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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019120 ID=TCONS_00019120|Name=TCONS_00019120|organism=Clytia hemisphaerica|type=transcript|length=1462bp
AAGTATCTCTTCAATATACTAACAATCAATTGTCAAAAATGAGTTTAGAA
ACTGATCGCGTCAGTCTGCCACTTGGTGAAAATTCTTCCTTTTCAAATCT
TTCAAGCAACAGACCGGTTTCACCCGGTGATACAATTAGCAGACAGATCC
CACCTCTACCTTACAACAATAGACCAACCCCACCGGTACCAAGCAGTAGT
AGGCCTATCCCATCGCCGCCTAACAACAACAGATCCACCCCCACGTCACC
TAGCAATATTTCACCTATTGCACCACCACGTTTACCAAATTTCACCAGTA
CAACTGCAAACGTTTCACATcctatactgaatgaaaaaagtaaatCCTGG
GCGCCGACGCCTGCCCCAAGGCGTACTGGAAATGTCACCAAAACTACTTC
AGATCATGAAGAAGGTTATGTCACTCTACAACGATCGCGTTCTGAAATCG
AAAGCTCGTACGTGACAATGCGAAGCACTATACCACAACCTCCGCGTACC
TCCAATAGAGAAACAGAAGCGTCACGAAATAACATGTTTCGAAATTCCCA
GAACACTTCTTTAGATTCGAAAGGCTACATCCTTCAATCTCATCCTCCAG
ACGTTGATCCATACGCTAACCCTGATCATGTTTTAACGAACAATAATACT
CTTCCCACAAATGATCACCATCAAACGAGGGATTGTTTTTTACCAACTGA
AGCTTATTTTGTTGGAGTAGATCGAGATGATTGTTACAAGTATTTGGCTG
GATGGCCCTTAGGGACTTACTTAATCAGAACGAAACGGCGAGATGGGAAA
GACGCTTTGGGAGTGAAAGTGTCCAACAAAAACGACCCCACTGATGTCAA
GCATTACATTATTTTCTTCAAAGAGAAAACATATTACTTGGATCGTAACA
CTGATGAAAGATTCGAAGACGTCTTATCTCTCATCAAATATTATCATAGA
AACGAATTACCAACTTGCAAACAAAAACTCACACAGCCTGTGCTCTGAGG
ATAACAAGTCTTCTTTTCTCCACGTTGACATGGCAAAGCTGAGCACATTA
GCTTTTACAAGTCACCGAGATTAACTCactagcgagattatgtatcggag
atattctacggctacggttgcggggctgcccatgcgggtcgtcaccaaag
gcgacatgtcgttgtctactttgctctgtacgagaaaaacaccgtataag
caaagtcgacataatgccgtacgtcaaatatcgaacttgctttcacccgc
cattacttgccttactcgccatttccctcgccgctttagccgtagccgta
gagaattccagatacataatctcgctactGAATAACCagggatttttttc
atttcgaatttacacgctttttctagtataagaatacactttatatgaac
gtccatgatgaaaatggccctcatggaattttgctactcaagctaagaat
gctacttttaaa Run BLAST on NCBI transcript from alignment at sc0000319:255334..260614- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019120 ID=TCONS_00019120|Name=TCONS_00019120|organism=Clytia hemisphaerica|type=transcript|length=5281bp|location=Sequence derived from alignment at sc0000319:255334..260614- (Clytia hemisphaerica)
AAGTATCTCTTCAATATACTAACAATCAATTGTCAAAAATGAGTTTAGAA
ACTGATCGCGTCAGTCTGCCACTTGGTGAAAATTCTTCCTTTTCAAATCT
TTCAAGCAACAGACCGGTTTCACCCGGTGATACAATTAGCAGACAGATCC
CACCTCTACCTTACAACAATAGACCAACCCCACCGGTACCAAGCAGTAGT
AGGCCTATCCCATCGCCGCCTAACAACAACAGATCCACCCCCACGTCACC
TAGCAATATTTCACCTATTGCACCACCACGTTTACCAAATTTCACCAGTA
CAACTGCAAACGTTTCACATCCTATACTGAATGAAAAAAGTAAATCCTGG
GCGCCGACGCCTGCCCCAAGGCGTACTGGAAATGTCACCAAAACTACTTC
AGATCATGAAGAAGGTTATGTCACTCTACAACGATCGCGTTCTGAAATCG
AAAGCTCGTACGTGACAATGCGAAGCACTATACCACAACCTCCGCGTACC
TCCAATAGAGAAACAGAAGCGTCACGAAATAACATGTTTCGAAATTCCCA
GAACACTTCTTTAGATTCGAAAGGCTACATCCTTCAATCTCATCCTCCAG
ACGTTGATCCATACGCTAACCCTGATCATGTTTTAACGAACAATAATACT
CTTCCCACAAATGATCACCATCAAACGAGGGATTGTTTTTTACCAACTGA
AGCTTATTTTGTTGGAGTAGATCGAGATGATTGTTACAAGTAATTCTTTA
AATCCTTAGCAGATTTACGCAACAAAATTTTCAGCTCAGATATTCTATTT
CCAACTTGGTGCCTAAGGTTAAAAGCTGATGAAATTGTAATTGTCTTGTT
CCCTTGTGATAAGGAAGCCATATTTTTTGTACAGGCCTTTGGAATTTCTT
CTGGGATTTAAGGCTGTTGAACGGTTCTTAGCTCGTTTCTGAAATTAAGA
CTTCTGCAGTCATAAAACTATTCTTATAAAAAACATGATAAAAAACACGG
GCTATTTTAATAATTTTGTCACTTTTTATCTCTTCATCAGGTATTTGGCT
GGATGGCCCTTAGGGACTTACTTAATCAGAACGAAACGGCGAGATGGGGT
AAGTATGTCTGTTCTCGTCAGTTTACTTAATTCACCTTCTAAGCTACTTT
AGAAACAAATTAGGCTTTTTCCAAAGAAACAAAAAATGAGTGTGTTAAGG
ACATCGATTTAGGACCCTTTTTTTAGATCTGTGTAATTCGGCAGGTTTAA
TGAATGAATCTCAACTCCAACAGTGCTTGCTTTAAGAATTGATACCACTT
GAAAATATTTCCAATATTTTGTGTGATTTTTGATTTTCAAAACTAAAGTA
TATGACCCCCCCTGGATTTTCTCATAACTTCCATGTGGATAATTTTCTTG
TAAAGCCTAGTGGTGCTCAAAATATTCCTTCGAAAAATAATGACAATGTG
TTTAAATATTCTCTTCGGCGAAGATTATCTGAATAATAAAGGCCAACAAG
CTAGGAAACCCTTTTCATTTTCTCTTTTCAGAAAGACGCTTTGGGAGTGA
AAGTGTCCAACAAAAACGACCCCACTGATGTCAAGCATTACATTATTTTC
TTCAAAGTAAGTTGCAGTTGATGTATTCTTTACTTTTGATCCTATTTAAG
GTATCATATAAATATAGAAAAAGCTTATTTAAAAAAAGTTAGGTGTGATA
ATTTTTAAATAAAGGTGGATCTTTCGCTTTGCCACGCCCTTGCTTAAGAA
AAGCTTATTTCGATAGCAAACCTTATAAGTACTTATTTATACCATTTGAT
CAGAAAGTTTTCGTAAAGGTCAGAATGACGGTCTGAAAANCTTTTTCCAA
AGAAACAAAAAATGAGTGTGTTAAGGACATCGATTTAGGACCCTTTTTTT
AGATCTGTGTAATTCGGCAGGTTTAATGAATGAATCTCAACTCCAACAGT
GCTTGCTTTAAGAATTGATACCACTTGAAAATATTTCCAATATTTTGTGT
GATTTTTGATTTTCAAAACTAAAGTATATGACCCCCCCTGGATTTTCTCA
TAACTTCCATGTGGATAATTTTCTTGTAAAGCCTAGTGGTGCTCAAAATA
TTCCTTCGAAAAATAATGACAATGTGTTTAAATATTCTCTTCGGCGAAGA
TTATCTGAATAATAAAGGCCAACAAGCTAGGAAACCCTTTTCATTTTCTC
TTTTCAGAAAGACGCTTTGGGAGTGAAAGTGTCCAACAAAAACGACCCCA
CTGATGTCAAGCATTACATTATTTTCTTCAAAGTAAGTTGCAGTTGATGT
ATTCTTTACTTTTGATCCTATTTAAGGTATCATATAAATATAGAAAAAGC
TTATTTAAAAAAAGTTAGGTGTGATAATTTTTAAATAAAGGTGGATCTTT
CGCTTTGCCACGCCCTTGCTTAAGAAAAGCTTATTTCGATAGCAAACCTT
ATAAGTACTTATTTATACCATTTGATCAGAAAGTTTTCGTAAAGGTCAGA
ATGACGGTCTGAAAACCTGTTGCATGATAACGTTTCAAAATAAATATTTG
AGTTCAATCTCTTTCTTGTGAGAGCGACAACACAAAAAATCTGCTTTTGC
GGAAATTTTACAGTACGACGCCCCAAAACTTAATAAGATCACAAAAGTCA
AAATTGGTTTGAAAAGCCTGGTATATTCAATCGCACTCAGACCCTAGAAC
ATTTGATTCCAAAGCAAATGACTTTCTTTTTTCCCGGCAATCTTCTTTTT
CCTCAATCAATAAGCACTATAACAATATTCAACTTAAACGATTTATAAAT
GAGATTCGAACAACTTGATTTAAAGTGTCAAACCGAAACCACCCACTGGC
TAACGTGCTTCTATATCCATATTATATATATATATTGATGATTTGTGTGC
CTTAAATGACAGAGATGAGTTTCATAATTGCTACAAACAGATTTACCCTA
AAGAACTAGATCTCAAAGTTGAGCACCATGGAAACCATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCTTAACTTT
TTTCGTTTTTATCAGTTTGAGTTATTTATATATCAATACTTTTCTTTTTC
TAAAATGACAGATATTACATATCTTCACTATATATAGGCACCCGGATGAA
GAAATTCTCATCCGACACGCTAAAGCTCTAAAAGGTCGGGAAAATTTTTA
ACATCTGGAAGGTTTAGAATATGAATTTAGCAAGACCCTGTCAAGGATTT
AGCAGCGAGCGTTTTCGGGGGATTGGCGGGTCCAACCGAAATATTTTAAG
GTTTACGCGCAAGGTTGGTTGGACCCGACTGGGGATGCGACACATCCGAG
GCCGACTTACAATCATCTCCGATGGTATATTGGTCCGCTCCTTTAGAGCT
TCAGCGTGGGCGGCCGCCAATACGCCATCGGAATATCAGATAACAATACC
CATAACAATAATCGATTCCGGCTCTTTTTTTCATCGCTCAGGAGAAAACA
TATTACTTGGATCGTAACACTGATGAAAGATTCGAAGACGTCTTATCTCT
CATCAAATATTATCATAGAAACGAATTACCAACTTGCAAACAAAAACTCA
CACAGCCTGTGCTCTGAGGATAACAAGTCTTCTTTTCTCCACGTTGACAT
GGCAAAGCTGAGCACATTAGCTTTTACAAGTCACCGAGATTAACTCACTA
GCGAGATTATGTATCGGAGATATTCTACGGCTACGGTTGCGGGGCTGCCC
ATGCGGGTCGTCACCAAAGGCGACATGTCGTTGTCTACTTTGCTCTGTAC
GAGAAAAACACCGTATAAGCAAAGTCGACATAATGCCGTACGTCAAATAT
CGAACTTGCTTTCACCCGCCATTACTTGCCTTACTCGCCATTTCCCTCGC
CGCTTTAGCCGTAGCCGTAGAGAATTCCAGATACATAATCTCGCTACTGA
ATAACCAGGGATTTTTTTCATTTCGAATTTACACGCTTTTTCTAGTATAA
GAATACACTTTATATGAACGTCCATGATGAAAATGGCCCTCATGGAATTT
TGCTACTCAAGCTAAGAATGCTACTTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019120-exon-sc0000319-1575043694:259876..260614 | TCONS_00019120-exon-sc0000319-1575043694:259876..260614 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1575043694:259517..259574 | TCONS_00019120-exon-sc0000319-1575043694:259517..259574 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1575043694:258333..258407 | TCONS_00019120-exon-sc0000319-1575043694:258333..258407 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1575043694:255334..255923 | TCONS_00019120-exon-sc0000319-1575043694:255334..255923 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1510915933:259876..260614 | TCONS_00019120-exon-sc0000319-1510915933:259876..260614 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1510915933:259517..259574 | TCONS_00019120-exon-sc0000319-1510915933:259517..259574 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1510915933:258333..258407 | TCONS_00019120-exon-sc0000319-1510915933:258333..258407 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1510915933:255334..255923 | TCONS_00019120-exon-sc0000319-1510915933:255334..255923 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1491911889:259876..260614 | TCONS_00019120-exon-sc0000319-1491911889:259876..260614 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1491911889:259517..259574 | TCONS_00019120-exon-sc0000319-1491911889:259517..259574 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1491911889:258333..258407 | TCONS_00019120-exon-sc0000319-1491911889:258333..258407 | Clytia hemisphaerica | exon |
| TCONS_00019120-exon-sc0000319-1491911889:255334..255923 | TCONS_00019120-exon-sc0000319-1491911889:255334..255923 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:255334..260614 - |
Blast
The following BLAST results are available for this feature:
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