TCONS_00019148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019148
Unique NameTCONS_00019148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019148 ID=TCONS_00019148|Name=TCONS_00019148|organism=Clytia hemisphaerica|type=transcript|length=783bp
GAGCAGGATCATGAACGTAACCACAGGCAAATGTTAGAGGGGAATATAGC
AAATGGTTTCAGAGCCAACCATCATGTAAGTATAAGCTACTGTCTGGATA
CATAATGCAAAGCAATGGCTTTTTACAAGACGATCGACTTCTTGGTCAAT
TTGCACGTTCAATGTGCGGCAAGAGGCCCGGGCAACCCTCATCAAATGAT
CTTCCGATTGGCAAATGGCTTCAGGGCAGAAAATTATGTCTTTAGCATGA
GCGAAACCAGACAgatgcttgaaaataatatggCAAATGGCTTCAGAGCA
GAAAATTTATGTTAAAACGAAAGAAATCATATGCAGTTACTGGAAAACAG
ATTGGCAAATGGTTTCAAGGCAGAAAATTATTGTCTgcttcaaacaaaag
aaatcagGCAATTACTATCTGGATCGACTTCTTGGTCAATTTTGAAACTA
TATCTTTAATGATGGTTTGGTTTTATTTAAAATATTCCCATTTACGAACT
TGCACGTTCAATGTGCGGCAAGAGGCCCGGGCAACCCTCATCAAATGATC
TTCCGATTGGCAAATGGCTTCAGGGCAGAAAATTATTGTCtgcttcaaac
aaaaaaaatcaggcAATTACTATCTGGATAATGCAAAGCAATGGCTTTTT
ACAACTTGTTTTCACTGGTTTTCAATAGTGGAATTTTAGTGACGATTATG
GAGATGAAATGTGAACTAGACGCTTACGTTTAACAGAAATGTAACTTTTA
CGGCTTTTCAATCGTTTCGAAATGGAATATGAC
Run BLAST on NCBI

transcript from alignment at sc0000319:312014..312796

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019148 ID=TCONS_00019148|Name=TCONS_00019148|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at sc0000319:312014..312796 (Clytia hemisphaerica)
GTCATATTCCATTTCGAAACGATTGAAAAGCCGTAAAAGTTACATTTCTG
TTAAACGTAAGCGTCTAGTTCACATTTCATCTCCATAATCGTCACTAAAA
TTCCACTATTGAAAACCAGTGAAAACAAGTTGTAAAAAGCCATTGCTTTG
CATTATCCAGATAGTAATTgcctgattttttttgtttgaagcaGACAATA
ATTTTCTGCCCTGAAGCCATTTGCCAATCGGAAGATCATTTGATGAGGGT
TGCCCGGGCCTCTTGCCGCACATTGAACGTGCAAGTTCGTAAATGGGAAT
ATTTTAAATAAAACCAAACCATCATTAAAGATATAGTTTCAAAATTGACC
AAGAAGTCGATCCAGATAGTAATTGCctgatttcttttgtttgaagcAGA
CAATAATTTTCTGCCTTGAAACCATTTGCCAATCTGTTTTCCAGTAACTG
CATATGATTTCTTTCGTTTTAACATAAATTTTCTGCTCTGAAGCCATTTG
ccatattattttcaagcatcTGTCTGGTTTCGCTCATGCTAAAGACATAA
TTTTCTGCCCTGAAGCCATTTGCCAATCGGAAGATCATTTGATGAGGGTT
GCCCGGGCCTCTTGCCGCACATTGAACGTGCAAATTGACCAAGAAGTCGA
TCGTCTTGTAAAAAGCCATTGCTTTGCATTATGTATCCAGACAGTAGCTT
ATACTTACATGATGGTTGGCTCTGAAACCATTTGCTATATTCCCCTCTAA
CATTTGCCTGTGGTTACGTTCATGATCCTGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010745XLOC_010745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019148-exon-sc0000319-1491911889:312014..312796TCONS_00019148-exon-sc0000319-1491911889:312014..312796Clytia hemisphaericaexon
TCONS_00019148-exon-sc0000319-1510915933:312014..312796TCONS_00019148-exon-sc0000319-1510915933:312014..312796Clytia hemisphaericaexon
TCONS_00019148-exon-sc0000319-1575043694:312014..312796TCONS_00019148-exon-sc0000319-1575043694:312014..312796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:312014..312796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123022	0.39766	1.70824	2.74585	0.311084	0.389781	0.0794638	0.148786	0	0.0645149	0	0	0.306318	0.14422	0	0.112992	0.139197	0	0.519684	0.550029	0.0597594	0.174891	0.141735	0.168616	0.132721	0.476782	0	0	0.111311	0.0830126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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