCATACTTTGATTGTCAAGAAGGAATCGGCAGA
GAGTGAACCAGCATGGCAAGGAGCTGGTGAAGACGTTGGATTGAAAATCT
GGAGAATCGTCAAATTCCAAATGCAAAAAGCAAAGAAATATGACTGGAAA
GACTCCAACATGGCCCTGTTTGGCTCTGACACTGAGAAGAAATTTACATT
GTGAACACTGGAGATCACGTTTATTGTTGGGTCGGCAAAGGAGCCAGCGT
TGACGAACGAAAGAATGGAATTCCATACGCTTGCAATTACTTGTCCAAAA
CCGAAACACCATGGCTTCCAGTCAGCGTGGTTGCTGAAGGAGCTGAACCC
AAAGATGTCGCTTTCTTCAATTAAGTGTTGAAAATCAAGGATGGTGAAGA
TGTTGAAGAAGTATCAAGTGGTGATGACATTTCCAAAGATGCACTCCAAT
CTGATGACGTGGAACGGATCTAAATGCAGTGCAGATGAAAAATTCAAAGC
TGCCCAAGAAGTCGACAAAATTGAAGGGAAACGCAAAGGATGTAAAACAC
ACACCGTTGAAGAAAGAAGTTGTTCTGATAACCATCCTGCTGTTCAAATC
CTTGGCCCTGGAAAAAGCAAGGATAAGGCAGAGGACCCACAAGGCGAGAA
AAAGCATTGACCCTTTTGAAAGGAGGAGCAGATACTGGCTTCAAACGCGT
CTTACCAGAAGCTTATGAGCCAAGACTCTTCCATGTCAAAAAAGAAAATC
GAAAGATCAAATGCACTCAAGTCTCATTGAAACGAGGAAATTTGACATCT
GATGACGTCTTTATCATCGATAACGGATTGAACATCTACCAAGTCGAACA
TTGGGAAGATGACCAATACGGTGAATTCTACAACGGAGATTCTTACATTA
TCCTCAACACTTACAAAGAGCCTGAAGGTGATGAACTCAAACATGACGTT
CATTTCTGGATCGGAAAATATTCCACTCAAGATGAATACGGTACAGCAGC
TTACAAAACTGTTGAATTGGACACCTTCTTGGATGATAAACCAGTACAAC
ATCGCGAAGTTCAAGGACACGAATCTTCACTCTTCAAATCATACTTTGAT
TGTCAAGAAGGAATCGGCAGAGAGTGAACCAGCATGGCAAGGAGCTGGTG
AAGACGTTGGATTGAAAATCTGGAGAATCGTCAAATTCCAAATGCAAAAA
GCAAAGAAATATGACTGGAAAGACTCCAACATGGCCCTGTTTGGCTCTGA
CACTGAGAAGAAATTTACATTGTGAACACTGGAGATCACGTTTATTGTTG
GGTCGGCAAAGGAGCCAGCGTTGACGAACGAAAGAATGGAATTCCATACG
CTTGCAATTACTTGTCCAAAACCGAAACACCATGGCTTCCAGTCAGCGTG
GTTGCTGAAGGAGCTGAACCCAAAGATGTCGCTTTCTTCAATTAAGTGTT
GAAAATCAAGGATGGTGAAGATGTTGAAGAAGTATCAAGTGGTGATGACA
TTTCCAAAGATGCACTCCAATCTGATGACGTGGAACGGATCTAAATGCAG
TGCAGATGAAAAATTCAAAGCTGCCCAAGAAGTCGACAAAATTGAAGGGA
AACGCAAAGGATGTAAAACACACACCGTTGAAGAAAGAAGTTGTTCTGAT
AACCATCCTGCTGTTCAAATCCTTGGCCCTGGAAAAAGCAAGGATAAGGC
AGAGGACCCACAAGGCGAGAAAAAGCATTGACCCTTTTGAAAGGAGGAGC
AGATACTGGCTTCAAACGCGTCTTACCAGAAGCTTATGAGCCAAGACTCT
TCCATGTCAAAAAAGAAAATCGAAAGATCAAATGCACTCAAGTCTCATTG
AAACGAGGAAATTTGACATCTGATGACGTCTTTATCATCGATAACGGATT
GAACATCTACCAAGTCGAACATTGGGAAGATGACCAATACGGTGAATTCT
ACAACGGAGATTCTTACATTATCCTCAACACTTACAAAGAGCCTGAAGGT
GATGAACTCAAACATGACGTTCATTTCTGGATCGGAAAATATTCCACTCA
AGATGAATACGGTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTCT
TGGATGATAAACCAGTACAACATCGCGAAGTTCAAGGACACGAATCTTCA
CTCTTCAAATCATACTTTGATTGTCAAGAAGGAATCGGCAGAGAGTGAAC
CAGCATGGCAAGGAGCTGGTGAAGACGTTGGATTGAAAATCTGGAGAATC
GTCAAATTCCAAATGCAAAAAGCAAAGAAATATGACTGGAAAGACTCCAA
CATGGCCCTGTTTGGCTCTGACACTGAGAAGAAATTTACATTGTGAACAC
TGGAGATCACGTTTATTGTTGGGTCGGCAAAGGAGCCAGCGTTGACGAAC
GAAAGAATGGAATTCCATACGCTTGCAATTACTTGTCCAAAACCGAAACA
CCATGGCTTCCAGTCAGCGTGGTTGCTGAAGGAGCTGAACCCAAAGATGT
CGCTTTCTTCAATTAAGTGTTGAAAATCAAGGATGGTGAAGATGTTGAAG
AAGTATCAAGTGGTGATGACATTTCCAAAGATGCACTCCAATCTGATGAC
GTGGAACGGATCTAAATGCAGTGCAGATGAAAAATTCAAAGCTGCCCAAG
AAGTCGACAAAATTGAAGGGAAACGCAAAGGATGTAAAACACACACCGTT
GAAGAAAGAAGTTGTTCTGATAACCATCCTGCTGTTCAAATCCTTGGCCC
TGGAAAAAGCAAGGATAAGGCAGAGGACCCACAAGGCGAGAAAAAGCATT
GACCCTTTTGAAAGGAGGAGCAGATACTGGCTTCAAACGCGTCTTACCAG
AAGCTTATGAGCCAAGACTCTTCCATGTCAAAAAAGAAAATCGAAAGATC
AAATGCACTCAAGTCTCATTGAAACGAGGAAATTTGACATCTGATGACGT
CTTTATCATCGATAACGGATTGAACATCTACCAAGTCGAACATTGGGAAG
ATGACCAATACGGTGAATTCTACAACGGAGATTCTTACATTATCCTCAAC
ACTTACAAAGAGCCTGAAGGTGATGAACTCAAACATGACGTTCATTTCTG
GATCGGAAAATATTCCACTCAAGATGAATACGGTACAGCAGCTTACAAAA
CTGTTGAATTGGACACCTTCTTGGATGATAAACCAGTACAACATCGCGAA
GTTCAAGGACACGAATCTTCACTCTTCAAATCATACTTTGATTGTCAAGA
AGGAATCGGCAGAGAGTGAACCAGCATGGCAAGGAGCTGGTGAAGACGTT
GGATTGAAAATCTGGAGAATCGTCAAATTCCAAATGCAAAAAGCAAAGAA
ATATGACTGGAAAGACTCCAACATGGCCCTGTTTGGCTCTGACACTGAGA
AGAAATTTACATTGTGAACACTGGAGATCACGTTTATTGTTGGGTCGGCA
AAGGAGCCAGCGTTGACGAACGAAAGAATGGAATTCCATACGCTTGCAAT
TACTTGTCCAAAACCGAAACACCATGGCTTCCAGTCAGCGTGGTTGCTGA
AGGAGCTGAACCCAAAGATGTCGCTTTCTTCAATTAAGTGTTGAAAATCA
AGGATGGTGAAGATGTTGAAGAAGTATCAAGTGGTGATGACATTTCCAAA
GATGCACTCCAATCTGATGACGTGGAACGGATCTAAATGCAGTGCAGATG
AAAAATTCAAAGCTGCCCAAGAAGTCGACAAAATTGAAGGGAAACGCAAA
GGATGTAAAACACACACCGTTGAAGAAAGAAGTTGTTCTGATAACCATCC
TGCTGTTCAAATCCTTGGCCCTGGAAAAAGCAAGGATAAGGCAGAGGACC
CACAAGGCGAGAAAAAGCATTGACCCTTTTGAAAGGAGGAGCAGATACTG
GCTTCAAACGCGTCTTACCAGAAGCTTATGAGCCAAGACTCTTCCATGTC
AAAAAAGAAAATCGAAAGATCAAATGCACTCAAGTCTCATTGAAACGAGG
AAATTTGACATCTGATGACGTCTTTATCATCGATAACGGATTGAACATCT
ACCAAGTCGAACATTGGGAAGATGACCAATACGGTGAATTCTACAACGGA
GATTCTTACATTATCCTCAACACTTACAAAGAGCCTGAAGGTGATGAACT
CAAACATGACGTTCATTTCTGGATCGGAAAATATTCCACTCAAGATGAAT
ACGGTACAGCAGCTTACAAAACTGTTGAATTGGACACCTTCTTGGATGAT
AAACCAGTACAACATCGCGAAGTTCAAGGACACGAATCTTCACTCTTCAA
ATCATACTTTGATTGTCAAGAAGGAATCGGCAGAGAGTGAACCAGCATGG
CAAGGAGCTGGTGAAGACGTTGGATTGAAAATCTGGAGAATCGTCAAATT
CCAAATGCAAAAAGCAAAGAAATATGACTGGAAAGACTCCAACATGGCCC
TGTTTGGCTCTGACACTGAGAAGAAATTTACATTGTGAACACTGGAGATC
ACGTTTATTGTTGGGTCGGCAAAGGAGCCAGCGTTGACGAACGAAAGAAT
GGAATTCCATACGCTTGCAATTACTTGTCCAAAACCGAAACACCATGGCT
TCCAGTCAGCGTGGTTGCTGAAGGAGCTGAACCCAAAGATGTCGCTTTCT
TCAATTAAGTGTTGAAAATCAAGGATGGTGAAGATGTTGAAGAAGTATCA
AGTGGTGATGACATTTCCAAAGATGCACTCCAATCTGATGACGTGGAACG
GATCTAAATGCAGTGCAGATGAAAAATTCAAAGCTGCCCAAGAAGTCGAC
AAAATTGAAGGGAAACGCAAAGGATGTAAAACACACACCGTTGAAGAAAG
AAGTTGTTCTGATAACCATCCTGCTGTTCAAATCCTTGGCCCTGGAAAAA
GCAAGGATAAGGCAGAGGACCCACAAGGCGAGAAAAAGCATTGACCCTTT
TGAAAGGAGGAGCAGATACTGGCTTCAAACGCGTCTTACCAGAAGCTTAT
GAGCCAAGACTCTTCCATGTCAAAAAAGAAAATCGAAAGATCAAATGCAC
TCAAGTCTCATTGAAACGAGGAAATTTGACATCTGATGACGTCTTTATCA
TCGATAACGGATTGAACATCTACCAAGTCGAACATTGGGAAGATGACCAA
TACGGTGAATTCTACAACGGAGATTCTTACATTATCCTCAACACTTACAA
AGAGCCTGAAGGTGATGAACTCAAACATGACGTTCATTTCTGGATCGGAA
AATATTCCACTCAAGATGAATACGGTACAGCAGCTTACAAAACTGTTGAA
TTGGACACCTTCTTGGATGATAAACCAGTACAACATCGCGAAGTTCAAGG
ACACGAATCTTCACTCTTCAAATCATACTTTGATTGTCAAGAAGGAATCG
GCAGAGAGTGAACCAGCATGGCAAGGAGCTGGTGAAGACGTTGGATTGAA
AATCTGGAGAATCGTCAAATTCCAAATGCAAAAAGCAAAGAAATATGACT
GGAAAGACTCCAACATGGCCCTGTTTGGCTCTGACACTGAGAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010719XLOC_010719Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019116-proteinTCONS_00019116-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019116-exon-sc0000319-1575043694:175321..175589TCONS_00019116-exon-sc0000319-1575043694:175321..175589Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1575043694:174992..175081TCONS_00019116-exon-sc0000319-1575043694:174992..175081Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1575043694:174227..174485TCONS_00019116-exon-sc0000319-1575043694:174227..174485Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1575043694:173778..173965TCONS_00019116-exon-sc0000319-1575043694:173778..173965Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1575043694:173351..173545TCONS_00019116-exon-sc0000319-1575043694:173351..173545Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1575043694:172995..173079TCONS_00019116-exon-sc0000319-1575043694:172995..173079Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1575043694:172059..172843TCONS_00019116-exon-sc0000319-1575043694:172059..172843Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1510915933:175321..175589TCONS_00019116-exon-sc0000319-1510915933:175321..175589Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1510915933:174992..175081TCONS_00019116-exon-sc0000319-1510915933:174992..175081Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1510915933:174227..174485TCONS_00019116-exon-sc0000319-1510915933:174227..174485Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1510915933:173778..173965TCONS_00019116-exon-sc0000319-1510915933:173778..173965Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1510915933:173351..173545TCONS_00019116-exon-sc0000319-1510915933:173351..173545Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1510915933:172995..173079TCONS_00019116-exon-sc0000319-1510915933:172995..173079Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1510915933:172059..172843TCONS_00019116-exon-sc0000319-1510915933:172059..172843Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1491911889:175321..175589TCONS_00019116-exon-sc0000319-1491911889:175321..175589Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1491911889:174992..175081TCONS_00019116-exon-sc0000319-1491911889:174992..175081Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1491911889:174227..174485TCONS_00019116-exon-sc0000319-1491911889:174227..174485Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1491911889:173778..173965TCONS_00019116-exon-sc0000319-1491911889:173778..173965Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1491911889:173351..173545TCONS_00019116-exon-sc0000319-1491911889:173351..173545Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1491911889:172995..173079TCONS_00019116-exon-sc0000319-1491911889:172995..173079Clytia hemisphaericaexon
TCONS_00019116-exon-sc0000319-1491911889:172059..172843TCONS_00019116-exon-sc0000319-1491911889:172059..172843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:172059..175589 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1107.62	1162.39	1117.99	1017.27	66.4217	48.4392	29.1506	34.0978	179.34	202.967	110.179	90.3297	534.787	563.131	346.485	288.595	559.719	743.597	1175.38	1309.89	546.872	523.103	637.671	617.093	534.397	513.033	497.689	411.155	230.621	235.643
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007122Villin/Gelsolin
IPR029006ADF-H/Gelsolin-like_dom
IPR007123Gelsolin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0051015actin filament binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0051015 actin filament binding
Blast
[Close]
BLAST of TCONS_00019116 vs. Swiss-Prot (Human)
Match: GELS (Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.956e-52
Identity = 128/341 (37.54%), Postives = 192/341 (56.30%), Query Frame = 3 
Query:  297 PAWQGAGEDVGLKIWRIVKFQVEHWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYFDS-LTLLKGGADTGFKRVLP-EAYEPRLFHVKKENRKIKCTQVSLKRGNLTSDDVFIIDNGLNIYQWNGSKCSADEKFKAAQEVDKI-EGKRKG-CKTHTVEERSCSDNHPAVQILGP------GKSKDKAEDPQGEK--KVLKIKDGEDVEEVSSGDD---ISKDALQSDDVYIVNTGD--HVYCWVGKGASVDERKNGIPYACNYLSKTETP-WLPVSVVAEGAE-PKDVAFF 1262
            P +  AG++ GL+IWR+ KF +     + YG+F+ GD+Y+IL T +   G+ L++D+H+W+G   +QDE G AA  TV+LD +L+ + VQHREVQG ES+ F  YF S L   KGG  +GFK V+P E    RLF VK   R ++ T+V +   +  + D FI+D G NI+QW GS  +  E+ KA Q    I + +R G  + H  EE   ++    +Q+LGP      G      ED    K  K+ K+ +G     VS   D    ++ AL+S+D +I++ G    ++ W GK A+ +ERK  +  A ++++K + P    VSV+ EG E P    FF
Sbjct:   57 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGN-LQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVKGR-RVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEE--GTEPEAMLQVLGPKPALPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFF 393

HSP 2 Score: 115.931 bits (289), Expect = 8.035e-27
Identity = 99/319 (31.03%), Postives = 145/319 (45.45%), Query Frame = 3 
Query:  333 KIWRIVKFQVEHWEDDQYGEFYNGDSYIILNTYKEPEGDELKHDVHFWIGKYSTQDEYGTAAYKTVELDTFLDDKPVQHREVQGHESSLFKSYF--DSLTLLKGGADTGFKRVLPEAYEPRLFHVKKENR-KIKCTQVSLKRGNLTSDDVFIIDNGLNIYQWNGSKCSADEKFKAAQEVDKIEGKRKGCKTHTVEERSCSDNHPAVQILGPGKS--------KDKAEDPQGEKK-VLKIKDGEDVEEVSSGDDISKDALQSDDVYIVNTGDHVYCWVGKGASVDERKNGIPYACNYL---SKTETPWLPVSVVAEGAEP 1244
            +IWRI        +   YG+FY GDSYIIL  Y+   G      ++ W G  STQDE   +A  T +LD  L   PVQ R VQG E +   S F    + + KGG      +  P +   RLF V+  +    +  +V  K G L S+D F++      Y W G+  S  EK   AQE+ ++       +   V+    S+     + LG GK+        KDK  D    +      K G  V E   G+ + +D L +DDV +++T D V+ WVGK +  +E+   +  A  Y+           P++VV +G EP
Sbjct:  448 QIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRH--GGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPAST--RLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEK-TGAQELLRV------LRAQPVQVAEGSEPDGFWEALG-GKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQED-LATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEP 753
The following BLAST results are available for this feature:
BLAST of TCONS_00019116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GELS2.956e-5237.54Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1[more]
back to top