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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019164 ID=TCONS_00019164|Name=TCONS_00019164|organism=Clytia hemisphaerica|type=transcript|length=2380bp
TATAAAATCAAACGTAATTAGCGTAAGGGCTTTTCTATCTTACAATggat
ttcttttatttatttattcgaTGTTGAAATATATACATGGTATATacaaa
gttgaaaaaaacaatCTATTTATCAGCAGATATAAAGTAAGCTAGCATTA
CACTTACACAAACAGTGTTCACAAGTCTTTTATAGAAGGCATATAACTTA
GTTTACTTTGAATGATCGgcaaacaaactaatttcttttGTGAGGATTTA
TTCAGAAACTATTTCTAACTTAAATAGACTTGAAGAGCCCTAACGAGGCT
TCAGTTGACTCGGAGTCTAACATAGCGACGACTGGCTTGTAAGAAAGCAT
ACTTTTTTGATCATTATTATTGAACAGACTTCTTGGCAAATATGAGTGGA
TTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTTTCAGGAGAA
AACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACGAACACAGAC
ACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAAACGCCGTGC
AAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCTTTTACATCA
ACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAATGTCCAATA
TCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtgtgcatgttg
tgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttcacgatttca
aaaacattcattGAGCATCAAAAATATCCACCCAAAGCATTGCTCTAGAG
atTACGGCAAACTACCCTCACTAACTTTCATCGGGTACGCACGAAAATAC
GGCGGTCATTCTCCACACGGGAAGTTGCCGTATCCTACTTCGACACCGGG
TAGCAACAATAACGGAAACAACCCTTCAAGTAACGGATTCCGCCGACGAC
ACCGGACCATCTTTTCTGACGAACAATTGGAGTTGATGGAGAGAATGTTC
GATCGGACACATTATCCAGATGTGATGGTGAGAGAAGAAATCGCAAGAAT
GATCAACTTGACCGAAGAAAAAGTTGAGGTTTGGTTCAAAAATCGTAGAG
CAAGAtggagaaaacaaaagaaagatacGCACAATTCATCACCGAAAGGA
CTTCGAGGAGGGATTAGCTCTGCGTTAAACCACGGAAAGTTGACGATGAA
TAGTAGCTACGTCATTGATAGTGAAGGTTCAATATCTCCTTGTTCACCCA
TACGAGAAATCGAAAAGGCCTTAAGCAAGACTCCTCATTGATTGACAAGC
GAAAAGAAGCTTTGAGGATGCGGAGATTTTGAGGAGGAAGAATGGTGATC
GGCGACAGGTCAGGTCAGACCAATTATGACTTTCTTCCGATTGAATAATG
GGACCAATGTCTTTGCTGGATTCGCCTGGTACAAAGGACGAAAAGCGAAA
ACCAAAAGCCGAGAAGGCGGCTCCTAACGATCACACTCATTTGCAAACAG
TCGTGCAAAATGGTGGCCTGAGACACCCATACGGGGAGGATgctcaaaaa
tcttttgaaaacaatgaaTATTCGGAAGCAAATTAATGAGAAGATTCCAG
CAGTGACAACAAGAAGAATCCCAAAAGGAAACAGAcaagtcaaaatcaaa
tttgagtGGGGAttaatctattttttttaaatggtgtATTCTTTCAATGA
TAAGAATTATAATTTCTCATTattttaaactagacaaaaagTCTCCCTCG
TCGATTAGACCCATGTTGAGTTATATTTTGGAAATTCTCTTCTCTATTAT
GTGTTCTTGGAGTAGGAAGCTTTTGCAAAAGTAGCTCCAAAGTTATCTTG
GAAAAGAATCTCTTTCAGATTACAATAATATGTGATTAGTTTTGAGCTGT
GTTTGCACAGTATGATTCCACTCAGTGTTTTAAAGTCCCAGCGAGATTTT
ACTTTCCATTAGGAAATCTTTACTAAAGAACTTAAAGACATTTCGCTAAT
CCAATTTCATCGTCGGCAGCTACACAGCGAGATTTTTAAAAGGGTCTAGG
AATATTGGAGtagataattatttttaaaaatttgtaaatatttttgagaa
aacaaaattattgaTGGATGATAACGAGTTTAAAGAATAATATATAATTT
AACTCCTCTGGTAGGAGACATATTTTAGGCTTTTCCAAGTTATGAAAGGC
Tgtaatgaaaattgtaaaaagttcttaaattgaaaagacaaaaacaaaat
attaaatCCTTCGTATTCGGACAAGCAAgctctttttttatcaaaatctt
aATTCGGAAACAGGCCATGCTACGGAAATTCAAATCTAATACAATAGCCT
GTAAGGTCGTTCCAGTTTAGTACTCTCCAT Run BLAST on NCBI protein sequence of Gsc Goosecoid protein >TCONS_00019164-protein ID=TCONS_00019164-protein|Name=Gsc Goosecoid protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MSGFLIENLLKDDGRRFQEKTDYTLREGSESIDEHRHSPPFDLTPSPVRE
TPCKSRHVYQEEDFVHLLHQHHRNDHVSIRGAKMSNICEKDLSCKCEICV
CMLCYEWHSTWKRSNLSRFQKHSLSIKNIHPKHCSRDYGKLPSLTFIGYA
RKYGGHSPHGKLPYPTSTPGSNNNGNNPSSNGFRRRHRTIFSDEQLELME
RMFDRTHYPDVMVREEIARMINLTEEKVEVWFKNRRARWRKQKKDTHNSS
PKGLRGGISSALNHGKLTMNSSYVIDSEGSISPCSPIREIEKALSKTPH Run BLAST on NCBI transcript from alignment at sc0000320:161287..165787+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019164 ID=TCONS_00019164|Name=TCONS_00019164|organism=Clytia hemisphaerica|type=transcript|length=4501bp|location=Sequence derived from alignment at sc0000320:161287..165787+ (Clytia hemisphaerica)
TATAAAATCAAACGTAATTAGCGTAAGGGCTTTTCTATCTTACAATggat
ttcttttatttatttattcgaTGTTGAAATATATACATGGTATATacaaa
gttgaaaaaaacaatCTATTTATCAGCAGATATAAAGTAAGCTAGCATTA
CACTTACACAAACAGTGTTCACAAGTCTTTTATAGAAGGCATATAACTTA
GTTTACTTTGAATGATCGgcaaacaaactaatttcttttGTGAGGATTTA
TTCAGAAACTATTTCTAACTTAAATAGACTTGAAGAGCCCTAACGAGGCT
TCAGTTGACTCGGAGTCTAACATAGCGACGACTGGCTTGTAAGAAAGCAT
ACTTTTTTGATCATTATTATTGAACAGACTTCTTGGCAAATATGAGTGGA
TTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTTTCAGGAGAA
AACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACGAACACAGAC
ACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAAACGCCGTGC
AAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCTTTTACATCA
ACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAATGTCCAATA
TCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtgtgcatgttg
tgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttcacgatttca
aaaacattcattGAGCATCAAAAATATCCACCCAAAGCATTGCTCTAGAG
GTAATaatgaattgatttttttgaaggaTTGAGAGAGCGACAGAGTCAGG
CACGTGATTTAGAAGAAGTGAAGTGGCTTACAGATAGCACACAACAGTAA
GGTGAATAAAATTATAATTNTGCAGATATAAAGTAAGCTAGCATTACACT
TACACAAACAGTGTTCACAAGTCTTTTATAGAAGGCATATAACTTAGTTT
ACTTTGAATGATCGgcaaacaaactaatttcttttGTGAGGATTTATTCA
GAAACTATTTCTAACTTAAATAGACTTGAAGAGCCCTAACGAGGCTTCAG
TTGACTCGGAGTCTAACATAGCGACGACTGGCTTGTAAGAAAGCATACTT
TTTTGATCATTATTATTGAACAGACTTCTTGGCAAATATGAGTGGATTTT
TGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTTTCAGGAGAAAACG
GATTACACATTGCGTGAAGGTTCAGAATCAATAGACGAACACAGACACAG
TCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAAACGCCGTGCAAAT
CACGACACGTTTACCAAGAAGAAGATTTCGTGCATCTTTTACATCAACAT
CATCGTAACGACCATGTGTCCATACGGGGCGCCAAAATGTCCAATATCTG
TGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtgtgcatgttgtgtt
aTGAATGGCATTCGACCTGGAAAAGATCCAACCtttcacgatttcaaaaa
cattcattGAGCATCAAAAATATCCACCCAAAGCATTGCTCTAGAGGTAA
TaatgaattgatttttttgaaggaTTGAGAGAGCGACAGAGTCAGGCACG
TGATTTAGAAGAAGTGAAGTGGCTTACAGATAGCACACAACAGTAAGGTG
AATAAAAttataattcattttttttctagatTACGGCAAACTACCCTCAC
TAACTTTCATCGGGTACGCACGAAAATACGGCGGTCATTCTCCACACGGG
AAGTTGCCGTATCCTACTTCGACACCGGGTAGCAACAATAACGGAAACAA
CCCTTCAAGTAACGGATTCCGCCGACGACACCGGACCATCTTTTCTGACG
AACAATTGGAGTTGATGGAGAGAATGTTCGATCGGACACATTATCCAGAT
GTGATGGTGAGAGAAGAAATCGCAAGAATGATCAACTTGACCGAAGAAAA
AGTTGAGGTAAGAACCTAACACTCTCTTGCGAAAAAAATTACGTCTATCC
ATGCCTGAAACGAACTCAATAGAAAATAATcttacaaattcaaaaaaagt
taacaaaGTGCTAGTCTGTAGACGAAAACAGTTTCATATTATGGCTCAGc
taaaatgtctttaaaaagtTAGCTGTTTGGAAGGCACTGGCTAACGAAGT
CCTTATTCTTTCCATAGGAATATTTCGCTTTTGCGCAAATTTATCATATT
AACGAAAAAGGATGATCTGAGTAAAGCGCAAATGCAAAAACCTCGATCGA
TCTAGTCCGCTTATTAGTCTCAACATGTGCTTGTCATAAATCAAATAATT
AGAAAAGTAAAAGAGATCTATCAAGCGCAAATTTGAAATAGGATCAACCC
ATAAAACAGTGTCGGAATTTTGAGAGGCTTTTAATTTCATAAACAGGGGA
AGCTTGAAGAATTATCCCTTCTTTTAAAAATGCTCTTATTATCACCATCT
TGTTGTTTTAGCTTAATCAATATAACCCGACAAAACAAACTAACACTTCC
CGCAAAACCCTTCTTCTTTTGAGGACCAAAATGGgaccaaaaccaaaaaa
taattGAAGGCATTTTGTATGAaaagaattcttttcaaaagaagctCGTG
CCGTAAATTatcaaaagaatcaaaaagctaaaattgaaaaggttacaatt
atcaaaaagaataaaagaagaGGAAACTTTGAGGCTTAAgccttattttt
cttttgagctTTCCCATTTCTAATCTAATCAAGGGTATTCTACACTCGAG
AAAAAAGGGTGATTCTCATTGAGGCAAAATTCAATAGATAAAAAGATCTA
AAAGGTTTAAATACTTAaaagcaacaacaacaaaaaataaatagaatgaA
CCTGTATAAAAGATTGGGTCCAGCTTTTTATCCTGAAATGGGGCGGTGCA
GGAAAAGAAAAGGGTTAAAACAAAACCGCACCTATGCTATAtcattttac
aaaaatgaaattcaaaatacATGACGAACATCAAAGCCCTGACCAAGCCC
TGACCGTTACACTCCTAATGCAAAATCatttaataacttttttcccaaaa
taGCACTGCTCATGCTAAAAGGTTCATCACTGTGTGGTATAATCAAGGCC
TTAACTTACGCAGATTCAATAAATAGGCTATTCTTCTTTGACTTCACAGG
TTTGGTTCAAAAATCGTAGAGCAAGAtggagaaaacaaaagaaagatacG
CACAATTCATCACCGAAAGGACTTCGAGGAGGGATTAGCTCTGCGTTAAA
CCACGGAAAGTTGACGATGAATAGTAGCTACGTCATTGATAGTGAAGGTT
CAATATCTCCTTGTTCACCCATACGAGAAATCGAAAAGGCCTTAAGCAAG
ACTCCTCATTGATTGACAAGCGAAAAGAAGCTTTGAGGATGCGGAGATTT
TGAGGAGGAAGAATGGTGATCGGCGACAGGTCAGGTCAGACCAATTATGA
CTTTCTTCCGATTGAATAATGGGACCAATGTCTTTGCTGGATTCGCCTGG
TACAAAGGACGAAAAGCGAAAACCAAAAGCCGAGAAGGCGGCTCCTAACG
ATCACACTCATTTGCAAACAGTCGTGCAAAATGGTGGCCTGAGACACCCA
TACGGGGAGGATgctcaaaaatcttttgaaaacaatgaaTATTCGGAAGC
AAATTAATGAGAAGATTCCAGCAGTGACAACAAGAAGAATCCCAAAAGGA
AACAGAcaagtcaaaatcaaatttgagtGGGGAttaatctatttttttta
aatggtgtATTCTTTCAATGATAAGAATTATAATTTCTCATTattttaaa
ctagacaaaaagTCTCCCTCGTCGATTAGACCCATGTTGAGTTATATTTT
GGAAATTCTCTTCTCTATTATGTGTTCTTGGAGTAGGAAGCTTTTGCAAA
AGTAGCTCCAAAGTTATCTTGGAAAAGAATCTCTTTCAGATTACAATAAT
ATGTGATTAGTTTTGAGCTGTGTTTGCACAGTATGATTCCACTCAGTGTT
TTAAAGTCCCAGCGAGATTTTACTTTCCATTAGGAAATCTTTACTAAAGA
ACTTAAAGACATTTCGCTAATCCAATTTCATCGTCGGCAGCTACACAGCG
AGATTTTTAAAAGGGTCTAGGAATATTGGAGtagataattatttttaaaa
atttgtaaatatttttgagaaaacaaaattattgaTGGATGATAACGAGT
TTAAAGAATAATATATAATTTAACTCCTCTGGTAGGAGACATATTTTAGG
CTTTTCCAAGTTATGAAAGGCTgtaatgaaaattgtaaaaagttcttaaa
ttgaaaagacaaaaacaaaatattaaatCCTTCGTATTCGGACAAGCAAg
ctctttttttatcaaaatcttaATTCGGAAACAGGCCATGCTACGGAAAT
TCAAATCTAATACAATAGCCTGTAAGGTCGTTCCAGTTTAGTACTCTCCA
T Coding sequence (CDS) from alignment at sc0000320:161287..165787+ >TCONS_00019164 ID=TCONS_00019164|Name=TCONS_00019164|organism=Clytia hemisphaerica|type=CDS|length=3600bp|location=Sequence derived from alignment at sc0000320:161287..165787+ (Clytia hemisphaerica)
ATGAGTGGATTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTT
TCAGGAGAAAACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACG
AACACAGACACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAA
ACGCCGTGCAAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCT
TTTACATCAACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAA
TGTCCAATATCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtg
tgcatgttgtgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttc
acgatttcaaaaacattcattGAGCATCAAAAATATCCACCCAAAGCATT
GCTCTAGAGatTACGGCAAACTACCCTCACTAACTTTCATCGGGTACGCA
CGAAAATACGGCGGTCATTCTCCACACGGGAAGTTGCCGTATCCTACTTC
GACACCGGGTAGCAACAATAACGGAAACAACCCTTCAAGTAACGGATTCC
GCCGACGACACCGGACCATCTTTTCTGACGAACAATTGGAGTTGATGGAG
AGAATGTTCGATCGGACACATTATCCAGATGTGATGGTGAGAGAAGAAAT
CGCAAGAATGATCAACTTGACCGAAGAAAAAGTTGAGGTTTGGTTCAAAA
ATCGTAGAGCAAGAtggagaaaacaaaagaaagatacGCACAATTCATCA
CCGAAAGGACTTCGAGGAGGGATTAGCTCTGCGTTAAACCACGGAAAGTT
GACGATGAATAGTAGCTACGTCATTGATAGTGAAGGTTCAATATCTCCTT
GTTCACCCATACGAGAAATCGAAAAGGCCTTAAGCAAGACTCCTCATTGA
ATGAGTGGATTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTT
TCAGGAGAAAACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACG
AACACAGACACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAA
ACGCCGTGCAAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCT
TTTACATCAACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAA
TGTCCAATATCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtg
tgcatgttgtgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttc
acgatttcaaaaacattcattGAGCATCAAAAATATCCACCCAAAGCATT
GCTCTAGAGatTACGGCAAACTACCCTCACTAACTTTCATCGGGTACGCA
CGAAAATACGGCGGTCATTCTCCACACGGGAAGTTGCCGTATCCTACTTC
GACACCGGGTAGCAACAATAACGGAAACAACCCTTCAAGTAACGGATTCC
GCCGACGACACCGGACCATCTTTTCTGACGAACAATTGGAGTTGATGGAG
AGAATGTTCGATCGGACACATTATCCAGATGTGATGGTGAGAGAAGAAAT
CGCAAGAATGATCAACTTGACCGAAGAAAAAGTTGAGGTTTGGTTCAAAA
ATCGTAGAGCAAGAtggagaaaacaaaagaaagatacGCACAATTCATCA
CCGAAAGGACTTCGAGGAGGGATTAGCTCTGCGTTAAACCACGGAAAGTT
GACGATGAATAGTAGCTACGTCATTGATAGTGAAGGTTCAATATCTCCTT
GTTCACCCATACGAGAAATCGAAAAGGCCTTAAGCAAGACTCCTCATTGA
ATGAGTGGATTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTT
TCAGGAGAAAACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACG
AACACAGACACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAA
ACGCCGTGCAAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCT
TTTACATCAACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAA
TGTCCAATATCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtg
tgcatgttgtgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttc
acgatttcaaaaacattcattGAGCATCAAAAATATCCACCCAAAGCATT
GCTCTAGAGatTACGGCAAACTACCCTCACTAACTTTCATCGGGTACGCA
CGAAAATACGGCGGTCATTCTCCACACGGGAAGTTGCCGTATCCTACTTC
GACACCGGGTAGCAACAATAACGGAAACAACCCTTCAAGTAACGGATTCC
GCCGACGACACCGGACCATCTTTTCTGACGAACAATTGGAGTTGATGGAG
AGAATGTTCGATCGGACACATTATCCAGATGTGATGGTGAGAGAAGAAAT
CGCAAGAATGATCAACTTGACCGAAGAAAAAGTTGAGGTTTGGTTCAAAA
ATCGTAGAGCAAGAtggagaaaacaaaagaaagatacGCACAATTCATCA
CCGAAAGGACTTCGAGGAGGGATTAGCTCTGCGTTAAACCACGGAAAGTT
GACGATGAATAGTAGCTACGTCATTGATAGTGAAGGTTCAATATCTCCTT
GTTCACCCATACGAGAAATCGAAAAGGCCTTAAGCAAGACTCCTCATTGA
ATGAGTGGATTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTT
TCAGGAGAAAACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACG
AACACAGACACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAA
ACGCCGTGCAAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCT
TTTACATCAACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAA
TGTCCAATATCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtg
tgcatgttgtgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttc
acgatttcaaaaacattcattGAGCATCAAAAATATCCACCCAAAGCATT
GCTCTAGAGatTACGGCAAACTACCCTCACTAACTTTCATCGGGTACGCA
CGAAAATACGGCGGTCATTCTCCACACGGGAAGTTGCCGTATCCTACTTC
GACACCGGGTAGCAACAATAACGGAAACAACCCTTCAAGTAACGGATTCC
GCCGACGACACCGGACCATCTTTTCTGACGAACAATTGGAGTTGATGGAG
AGAATGTTCGATCGGACACATTATCCAGATGTGATGGTGAGAGAAGAAAT
CGCAAGAATGATCAACTTGACCGAAGAAAAAGTTGAGGTTTGGTTCAAAA
ATCGTAGAGCAAGAtggagaaaacaaaagaaagatacGCACAATTCATCA
CCGAAAGGACTTCGAGGAGGGATTAGCTCTGCGTTAAACCACGGAAAGTT
GACGATGAATAGTAGCTACGTCATTGATAGTGAAGGTTCAATATCTCCTT
GTTCACCCATACGAGAAATCGAAAAGGCCTTAAGCAAGACTCCTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019164-exon-sc0000320-1491911889:161287..162041 | TCONS_00019164-exon-sc0000320-1491911889:161287..162041 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1510915933:161287..162041 | TCONS_00019164-exon-sc0000320-1510915933:161287..162041 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1575043694:161287..162041 | TCONS_00019164-exon-sc0000320-1575043694:161287..162041 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1491911889:162838..162882 | TCONS_00019164-exon-sc0000320-1491911889:162838..162882 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1510915933:162838..162882 | TCONS_00019164-exon-sc0000320-1510915933:162838..162882 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1575043694:162838..162882 | TCONS_00019164-exon-sc0000320-1575043694:162838..162882 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1491911889:163016..163293 | TCONS_00019164-exon-sc0000320-1491911889:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1510915933:163016..163293 | TCONS_00019164-exon-sc0000320-1510915933:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1575043694:163016..163293 | TCONS_00019164-exon-sc0000320-1575043694:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1491911889:164486..165787 | TCONS_00019164-exon-sc0000320-1491911889:164486..165787 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1510915933:164486..165787 | TCONS_00019164-exon-sc0000320-1510915933:164486..165787 | Clytia hemisphaerica | exon |
| TCONS_00019164-exon-sc0000320-1575043694:164486..165787 | TCONS_00019164-exon-sc0000320-1575043694:164486..165787 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:161287..165787 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00019164 vs. Swiss-Prot (Human)
Match: GSC (Homeobox protein goosecoid OS=Homo sapiens GN=GSC PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 9.241e-22 Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 2
Query: 941 RRRHRTIFSDEQLELMERMFDRTHYPDVMVREEIARMINLTEEKVEVWFKNRRARWRKQKK 1123
+RRHRTIF+DEQLE +E +F T YPDV RE++AR ++L EEKVEVWFKNRRA+WR+QK+
Sbjct: 160 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR 220
The following BLAST results are available for this feature:
|
