TCONS_00019124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019124
Unique NameTCONS_00019124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019124 ID=TCONS_00019124|Name=TCONS_00019124|organism=Clytia hemisphaerica|type=transcript|length=343bp
AGAGAATGAGTGATGCCACGATTCTTCCAACAAATGTCTACCGATGGAAC
ATGAAAAGAGAAAATGCCATCGAATTGCTGAAAGCGAAGAATGTCATTGG
AACTTATCTAATCCGAAAAAACTCTGACGAGAGACACGTGTTGACAATTT
ATACTGCAGAGAAACAGAGTTGTCGTCattttatcatatttcaaaagaaC
GGGCAGCAATTCCTTGCCAGTGAACCGGAGCCGAAATTCACAAAGATTGG
TGATCTTATACGGTATTATATGAAAAACAATCTACCAACTTGTAAAATTC
GCTTAAAGCAACCCTACTCTTAGTTTTGTATGTGATAACGTAT
Run BLAST on NCBI

protein sequence of TCONS_00019124-protein

>TCONS_00019124-protein ID=TCONS_00019124-protein|Name=TCONS_00019124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
RMSDATILPTNVYRWNMKRENAIELLKAKNVIGTYLIRKNSDERHVLTIY
TAEKQSCRHFIIFQKNGQQFLASEPEPKFTKIGDLIRYYMKNNLPTCKIR
LKQPYS
Run BLAST on NCBI

transcript from alignment at sc0000319:266195..268635-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019124 ID=TCONS_00019124|Name=TCONS_00019124|organism=Clytia hemisphaerica|type=transcript|length=2441bp|location=Sequence derived from alignment at sc0000319:266195..268635- (Clytia hemisphaerica)
AGAGAATGAGTGATGCCACGATTCTTCCAACAAATGTCTACCGATGGAAC
ATGAAAAGAGAAAATGCCATCGAGTATGCTTGTTGTTTCTTCTCCTCTAT
ATGAATTAGTTTCTGATAGTCTGAGCTTATCAAACAACTAGAAAATGAGA
TGGCTGATCGAAGCATTACTCACGGCCCACGCCATGGAATTGAAGGGGCA
CGCCATGAAATTGAAAGAAAGGGGACAATGAATATACAGTCTGAGGAGGC
GCAACTAAAAATTTTTACTTTGCAAAAAAGTGGGGGGCATGACCCTTCTG
GCCCCCGGTGGCGTGGGGACTGTTATTAGCTAAATTTTATTGATTGATTG
ATTGATTGATTTACCTTTTGATTTTATCTATGACAGATTGCTGAAAGCGA
AGAATGTCATTGGAACTTATCTAATCCGAAAAAACTCTGACGAGGTCAGT
GTTATGTGATGTTTTTATTATAGTGGAAGTTGGTAATCACCACCAAAATT
GAACTTATCCGGTGGTCTATTACTAAACCATACAGGGTAGTGCTGTAACT
TTTCTGTCTGTAGACGGATATCCACCCAGTTTAGAACAATGACACCCTTG
TGTCACATACCTACTGGGACCCCAGCCCCACTATAAAATTAGGCAAAAAT
TTCGTCCCGTTGAGAAAATAACCTGGAATTTCAGCCCCACTGGGAATTTG
ACTTTGATTTCATTCCCATTCGAGATCCAATGTTTAAAAATTGCACTCAA
AAACCATTCCCACTGGACTTTTAAACCTTGGAACAATTAATATAGGGGCT
GTGAGACAGAGGTGTTTTAGATTTTTCACTTAGATTTCCGTCTCAATTAT
AAACCTTTGCCTTTGAAGAACGATAGTCTTTGTATAATTTTGAATTTCCC
GTCAAGATTTATCAAAAGGTTGTTGCAACACGGAGGTTTTAAATTATCAC
CTGGATTTGATTGACCAAGGTTACCCTTTTGAACACTTTGTTCTTTTGGA
ATAGCATTGGTTATTAGGGCTGTTCATACTTTGCTCCATAAACTATCAAC
AAGAAAGATGAAAGTTCGTCATCAAAACTTGAAAGAATCAACCCACTCAA
GTCTTTGAGATATGACAATTTTGAGATTGCTCTAATTTGATATGTCGTCT
GTTTTAAAAATGAAAGTAATTTAATCCTTGATAAAAGAGAAAGAGATTGC
CTCTCTTTTTTTATTCATGATGCTTTGATAGATGTTGTTATAGAAAACTT
CTTAATCGAAAGACTTATTAACAAGGTATTTGTGGTTTGTTTCTTATGAC
ATTGTCAATATACTACACTTTACATGAAACCTCATATGAGAAGATGTTTC
ATAGTATTTTTGGTGAATTATTGTATGTTTTCCTTCACCAAAAATCTGAG
AAAGGATTTGGTCTGAGTTTTAAAGTTAGATTTCAGCTTTGATGATTTGA
AGGGAGCTCATGAAATAACCTTCTCATGGATTTCTCTTTACAGAGACACG
TGTTGACAATTTATACTGCAGAGAAACAGAGTTGTCGTCATTTTATCATA
TTTCAAAAGAACGTAAGTTCTCCATTTTGCCTTTTTGTCTTAAATAAAAA
GTCTATTTGTGTAAGATGAAACTGTAGTTTTATCATTTCATTGTCTACTT
AAGTTTACCTCCTTATAAGCTAGCTATATACTCTGCTGTTGAAAAGTTTT
CCTTGTATGCAAGAATGCATGTATCCAGAAATTGTTAACCAGTTTGAGTA
AGAATAAAACTCAAAGCTTGGAGCATTTATTATCTTTCACAAAAATCATA
TGAAAAGTAGTTTCAGTTTGTCCCTCATTGAAATAGATTTGTCGTGTTTT
ATTATTGTTGTTGTACGAATCATTTATTCAACAAATGCGTAATGATCGTC
ACTATGCGGGAATCAACTTTCCATTCTAATATTCTTTGACAACCACAGTG
TAACTGATTCTTCAAGTTTACACGTTCTTTCTTTATAAGAACAAACTTTA
TAAGAACATAAGGCTGGCCAAAATGTTAAGAACAAGTTAAGAACATTTTA
AGTCTTTGTAGACTCAAAACACCCTATTTCTTAGGAAAATTAAAAACTCA
AAAAGTCAAGAATTTTTGATGCTCTTATAAAAAACGCGCATTCGCTTTAA
TGATCAATAGGGGACTTCAAGGTCATGAGAGAGTTTTGTCCTGCATTTCA
AATTCACTTTTCCTCCTACTTGGAGAAAAAGATTAACTAGTCTTCTTGTA
AAAGAGTGTCCTTCAATACTCCATATCTTTGATTGTTTCGTTTTTCAGGG
GCAGCAATTCCTTGCCAGTGAACCGGAGCCGAAATTCACAAAGATTGGTG
ATCTTATACGGTATTATATGAAAAACAATCTACCAACTTGTAAAATTCGC
TTAAAGCAACCCTACTCTTAGTTTTGTATGTGATAACGTAT

Coding sequence (CDS) from alignment at sc0000319:266195..268635-

>TCONS_00019124 ID=TCONS_00019124|Name=TCONS_00019124|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000319:266195..268635- (Clytia hemisphaerica)
GGGCAGCAATTCCTTGCCAGTGAACCGGAGCCGAAATTCACAAAGATTGG
TGATCTTATACGGTATTATATGAAAAACAATCTACCAACTTGTAAAATTC
GCTTAAAGCAACCCTACTCTTAGAGACACGTGTTGACAATTTATACTGCA
GAGAAACAGAGTTGTCGTCATTTTATCATATTTCAAAAGAACATTGCTGA
AAGCGAAGAATGTCATTGGAACTTATCTAATCCGAAAAAACTCTGACGAG
AGAATGAGTGATGCCACGATTCTTCCAACAAATGTCTACCGATGGAACAT
GAAAAGAGAAAATGCCATCGAGGGCAGCAATTCCTTGCCAGTGAACCGGA
GCCGAAATTCACAAAGATTGGTGATCTTATACGGTATTATATGAAAAACA
ATCTACCAACTTGTAAAATTCGCTTAAAGCAACCCTACTCTTAGAGACAC
GTGTTGACAATTTATACTGCAGAGAAACAGAGTTGTCGTCATTTTATCAT
ATTTCAAAAGAACATTGCTGAAAGCGAAGAATGTCATTGGAACTTATCTA
ATCCGAAAAAACTCTGACGAGAGAATGAGTGATGCCACGATTCTTCCAAC
AAATGTCTACCGATGGAACATGAAAAGAGAAAATGCCATCGAGGGCAGCA
ATTCCTTGCCAGTGAACCGGAGCCGAAATTCACAAAGATTGGTGATCTTA
TACGGTATTATATGAAAAACAATCTACCAACTTGTAAAATTCGCTTAAAG
CAACCCTACTCTTAGAGACACGTGTTGACAATTTATACTGCAGAGAAACA
GAGTTGTCGTCATTTTATCATATTTCAAAAGAACATTGCTGAAAGCGAAG
AATGTCATTGGAACTTATCTAATCCGAAAAAACTCTGACGAGAGAATGAG
TGATGCCACGATTCTTCCAACAAATGTCTACCGATGGAACATGAAAAGAG
AAAATGCCATCGAGGGCAGCAATTCCTTGCCAGTGAACCGGAGCCGAAAT
TCACAAAGATTGGTGATCTTATACGGTATTATATGAAAAACAATCTACCA
ACTTGTAAAATTCGCTTAAAGCAACCCTACTCTTAGAGACACGTGTTGAC
AATTTATACTGCAGAGAAACAGAGTTGTCGTCATTTTATCATATTTCAAA
AGAACATTGCTGAAAGCGAAGAATGTCATTGGAACTTATCTAATCCGAAA
AAACTCTGACGAGAGAATGAGTGATGCCACGATTCTTCCAACAAATGTCT
ACCGATGGAACATGAAAAGAGAAAATGCCATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010723XLOC_010723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019124-exon-sc0000319-1575043694:268563..268635TCONS_00019124-exon-sc0000319-1575043694:268563..268635Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1575043694:268192..268249TCONS_00019124-exon-sc0000319-1575043694:268192..268249Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1575043694:267074..267142TCONS_00019124-exon-sc0000319-1575043694:267074..267142Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1575043694:266195..266337TCONS_00019124-exon-sc0000319-1575043694:266195..266337Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1510915933:268563..268635TCONS_00019124-exon-sc0000319-1510915933:268563..268635Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1510915933:268192..268249TCONS_00019124-exon-sc0000319-1510915933:268192..268249Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1510915933:267074..267142TCONS_00019124-exon-sc0000319-1510915933:267074..267142Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1510915933:266195..266337TCONS_00019124-exon-sc0000319-1510915933:266195..266337Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1491911889:268563..268635TCONS_00019124-exon-sc0000319-1491911889:268563..268635Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1491911889:268192..268249TCONS_00019124-exon-sc0000319-1491911889:268192..268249Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1491911889:267074..267142TCONS_00019124-exon-sc0000319-1491911889:267074..267142Clytia hemisphaericaexon
TCONS_00019124-exon-sc0000319-1491911889:266195..266337TCONS_00019124-exon-sc0000319-1491911889:266195..266337Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019124-proteinTCONS_00019124-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:266195..268635 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05903	1.2909	1.19909	0.879842	8.92603	3.6678	3.35466	5.75775	6.9163	7.7379	11.0855	5.52139	7.23067	7.13166	18.4916	20.0057	6.52929	8.50233	15.7608	16.9314	5.92682	3.74579	5.4642	6.62366	18.1909	10.4177	8.34983	6.19907	3.52633	0.898193
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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