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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019166 ID=TCONS_00019166|Name=TCONS_00019166|organism=Clytia hemisphaerica|type=transcript|length=2235bp
CATTACACTTACACAAACAGTGTTCACAAGTCTTTTATAGAAGGCATATA
ACTTAGTTTACTTTGAATGATCGgcaaacaaactaatttcttttGTGAGG
ATTTATTCAGAAACTATTTCTAACTTAAATAGACTTGAAGAGCCCTAACG
AGGCTTCAGTTGACTCGGAGTCTAACATAGCGACGACTGGCTTGTAAGAA
AGCATACTTTTTTGATCATTATTATTGAACAGACTTCTTGGCAAATATGA
GTGGATTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTTTCAG
GAGAAAACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACGAACA
CAGACACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAAACGC
CGTGCAAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCTTTTA
CATCAACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAATGTC
CAATATCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtgtgca
tgttgtgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttcacga
tttcaaaaacattcattGAGCATCAAAAATATCCACCCAAAGCATTGCTC
TAGAGatTACGGCAAACTACCCTCACTAACTTTCATCGGGTACGCACGAA
AATACGGCGGTCATTCTCCACACGGGAAGTTGCCGTATCCTACTTCGACA
CCGGGTAGCAACAATAACGGAAACAACCCTTCAAGTAACGGATTCCGCCG
ACGACACCGGACCATCTTTTCTGACGAACAATTGGAGTTGATGGAGAGAA
TGTTCGATCGGACACATTATCCAGATGTGATGGTGAGAGAAGAAATCGCA
AGAATGATCAACTTGACCGAAGAAAAAGTTGAGGTTTGGTTCAAAAATCG
TAGAGCAAGAtggagaaaacaaaagaaagatacGCACAATTCATCACCGA
AAGGACTTCGAGGAGGGATTAGCTCTGCGTTAAACCACGGAAAGTTGACG
ATGAATAGTAGCTACGTCATTGATAGTGAAGGTTCAATATCTCCTTGTTC
ACCCATACGAGAAATCGAAAAGGCCTTAAGCAAGACTCCTCATTGATTGA
CAAGCGAAAAGAAGCTTTGAGGATGCGGAGATTTTGAGGAGGAAGAATGG
TGATCGGCGACAGGTCAGGTCAGACCAATTATGACTTTCTTCCGATTGAA
TAATGGGACCAATGTCTTTGCTGGATTCGCCTGGTACAAAGGACGAAAAG
CGAAAACCAAAAGCCGAGAAGGCGGCTCCTAACGATCACACTCATTTGCA
AACAGTCGTGCAAAATGGTGGCCTGAGACACCCATACGGGGAGGATgctc
aaaaatcttttgaaaacaatgaaTATTCGGAAGCAAATTAATGAGAAGAT
TCCAGCAGTGACAACAAGAAGAATCCCAAAAGGAAACAGAcaagtcaaaa
tcaaatttgagtGGGGAttaatctattttttttaaatggtgtATTCTTTC
AATGATAAGAATTATAATTTCTCATTattttaaactagacaaaaagTCTC
CCTCGTCGATTAGACCCATGTTGAGTTATATTTTGGAAATTCTCTTCTCT
ATTATGTGTTCTTGGAGTAGGAAGCTTTTGCAAAAGTAGCTCCAAAGTTA
TCTTGGAAAAGAATCTCTTTCAGATTACAATAATATGTGATTAGTTTTGA
GCTGTGTTTGCACAGTATGATTCCACTCAGTGTTTTAAAGTCCCAGCGAG
ATTTTACTTTCCATTAGGAAATCTTTACTAAAGAACTTAAAGACATTTCG
CTAATCCAATTTCATCGTCGGCAGCTACACAGCGAGATTTTTAAAAGGGT
CTAGGAATATTGGAGtagataattatttttaaaaatttgtaaatattttt
gagaaaacaaaattattgaTGGATGATAACGAGTTTAAAGAATAATATAT
AATTTAACTCCTCTGGTAGGAGACATATTTTAGGCTTTTCCAAGTTATGA
AAGGCTgtaatgaaaattgtaaaaagttcttaaattgaaaagacaaaaac
aaaatattaaatCCTTCGTATTCGGACAAGCAAgctctttttttatcaaa
atcttaATTCGGAAACAGGCCATGCTACGGAAATTCAAATCTAATACAAT
AGCCTGTAAGGTCGTTCCAGTTTAGTACTCTCCAT Run BLAST on NCBI transcript from alignment at sc0000320:162228..165787+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019166 ID=TCONS_00019166|Name=TCONS_00019166|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at sc0000320:162228..165787+ (Clytia hemisphaerica)
CATTACACTTACACAAACAGTGTTCACAAGTCTTTTATAGAAGGCATATA
ACTTAGTTTACTTTGAATGATCGgcaaacaaactaatttcttttGTGAGG
ATTTATTCAGAAACTATTTCTAACTTAAATAGACTTGAAGAGCCCTAACG
AGGCTTCAGTTGACTCGGAGTCTAACATAGCGACGACTGGCTTGTAAGAA
AGCATACTTTTTTGATCATTATTATTGAACAGACTTCTTGGCAAATATGA
GTGGATTTTTGATCGAGAATTTACTGAAAGACGATGGAAGGAGGTTTCAG
GAGAAAACGGATTACACATTGCGTGAAGGTTCAGAATCAATAGACGAACA
CAGACACAGTCCACCGTTTGACTTGACGCCGTCACCCGTACGCGAAACGC
CGTGCAAATCACGACACGTTTACCAAGAAGAAGATTTCGTGCATCTTTTA
CATCAACATCATCGTAACGACCATGTGTCCATACGGGGCGCCAAAATGTC
CAATATCTGTGAAAAGGACCTTTCATGCAAATGTGAGATTtgtgtgtgca
tgttgtgttaTGAATGGCATTCGACCTGGAAAAGATCCAACCtttcacga
tttcaaaaacattcattGAGCATCAAAAATATCCACCCAAAGCATTGCTC
TAGAGGTAATaatgaattgatttttttgaaggaTTGAGAGAGCGACAGAG
TCAGGCACGTGATTTAGAAGAAGTGAAGTGGCTTACAGATAGCACACAAC
AGTAAGGTGAATAAAAttataattcattttttttctagatTACGGCAAAC
TACCCTCACTAACTTTCATCGGGTACGCACGAAAATACGGCGGTCATTCT
CCACACGGGAAGTTGCCGTATCCTACTTCGACACCGGGTAGCAACAATAA
CGGAAACAACCCTTCAAGTAACGGATTCCGCCGACGACACCGGACCATCT
TTTCTGACGAACAATTGGAGTTGATGGAGAGAATGTTCGATCGGACACAT
TATCCAGATGTGATGGTGAGAGAAGAAATCGCAAGAATGATCAACTTGAC
CGAAGAAAAAGTTGAGGTAAGAACCTAACACTCTCTTGCGAAAAAAATTA
CGTCTATCCATGCCTGAAACGAACTCAATAGAAAATAATcttacaaattc
aaaaaaagttaacaaaGTGCTAGTCTGTAGACGAAAACAGTTTCATATTA
TGGCTCAGctaaaatgtctttaaaaagtTAGCTGTTTGGAAGGCACTGGC
TAACGAAGTCCTTATTCTTTCCATAGGAATATTTCGCTTTTGCGCAAATT
TATCATATTAACGAAAAAGGATGATCTGAGTAAAGCGCAAATGCAAAAAC
CTCGATCGATCTAGTCCGCTTATTAGTCTCAACATGTGCTTGTCATAAAT
CAAATAATTAGAAAAGTAAAAGAGATCTATCAAGCGCAAATTTGAAATAG
GATCAACCCATAAAACAGTGTCGGAATTTTGAGAGGCTTTTAATTTCATA
AACAGGGGAAGCTTGAAGAATTATCCCTTCTTTTAAAAATGCTCTTATTA
TCACCATCTTGTTGTTTTAGCTTAATCAATATAACCCGACAAAACAAACT
AACACTTCCCGCAAAACCCTTCTTCTTTTGAGGACCAAAATGGgaccaaa
accaaaaaataattGAAGGCATTTTGTATGAaaagaattcttttcaaaag
aagctCGTGCCGTAAATTatcaaaagaatcaaaaagctaaaattgaaaag
gttacaattatcaaaaagaataaaagaagaGGAAACTTTGAGGCTTAAgc
cttatttttcttttgagctTTCCCATTTCTAATCTAATCAAGGGTATTCT
ACACTCGAGAAAAAAGGGTGATTCTCATTGAGGCAAAATTCAATAGATAA
AAAGATCTAAAAGGTTTAAATACTTAaaagcaacaacaacaaaaaataaa
tagaatgaACCTGTATAAAAGATTGGGTCCAGCTTTTTATCCTGAAATGG
GGCGGTGCAGGAAAAGAAAAGGGTTAAAACAAAACCGCACCTATGCTATA
tcattttacaaaaatgaaattcaaaatacATGACGAACATCAAAGCCCTG
ACCAAGCCCTGACCGTTACACTCCTAATGCAAAATCatttaataactttt
ttcccaaaataGCACTGCTCATGCTAAAAGGTTCATCACTGTGTGGTATA
ATCAAGGCCTTAACTTACGCAGATTCAATAAATAGGCTATTCTTCTTTGA
CTTCACAGGTTTGGTTCAAAAATCGTAGAGCAAGAtggagaaaacaaaag
aaagatacGCACAATTCATCACCGAAAGGACTTCGAGGAGGGATTAGCTC
TGCGTTAAACCACGGAAAGTTGACGATGAATAGTAGCTACGTCATTGATA
GTGAAGGTTCAATATCTCCTTGTTCACCCATACGAGAAATCGAAAAGGCC
TTAAGCAAGACTCCTCATTGATTGACAAGCGAAAAGAAGCTTTGAGGATG
CGGAGATTTTGAGGAGGAAGAATGGTGATCGGCGACAGGTCAGGTCAGAC
CAATTATGACTTTCTTCCGATTGAATAATGGGACCAATGTCTTTGCTGGA
TTCGCCTGGTACAAAGGACGAAAAGCGAAAACCAAAAGCCGAGAAGGCGG
CTCCTAACGATCACACTCATTTGCAAACAGTCGTGCAAAATGGTGGCCTG
AGACACCCATACGGGGAGGATgctcaaaaatcttttgaaaacaatgaaTA
TTCGGAAGCAAATTAATGAGAAGATTCCAGCAGTGACAACAAGAAGAATC
CCAAAAGGAAACAGAcaagtcaaaatcaaatttgagtGGGGAttaatcta
ttttttttaaatggtgtATTCTTTCAATGATAAGAATTATAATTTCTCAT
TattttaaactagacaaaaagTCTCCCTCGTCGATTAGACCCATGTTGAG
TTATATTTTGGAAATTCTCTTCTCTATTATGTGTTCTTGGAGTAGGAAGC
TTTTGCAAAAGTAGCTCCAAAGTTATCTTGGAAAAGAATCTCTTTCAGAT
TACAATAATATGTGATTAGTTTTGAGCTGTGTTTGCACAGTATGATTCCA
CTCAGTGTTTTAAAGTCCCAGCGAGATTTTACTTTCCATTAGGAAATCTT
TACTAAAGAACTTAAAGACATTTCGCTAATCCAATTTCATCGTCGGCAGC
TACACAGCGAGATTTTTAAAAGGGTCTAGGAATATTGGAGtagataatta
tttttaaaaatttgtaaatatttttgagaaaacaaaattattgaTGGATG
ATAACGAGTTTAAAGAATAATATATAATTTAACTCCTCTGGTAGGAGACA
TATTTTAGGCTTTTCCAAGTTATGAAAGGCTgtaatgaaaattgtaaaaa
gttcttaaattgaaaagacaaaaacaaaatattaaatCCTTCGTATTCGG
ACAAGCAAgctctttttttatcaaaatcttaATTCGGAAACAGGCCATGC
TACGGAAATTCAAATCTAATACAATAGCCTGTAAGGTCGTTCCAGTTTAG
TACTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019166-exon-sc0000320-1491911889:162228..162882 | TCONS_00019166-exon-sc0000320-1491911889:162228..162882 | Clytia hemisphaerica | exon |
| TCONS_00019166-exon-sc0000320-1510915933:162228..162882 | TCONS_00019166-exon-sc0000320-1510915933:162228..162882 | Clytia hemisphaerica | exon |
| TCONS_00019166-exon-sc0000320-1575043694:162228..162882 | TCONS_00019166-exon-sc0000320-1575043694:162228..162882 | Clytia hemisphaerica | exon |
| TCONS_00019166-exon-sc0000320-1491911889:163016..163293 | TCONS_00019166-exon-sc0000320-1491911889:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019166-exon-sc0000320-1510915933:163016..163293 | TCONS_00019166-exon-sc0000320-1510915933:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019166-exon-sc0000320-1575043694:163016..163293 | TCONS_00019166-exon-sc0000320-1575043694:163016..163293 | Clytia hemisphaerica | exon |
| TCONS_00019166-exon-sc0000320-1491911889:164486..165787 | TCONS_00019166-exon-sc0000320-1491911889:164486..165787 | Clytia hemisphaerica | exon |
| TCONS_00019166-exon-sc0000320-1510915933:164486..165787 | TCONS_00019166-exon-sc0000320-1510915933:164486..165787 | Clytia hemisphaerica | exon |
| TCONS_00019166-exon-sc0000320-1575043694:164486..165787 | TCONS_00019166-exon-sc0000320-1575043694:164486..165787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:162228..165787 + |
Blast
BLAST of TCONS_00019166 vs. Swiss-Prot (Human)
Match: GSC (Homeobox protein goosecoid OS=Homo sapiens GN=GSC PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 8.056e-22 Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1
Query: 796 RRRHRTIFSDEQLELMERMFDRTHYPDVMVREEIARMINLTEEKVEVWFKNRRARWRKQKK 978
+RRHRTIF+DEQLE +E +F T YPDV RE++AR ++L EEKVEVWFKNRRA+WR+QK+
Sbjct: 160 KRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR 220
The following BLAST results are available for this feature:
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