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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019117 ID=TCONS_00019117|Name=TCONS_00019117|organism=Clytia hemisphaerica|type=transcript|length=438bp
CCCATTTATGGAAATCGCTGCTGGAAATTTCATGAACAATCTCTTATCAA
ACATCAGTAGCATTGAGACTTTAAAGATGAAATCAACCCACGGCGATCCG
CGAAACGCCAAAACAAAATACCAAATCGATGCCAATGCTGAATTCCATTC
CTCCATGAAATCAAAATACTTGAAAGGCTTGAGCTTTGGAATTCAAATTC
ATGGTGCAAACCTCGAATTTATCAAGATCCATTTTCTACATGATGACAAT
CAGTGCCGCCACGAGCCTGAAGGTATTTTGGGATTTATTTCAACCGAGAT
GAAGAGATTGGCTCAGAAAATGCCAGGAGAGACCGAACCTTTTTATGAAA
ACAAAGAGGTAGCTCTTAATAAACATCGATGCAAGAATGAAGATTTTCTG
ATGCACGCAATCGATATGACTTACATGGAAGGTGCAAA Run BLAST on NCBI protein sequence of TCONS_00019117-protein >TCONS_00019117-protein ID=TCONS_00019117-protein|Name=TCONS_00019117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
PFMEIAAGNFMNNLLSNISSIETLKMKSTHGDPRNAKTKYQIDANAEFHS
SMKSKYLKGLSFGIQIHGANLEFIKIHFLHDDNQCRHEPEGILGFISTEM
KRLAQKMPGETEPFYENKEVALNKHRCKNEDFLMHAIDMTYMEGA Run BLAST on NCBI transcript from alignment at sc0000319:181763..182912- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019117 ID=TCONS_00019117|Name=TCONS_00019117|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0000319:181763..182912- (Clytia hemisphaerica)
CCCATTTATGGAAATCGCTGCTGGAAATTTCATGAACAATCTCTTATCAA
ACATCAGTAGCATTGAGGTAGATTATTTTTTAACATCTCTGTTGTAACTG
GGTTCTAAAATTCTCTCCTAAATGTGGGGAGAGCGTTGCTTGGAAATGCC
TTTTCTACCCTGTGAGTATAATATTTACAATAGGAACTCTTTATCTCGCC
TNTTGTTGTAACTGGATTCTAAAATTCTCTCCTAAATGTGGAGAGAGCGT
TGCTTGGCAATTCCTTTTTTACCCTGTGAGTATAATATTTACAATAGGAA
ATCTTTATCTCGACTAACCTTTACCACAAATCTCTTGAAAGAATACTTTG
GTTATTATAGGCTAGATTTCGTATTTTCTTCTATCTCAACTGTTGGCATT
ATCACTGAAATCTTGTTCTTTTTTATTATCTATGGTTTTATAGCGATCAG
TACTTTACTTAGACTCGTTAAGGCCTGCCTAGCAAGCCCCTAGCAATTGC
TGGACAAAGAAAACAAAAATAAACTTATTTTTATCTTCACAATAGACTTT
AAAGATGAAATCAACCCACGGCGATCCGCGAAACGCCAAAACAAAATACC
AAATCGATGCCAATGCTGAATTCCATTCCTCCATGAAATCAAAATACTTG
AAAGGCTTGAGCTTTGGAATTCAAATTCATGGTGCAAACCTCGAATTTAT
CAAGATCCATTTTCTACATGATGACAATCAGTGCCGCCACGAGGTAAACA
CATTTCCTTTTTTGAGGAAAAAGTAATGGAAAGCAATAAACTGAAATTCA
TTATTATTTTTACGATTAAGAAAAGCAACCAGTCATTTTTAATTGATGCA
GCTTTCTCGACATCCTTAACTTAGCCATATGGTTTGACCAGTCCCGTTAA
CGCCCTAAATCGATAGCTTCCTCAACGAACATGTATTTTACGTTTTTACA
AAATCTAATTTTTTCTTTCATTTACAGCCTGAAGGTATTTTGGGATTTAT
TTCAACCGAGATGAAGAGATTGGCTCAGAAAATGCCAGGAGAGACCGAAC
CTTTTTATGAAAACAAAGAGGTAGCTCTTAATAAACATCGATGCAAGAAT
GAAGATTTTCTGATGCACGCAATCGATATGACTTACATGGAAGGTGCAAA
Coding sequence (CDS) from alignment at sc0000319:181763..182912- >TCONS_00019117 ID=TCONS_00019117|Name=TCONS_00019117|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at sc0000319:181763..182912- (Clytia hemisphaerica)
CCTGAAGGTATTTTGGGATTTATTTCAACCGAGATGAAGAGATTGGCTCA
GAAAATGCCAGGAGAGACCGAACCTTTTTATGAAAACAAAGAGGTAGCTC
TTAATAAACATCGATGCAAGAATGAAGATTTTCTGATGCACGCAATCGAT
ATGACTTACATGGAAGGTGCAACTTTAAAGATGAAATCAACCCACGGCGA
TCCGCGAAACGCCAAAACAAAATACCAAATCGATGCCAATGCTGAATTCC
ATTCCTCCATGAAATCAAAATACTTGAAAGGCTTGAGCTTTGGAATTCAA
ATTCATGGTGCAAACCTCGAATTTATCAAGATCCATTTTCTACATGATGA
CAATCAGTGCCGCCACGAGCCATTTATGGAAATCGCTGCTGGAAATTTCA
TGAACAATCTCTTATCAAACATCAGTAGCATTGAGCCTGAAGGTATTTTG
GGATTTATTTCAACCGAGATGAAGAGATTGGCTCAGAAAATGCCAGGAGA
GACCGAACCTTTTTATGAAAACAAAGAGGTAGCTCTTAATAAACATCGAT
GCAAGAATGAAGATTTTCTGATGCACGCAATCGATATGACTTACATGGAA
GGTGCAACTTTAAAGATGAAATCAACCCACGGCGATCCGCGAAACGCCAA
AACAAAATACCAAATCGATGCCAATGCTGAATTCCATTCCTCCATGAAAT
CAAAATACTTGAAAGGCTTGAGCTTTGGAATTCAAATTCATGGTGCAAAC
CTCGAATTTATCAAGATCCATTTTCTACATGATGACAATCAGTGCCGCCA
CGAGCCATTTATGGAAATCGCTGCTGGAAATTTCATGAACAATCTCTTAT
CAAACATCAGTAGCATTGAGCCTGAAGGTATTTTGGGATTTATTTCAACC
GAGATGAAGAGATTGGCTCAGAAAATGCCAGGAGAGACCGAACCTTTTTA
TGAAAACAAAGAGGTAGCTCTTAATAAACATCGATGCAAGAATGAAGATT
TTCTGATGCACGCAATCGATATGACTTACATGGAAGGTGCAACTTTAAAG
ATGAAATCAACCCACGGCGATCCGCGAAACGCCAAAACAAAATACCAAAT
CGATGCCAATGCTGAATTCCATTCCTCCATGAAATCAAAATACTTGAAAG
GCTTGAGCTTTGGAATTCAAATTCATGGTGCAAACCTCGAATTTATCAAG
ATCCATTTTCTACATGATGACAATCAGTGCCGCCACGAGCCATTTATGGA
AATCGCTGCTGGAAATTTCATGAACAATCTCTTATCAAACATCAGTAGCA
TTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019117-exon-sc0000319-1575043694:182846..182912 | TCONS_00019117-exon-sc0000319-1575043694:182846..182912 | Clytia hemisphaerica | exon |
| TCONS_00019117-exon-sc0000319-1575043694:182170..182367 | TCONS_00019117-exon-sc0000319-1575043694:182170..182367 | Clytia hemisphaerica | exon |
| TCONS_00019117-exon-sc0000319-1575043694:181763..181935 | TCONS_00019117-exon-sc0000319-1575043694:181763..181935 | Clytia hemisphaerica | exon |
| TCONS_00019117-exon-sc0000319-1510915933:182846..182912 | TCONS_00019117-exon-sc0000319-1510915933:182846..182912 | Clytia hemisphaerica | exon |
| TCONS_00019117-exon-sc0000319-1510915933:182170..182367 | TCONS_00019117-exon-sc0000319-1510915933:182170..182367 | Clytia hemisphaerica | exon |
| TCONS_00019117-exon-sc0000319-1510915933:181763..181935 | TCONS_00019117-exon-sc0000319-1510915933:181763..181935 | Clytia hemisphaerica | exon |
| TCONS_00019117-exon-sc0000319-1491911889:182846..182912 | TCONS_00019117-exon-sc0000319-1491911889:182846..182912 | Clytia hemisphaerica | exon |
| TCONS_00019117-exon-sc0000319-1491911889:182170..182367 | TCONS_00019117-exon-sc0000319-1491911889:182170..182367 | Clytia hemisphaerica | exon |
| TCONS_00019117-exon-sc0000319-1491911889:181763..181935 | TCONS_00019117-exon-sc0000319-1491911889:181763..181935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:181763..182912 - |
Blast
The following BLAST results are available for this feature:
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