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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019163 ID=TCONS_00019163|Name=TCONS_00019163|organism=Clytia hemisphaerica|type=transcript|length=3851bpRun BLAST on NCBI protein sequence of TCONS_00019163-protein >TCONS_00019163-protein ID=TCONS_00019163-protein|Name=TCONS_00019163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp MNKQPAFLLPVEKCQLCLKKKHQFTCNVCVLTGNFSKSIRSLENYEEGGGRun BLAST on NCBI transcript from alignment at sc0000320:87249..106560+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019163 ID=TCONS_00019163|Name=TCONS_00019163|organism=Clytia hemisphaerica|type=transcript|length=19312bp|location=Sequence derived from alignment at sc0000320:87249..106560+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000320:87249..106560+ >TCONS_00019163 ID=TCONS_00019163|Name=TCONS_00019163|organism=Clytia hemisphaerica|type=CDS|length=17568bp|location=Sequence derived from alignment at sc0000320:87249..106560+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019163 vs. Swiss-Prot (Human)
Match: BAKOR (Beclin 1-associated autophagy-related key regulator OS=Homo sapiens GN=ATG14 PE=1 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.252e-38 Identity = 125/459 (27.23%), Postives = 219/459 (47.71%), Query Frame = 2
Query: 194 AFLLPVEKCQLCLKKKHQFTCNVCVLTGNFSKSIRSLENYEEGGGRNSYLSSQQTSFNNKQKRLHIVRNVKNEFQERLDEKLEKQANYNKKVTQLIILRNRIETLKCVLQESKSQNEREKEENNKFAESLAEKQKLVKRLRLKSDKLKNDYHLQEKKIKLHRYKTKL-----------ESKRESLKEIRISHINALVNNIFPISERTIFPTLGTSPRGISKYNADIGSDVVSESLSKSPEFDLEEATRTIHVEGKWISLKSEERETTIVDAG----MPNSGDFIKYFVWLKSYRSEPRSTESNIILHDNEILNVPASLIYSAQLTDGMAFFLSINLPHQIEYINFGLLQVSRKKLVRTIDRLAENVMYLCCSQGIDENQLEPNAILKNLKTMIETRPESLGRTIPF-------EAIEFEPNECPFDSDSSAEELNFDTDSDSADGNTEEWDRLHDLPEP 1504
+ VE+C LC + + TC CV +G+F Y +G R ++ +K++RL +++ + EFQ+ + + +E + ++ +++ + RIE LK + + + E+ E K E + QKL R + QEKK K+ R+ KL S E L +R SHI L + IFPI E + T R + +++ S + S ++SK L EA RT ++ G+W+ +T+I G +PN+GD+ Y+ W++ E ++T+ + N + A+L Y+ QL + ++ L +NLP ++ F +S++K R + +L N++YLC SQ ++ +QL+P L+NL ++ E LGR+ PF E++EF +SD S +E D ++D +W+ +LP P
Sbjct: 35 GLYVAVERCPLCNTTRRRLTCAKCVQSGDFV--------YFDGRDRERFI--------DKKERLSRLKSKQEEFQKEVLKAMEGKWITDQLRWKIMSCKMRIEQLKQTICKGNEEMEKNSEGLLKTKE---KNQKLYSRAQ----------RHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLANLRRSHILELTSVIFPIEE------VKTGVRDPADVSSESDSAMTSSTVSK-----LAEARRTTYLSGRWV-CDDHNGDTSISITGPWISLPNNGDYSAYYSWVE----EKKTTQGPDMEQSNPAYTISAALCYATQLVNILSHILDVNLPKKLCNSEFCGENLSKQKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGRSGPFEVRADLEESMEFVDPGVAGESDESGDERVSDEETDLG----TDWE---NLPSP 441 The following BLAST results are available for this feature:
BLAST of TCONS_00019163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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