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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019167 ID=TCONS_00019167|Name=TCONS_00019167|organism=Clytia hemisphaerica|type=transcript|length=1485bp
AAATTCTCGCTTTCTTGTTAGGAGTGTGATGTCGTCCAATAGCTACAAAT
CTGCTTTTAGGCATGGGGGATAACATGAATTAGGGCGGTACCGGTAGATA
ATATGTAACAattccaaaacaaaagaatctttttctgaTAGAATTCAGAT
AAAATATGAACAATAACAATATGTATGGAGGAGAGAACAATTTGTGGATG
TACAATGCATCCGATACATCACCTCCGTCCAACACCACTTTGCAACCTGC
ATCAAGTCCATTACCAGATCACTTAGATATGACTCAATCAATCAACTTTC
TACAGAACATGGATTTGATGCAAAGAGGGATGTTTCCTGGTTCTCTATAC
AGTAATGGAAATAATGCTGCAGTCAACAATATGCAGTTACCGACACTCTC
ACCGCAACCATTACAGCGAAGAGATAGTTACAATCGAAATTTATTTGACT
ACCCTCCAACACAACAACATTCTACACAACAACCGCAATCTCAATCCAAT
CCTCAACAACTCTTTCAAAATCAATTACAGGAATCTAATAAACCGTGGGT
ATTGACCAACCCTCTGCAGCAAATAAACTCACAAAATTCTTCCCCTATTC
AAGGACAAAATGATTTCTCACCTCAACGATTAGCTGGCGACTCTTACCGA
AACAAAATGACCGATAAGGGGAATAATTATAGCCGTGGAGATCCTCCCAT
GTATCAACATCATGTGCAATCACAGAGTCAGGACAATACAATAAAAGGGT
TGATGGGAATAGTCAAACAGCCACCTCCTCCGCCACAATCACCACAAATC
GCAAGTAGTCCATCATACCAATTAACCGACCCTAATTTGAGTCAGGACGG
TAATAAAACGGATATGCATTTacaaactgaaaataaaaccCTACGGTCGG
ATCAAAGTAAATCACGTTTCATAAGGCAGCAACAAATGGCTGAAGATCGG
CACAAGAAAAATAACATTAATTCAGTTTTTTCTGCTGGTATTAAACACAA
GACAAATGGCAAAGTATCAAAAGTTTCAGCCAGTGTTAGAGAAACCAGAT
ATGATAATACAATGAGCGCGCTTAAGAAAGCAGGACTACTCGACATCACA
TTACAGACTGGTGAGCTATTGAAAAAGAATAATAGCCTTCAAAAAGACAT
TGATATGTTAGAAGAAATAGTAAAAGTGACCAAACatttaatgaataatg
aatGAGCAATTTATACCGATCAGATTTATCGAAGAAATTAAGGAATTTGC
TCATGTGGGAAAAAGCTGCTCGGTTAAAAGTAAGAATGAATGCTATGTAA
ATATTATGTTCTTTGTTGTTTTCCCAGTTCCTCAGAATTTCGGCTGGAAA
AAAATCTCTGGTCGAAACACATCTTTGCcctctacacgctttttttttta
taagaatagtgtactttggttgagggtgagcattattcttatttttctat
tgttctaaacaataggcctattgttttaaacccga Run BLAST on NCBI protein sequence of TCONS_00019167-protein >TCONS_00019167-protein ID=TCONS_00019167-protein|Name=TCONS_00019167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
MNNNNMYGGENNLWMYNASDTSPPSNTTLQPASSPLPDHLDMTQSINFLQ
NMDLMQRGMFPGSLYSNGNNAAVNNMQLPTLSPQPLQRRDSYNRNLFDYP
PTQQHSTQQPQSQSNPQQLFQNQLQESNKPWVLTNPLQQINSQNSSPIQG
QNDFSPQRLAGDSYRNKMTDKGNNYSRGDPPMYQHHVQSQSQDNTIKGLM
GIVKQPPPPPQSPQIASSPSYQLTDPNLSQDGNKTDMHLQTENKTLRSDQ
SKSRFIRQQQMAEDRHKKNNINSVFSAGIKHKTNGKVSKVSASVRETRYD
NTMSALKKAGLLDITLQTGELLKKNNSLQKDIDMLEEIVKVTKHLMNNE Run BLAST on NCBI transcript from alignment at sc0000320:207687..209829+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019167 ID=TCONS_00019167|Name=TCONS_00019167|organism=Clytia hemisphaerica|type=transcript|length=2143bp|location=Sequence derived from alignment at sc0000320:207687..209829+ (Clytia hemisphaerica)
AAATTCTCGCTTTCTTGTTAGGAGTGTGATGTCGTCCAATAGCTACAAAT
CTGCTTTTAGGCATGGGGGATAACATGAATTAGGGCGGTACCGGTAGATA
ATATGTAACAattccaaaacaaaagaatctttttctgaTAGAATTCAGAT
AAAATATGAACAATAACAATATGTATGGAGGAGAGAACAATTTGTGGATG
TACAATGCATCCGATACATCACCTCCGTCCAACACCACTTTGCAACCTGC
ATCAAGTCCATTACCAGATCACTTAGATATGACTCAATCAATCAAGTATG
TATAACATCAGACTTTAATCAAACTCCAAGCTTTAAACATCTGACCATAT
TATTGAATAACGTGAAAGTTTATTTCTGTAAAGAAATtattgtgtttttg
tttttctgaaattatCACCCATCACTTatatagttgacgctctctaattc
gaatcttttctaTTCTATTATTCAATGATGAGTTCCCGTTTTCCTTGCAA
ATTCACTTTTCAAATCCCTTGAATGTTTTTTGCTCTCTAATTTTGATTTC
TAACGGGTAAGTAGACCTTTATGACGGAGTTTTCTATacatcaaattttg
atttttttgctgttgAATGAAAGTTTTGGAATTCTATCCctcaaatgaaa
aaattatttgaattttttgatgtctaccaaaatcgatttatatATTGATA
TTTGTCTTAGTTCACCTTTATTACGTTTTCCTTCTATAATTCGATAATTC
CCCTGGAAAATCGTTATCTGTACTTTTATGTGAATGATTCTAACAATTAA
ATTTCTTAGGCCAATCAATCTTACTTGATTGACCTAAGAAATTTAATCGT
TAGAATCATTCCTTTCTATATTTTCTTGCCTCTTTACTTAAAACACCTGT
AATTTAGTCAATTTTGATTATGTTCAATAAGTTACATATCACCATATTTT
TAGCTTTCTACAGAACATGGATTTGATGCAAAGAGGGATGTTTCCTGGTT
CTCTATACAGTAATGGAAATAATGCTGCAGTCAACAATATGCAGTTACCG
ACACTCTCACCGCAACCATTACAGCGAAGAGATAGTTACAATCGAAATTT
ATTTGACTACCCTCCAACACAACAACATTCTACACAACAACCGCAATCTC
AATCCAATCCTCAACAACTCTTTCAAAATCAATTACAGGAATCTAATAAA
CCGTGGGTATTGACCAACCCTCTGCAGCAAATAAACTCACAAAATTCTTC
CCCTATTCAAGGACAAAATGATTTCTCACCTCAACGATTAGCTGGCGACT
CTTACCGAAACAAAATGACCGATAAGGGGAATAATTATAGCCGTGGAGAT
CCTCCCATGTATCAACATCATGTGCAATCACAGAGTCAGGACAATACAAT
AAAAGGGTTGATGGGAATAGTCAAACAGCCACCTCCTCCGCCACAATCAC
CACAAATCGCAAGTAGTCCATCATACCAATTAACCGACCCTAATTTGAGT
CAGGACGGTAATAAAACGGATATGCATTTacaaactgaaaataaaaccCT
ACGGTCGGATCAAAGTAAATCACGTTTCATAAGGCAGCAACAAATGGCTG
AAGATCGGCACAAGAAAAATAACATTAATTCAGTTTTTTCTGCTGGTATT
AAACACAAGACAAATGGCAAAGTATCAAAAGTTTCAGCCAGTGTTAGAGA
AACCAGATATGATAATACAATGAGCGCGCTTAAGAAAGCAGGACTACTCG
ACATCACATTACAGACTGGTGAGCTATTGAAAAAGAATAATAGCCTTCAA
AAAGACATTGATATGTTAGAAGAAATAGTAAAAGTGACCAAACatttaat
gaataatgaatGAGCAATTTATACCGATCAGATTTATCGAAGAAATTAAG
GAATTTGCTCATGTGGGAAAAAGCTGCTCGGTTAAAAGTAAGAATGAATG
CTATGTAAATATTATGTTCTTTGTTGTTTTCCCAGTTCCTCAGAATTTCG
GCTGGAAAAAAATCTCTGGTCGAAACACATCTTTGCcctctacacgcttt
tttttttataagaatagtgtactttggttgagggtgagcattattcttat
ttttctattgttctaaacaataggcctattgttttaaacccga Coding sequence (CDS) from alignment at sc0000320:207687..209829+ >TCONS_00019167 ID=TCONS_00019167|Name=TCONS_00019167|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0000320:207687..209829+ (Clytia hemisphaerica)
ATGAACAATAACAATATGTATGGAGGAGAGAACAATTTGTGGATGTACAA
TGCATCCGATACATCACCTCCGTCCAACACCACTTTGCAACCTGCATCAA
GTCCATTACCAGATCACTTAGATATGACTCAATCAATCAACTTTCTACAG
AACATGGATTTGATGCAAAGAGGGATGTTTCCTGGTTCTCTATACAGTAA
TGGAAATAATGCTGCAGTCAACAATATGCAGTTACCGACACTCTCACCGC
AACCATTACAGCGAAGAGATAGTTACAATCGAAATTTATTTGACTACCCT
CCAACACAACAACATTCTACACAACAACCGCAATCTCAATCCAATCCTCA
ACAACTCTTTCAAAATCAATTACAGGAATCTAATAAACCGTGGGTATTGA
CCAACCCTCTGCAGCAAATAAACTCACAAAATTCTTCCCCTATTCAAGGA
CAAAATGATTTCTCACCTCAACGATTAGCTGGCGACTCTTACCGAAACAA
AATGACCGATAAGGGGAATAATTATAGCCGTGGAGATCCTCCCATGTATC
AACATCATGTGCAATCACAGAGTCAGGACAATACAATAAAAGGGTTGATG
GGAATAGTCAAACAGCCACCTCCTCCGCCACAATCACCACAAATCGCAAG
TAGTCCATCATACCAATTAACCGACCCTAATTTGAGTCAGGACGGTAATA
AAACGGATATGCATTTacaaactgaaaataaaaccCTACGGTCGGATCAA
AGTAAATCACGTTTCATAAGGCAGCAACAAATGGCTGAAGATCGGCACAA
GAAAAATAACATTAATTCAGTTTTTTCTGCTGGTATTAAACACAAGACAA
ATGGCAAAGTATCAAAAGTTTCAGCCAGTGTTAGAGAAACCAGATATGAT
AATACAATGAGCGCGCTTAAGAAAGCAGGACTACTCGACATCACATTACA
GACTGGTGAGCTATTGAAAAAGAATAATAGCCTTCAAAAAGACATTGATA
TGTTAGAAGAAATAGTAAAAGTGACCAAACatttaatgaataatgaatGA
ATGAACAATAACAATATGTATGGAGGAGAGAACAATTTGTGGATGTACAA
TGCATCCGATACATCACCTCCGTCCAACACCACTTTGCAACCTGCATCAA
GTCCATTACCAGATCACTTAGATATGACTCAATCAATCAACTTTCTACAG
AACATGGATTTGATGCAAAGAGGGATGTTTCCTGGTTCTCTATACAGTAA
TGGAAATAATGCTGCAGTCAACAATATGCAGTTACCGACACTCTCACCGC
AACCATTACAGCGAAGAGATAGTTACAATCGAAATTTATTTGACTACCCT
CCAACACAACAACATTCTACACAACAACCGCAATCTCAATCCAATCCTCA
ACAACTCTTTCAAAATCAATTACAGGAATCTAATAAACCGTGGGTATTGA
CCAACCCTCTGCAGCAAATAAACTCACAAAATTCTTCCCCTATTCAAGGA
CAAAATGATTTCTCACCTCAACGATTAGCTGGCGACTCTTACCGAAACAA
AATGACCGATAAGGGGAATAATTATAGCCGTGGAGATCCTCCCATGTATC
AACATCATGTGCAATCACAGAGTCAGGACAATACAATAAAAGGGTTGATG
GGAATAGTCAAACAGCCACCTCCTCCGCCACAATCACCACAAATCGCAAG
TAGTCCATCATACCAATTAACCGACCCTAATTTGAGTCAGGACGGTAATA
AAACGGATATGCATTTacaaactgaaaataaaaccCTACGGTCGGATCAA
AGTAAATCACGTTTCATAAGGCAGCAACAAATGGCTGAAGATCGGCACAA
GAAAAATAACATTAATTCAGTTTTTTCTGCTGGTATTAAACACAAGACAA
ATGGCAAAGTATCAAAAGTTTCAGCCAGTGTTAGAGAAACCAGATATGAT
AATACAATGAGCGCGCTTAAGAAAGCAGGACTACTCGACATCACATTACA
GACTGGTGAGCTATTGAAAAAGAATAATAGCCTTCAAAAAGACATTGATA
TGTTAGAAGAAATAGTAAAAGTGACCAAACatttaatgaataatgaatGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019167-exon-sc0000320-1491911889:207687..207981 | TCONS_00019167-exon-sc0000320-1491911889:207687..207981 | Clytia hemisphaerica | exon |
| TCONS_00019167-exon-sc0000320-1510915933:207687..207981 | TCONS_00019167-exon-sc0000320-1510915933:207687..207981 | Clytia hemisphaerica | exon |
| TCONS_00019167-exon-sc0000320-1575043694:207687..207981 | TCONS_00019167-exon-sc0000320-1575043694:207687..207981 | Clytia hemisphaerica | exon |
| TCONS_00019167-exon-sc0000320-1491911889:208640..209829 | TCONS_00019167-exon-sc0000320-1491911889:208640..209829 | Clytia hemisphaerica | exon |
| TCONS_00019167-exon-sc0000320-1510915933:208640..209829 | TCONS_00019167-exon-sc0000320-1510915933:208640..209829 | Clytia hemisphaerica | exon |
| TCONS_00019167-exon-sc0000320-1575043694:208640..209829 | TCONS_00019167-exon-sc0000320-1575043694:208640..209829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:207687..209829 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031602 | CIPC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045892 | negative regulation of transcription, DNA-templated |
| GO:0042754 | negative regulation of circadian rhythm |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0042754 |
negative regulation of circadian rhythm |
| biological_process |
GO:0045892 |
negative regulation of transcription, DNA-templated |
Blast
The following BLAST results are available for this feature:
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