TCONS_00019178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019178
Unique NameTCONS_00019178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019178 ID=TCONS_00019178|Name=TCONS_00019178|organism=Clytia hemisphaerica|type=transcript|length=2148bp
aaaaaataggCGTTTAAATACACCCATTGTTCTATTTATTATTGTCATTT
AATCTATTCAATTTTACATGCATTGTTATTTTTAGAGAGCTATTGTTTGa
agaaaataatagaaaatcAACTTGATATAAATACAAGGTCGAAGACAATA
CATGACAGTATTCCAATCAACGACACGCTGTACATTGGTCAAACGAAGAT
ATTCATAATTACCAAAGAAGatataatttgaaaataatattttctgggAA
AGTGGGTGTGTTATGCCATCCAATGGACTTTAAACCTCCCGTTTTGAAAG
AATACATAAGCACATCACCTCCTTACATAAAACATCGAAGTACTCCCGAC
AGCGTCGAGAGCAACGATCCTAAACACACGATTATTCCTAACGACGACGA
CGCTCACCGACAATCACCGATCGTTTTCATCGACAACGAAGAGAAACATT
TCATTAAACGATCGCCGAAAGATTTTGTTGATCGACGACTTTTGCCAGGT
GCAGCACCGCTACCTTTGAAATACAAAGCAAGTAAAGCATATCATTTACA
AACCAGCACAATGGGTCCACTCTGGTGCACAAGCTCCTGTTGCTCAGATC
AACGAAAACCAACGGCAGCCGAATTCTTCTTCCCGCCATCAGGGCACGGA
CAGCGATACCCTTCAACTCACATGACTTCACCTGTACCATTGGTGTCGCC
CTACCCCTACCCTTCACCACCCTACCGTTCACCCAAAGAACCACAACCAC
TAACACCATCATCACCGACATCTTCAAACTCACCGATTCCATTCTCTCAA
GAACAGATCTCCAAAGTTTGCGAAACTTTAGAAGAATGTGGCGATATTGA
GCGACTATCCCGATTCTTATGGTCACTACCCACAACTCCCGATGTCCGTG
ATGTCATGAACTCAAGCGAAACAGTATTAAGAGCAAAAGCACTAGTAGCT
TTTCACAATCATCACTTTCATGAACTTTATTACATACTCGAACACTTTCG
GTTCGGTAAAAAATCACATGGTAAATTACAAGCCATGTGGCTTGAAGCAC
ATTACATGGAAGCCGAAAGGTTACGCGGTCGTCCGCTCGGACCAGTCGAT
AAGTATCGCGTTCGAAAGCGTTTTCCACTTCCACGAACCATTTGGGATGG
CGAACAAAAGACGCATTGTTTCAAAGAACGAACAAGAAAACTCTTAAGGG
AATTCTACTTGCAAGATCCTTACCCAAGTCCATCCAAGAAGCGCGACCTT
GCAGAAGCAACACACCTGACACCAACGCAAGTTGGTAATTGGTTCAAAAA
TCGACGACAAAGAGACAGAGCTGCTGCAGCCAAACACAAAAACCAACGTC
AAGAGATGAACATGCAACATTCCTTCGAAGATGACGATGATAGCGACACG
TTCGAAAACATCCTCGACAACGACGAACAAGATTCCGATTCCGAACATTC
TACCGACAACCGCAAAACTTTACAGTCCAATCCCGACAGCGACAAATTGA
AAGCTGTTATCAATCACCGATTATTCAGCGATCCAAATATGGTCAAGTCT
GTACCCATCTTGACACCCAAACCAACAACGAATTCGCACTCGACTTTTAT
GATGTCCGACATTCTAAAGAAAACCTCATCCACGCCACCTACCGCAAACA
TGGTCCTAAAGCCCTATCTACACAATAAACCAAACCTGTTTGTACACACG
AGGTAAATTGGTCGGTAGCAAatcaatgaatttttttaagaaatctgCTG
TGCAGATCTGTCATATattttttggattattttatgGATATGTATgatat
tattgaaaagaaaacttaaaattttaagaGATATGAAGGGATGTACATAa
tattgtttttactttttagttattttttagGCCTTAGGCATTTCCCCATT
ATCCCTTTCTATTAGACTATGTAATATTTTCTTCTCGGCGaagaaaccaa
aatttactAGACTcgccaaaataatttcaaagctaactttttcaggcatt
tttatttttcagttttattaGCTCTCTATTTTTACTTTGatggattttta
tcaaaatatatctaGAAAATGTATattaaaatgtaacttttatcaCTAGT
TCAttctttatcattgttttttcctGAATCTCAACTTGTAAatagaag
Run BLAST on NCBI

protein sequence of TCONS_00019178-protein

>TCONS_00019178-protein ID=TCONS_00019178-protein|Name=TCONS_00019178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MDFKPPVLKEYISTSPPYIKHRSTPDSVESNDPKHTIIPNDDDAHRQSPI
VFIDNEEKHFIKRSPKDFVDRRLLPGAAPLPLKYKASKAYHLQTSTMGPL
WCTSSCCSDQRKPTAAEFFFPPSGHGQRYPSTHMTSPVPLVSPYPYPSPP
YRSPKEPQPLTPSSPTSSNSPIPFSQEQISKVCETLEECGDIERLSRFLW
SLPTTPDVRDVMNSSETVLRAKALVAFHNHHFHELYYILEHFRFGKKSHG
KLQAMWLEAHYMEAERLRGRPLGPVDKYRVRKRFPLPRTIWDGEQKTHCF
KERTRKLLREFYLQDPYPSPSKKRDLAEATHLTPTQVGNWFKNRRQRDRA
AAAKHKNQRQEMNMQHSFEDDDDSDTFENILDNDEQDSDSEHSTDNRKTL
QSNPDSDKLKAVINHRLFSDPNMVKSVPILTPKPTTNSHSTFMMSDILKK
TSSTPPTANMVLKPYLHNKPNLFVHTR
Run BLAST on NCBI

transcript from alignment at sc0000320:121868..124995-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019178 ID=TCONS_00019178|Name=TCONS_00019178|organism=Clytia hemisphaerica|type=transcript|length=3128bp|location=Sequence derived from alignment at sc0000320:121868..124995- (Clytia hemisphaerica)
AAAAAATAGGCGTTTAAATACACCCATTGTTCTATTTATTATTGTCATTT
AATCTATTCAATTTTACATGCATTGTTATTTTTAGAGAGCTATTGTTTGA
AGAAAATAATAGAAAATCAACTTGATATAAATACAAGGTCGAAGACAATA
CATGACAGTATTCCAATCAACGACACGCTGTACATTGGTCAAACGAAGAT
ATTCATAATTACCAAAGAAGATATAATTTGAAAATAATATTTTCTGGGAA
AGTGGGTGTGTTATGCCATCCAATGGACTTTAAACCTCCCGTTTTGAAAG
AATACATAAGCACATCACCTCCTTACATAAAACATCGAAGTACTCCCGAC
AGCGTCGAGAGCAACGATCCTAAACACACGATTATTCCTAACGACGACGA
CGCTCACCGACAATCACCGATCGTTTTCATCGACAACGAAGAGAAACATT
TCATTAAACGATCGCCGAAAGATTTTGTTGATCGACGACTTTTGCCAGGT
GCAGCACCGCTACCTTTGAAATACAAAGCAAGTAAAGCATATCATTTACA
AACCAGCACAATGGGTCCACTCTGGTGCACAAGCTCCTGTTGCTCAGGTA
AGAAAACATATTTTGCGTTTTAGGGTAATATTCAAAGGACAAAATTTGTA
GGTGTTATTTTTCATTTATTTTGCTCATGTGGTAATCTGTCATGTCAAAA
CCACCGATAGGCAAACACACGAATCAAAATGAAATTATCCCAAGTAATTA
AGTAATTAGGAAAACCATCATGAAATTAGCAAGGATGCTTATCAGTATCA
AAAGTATAAAAAACAAAAACACACGAAGTACTGATCTGTGGTTTATTCTG
TAACTCAATGCTCCCGGCATGAGCTCAAAACGTTTTGGTTGTGTAATTTC
TATACTCATCTATTGTTATCGCAAAAGAAATACTCGAACTCAAAAGAAAC
TTTTATTGTTCTTTGAACTCAAAAATTCCGAAAAAAATTGTATAATTTTA
TAAAAGAGGGACAAATATTTCAAAATTTCATTCGCGTAACGGGTGGTCAG
TAAATTTTACAAGCTTCAAAGAGGCCGAAGGTATAAGTTAACGTAAACAA
GATATTTGATAGGGCTGGTATAATACTGATCGAAAACATTTGCTAACATT
AGACCAGACACTGAGCTAGCTTCCAATGTTTTGACAAACTCCAGGACACC
GTATACCTGTCTTAAAGCATTAGCAATGATATAACGTTCGAGAGGGGTAT
GTCGAGGCGCCATCTCACAGTTATTACGTCGACAGAAAAGATATCAATAT
TCTGAAGTGATATCTTGAAAAAGTAAAATTTGACATTTCTCTATTAGTGC
AATCTCATGACTGAACGTCGACCAGTCCACAACAAATATGCTTTCACAAA
AAAGAGTTCATCCTAAAGACTTGATGTTAAACTATGTTTCATTTCAACTT
CTAGATCAACGAAAACCAACGGCAGCCGAATTCTTCTTCCCGCCATCAGG
GCACGGACAGCGATACCCTTCAACTCACATGACTTCACCTGTACCATTGG
TGTCGCCCTACCCCTACCCTTCACCACCCTACCGTTCACCCAAAGAACCA
CAACCACTAACACCATCATCACCGACATCTTCAAACTCACCGATTCCATT
CTCTCAAGAACAGATCTCCAAAGTTTGCGAAACTTTAGAAGAATGTGGCG
ATATTGAGCGACTATCCCGATTCTTATGGTCACTACCCACAACTCCCGAT
GTCCGTGATGTCATGAACTCAAGCGAAACAGTATTAAGAGCAAAAGCACT
AGTAGCTTTTCACAATCATCACTTTCATGAACTTTATTACATACTCGAAC
ACTTTCGGTTCGGTAAAAAATCACATGGTAAATTACAAGCCATGTGGCTT
GAAGCACATTACATGGAAGCCGAAAGGTTACGCGGTCGTCCGCTCGGACC
AGTCGATAAGTATCGCGTTCGAAAGCGTTTTCCACTTCCACGAACCATTT
GGGATGGCGAACAAAAGACGCATTGTTTCAAAGAACGAACAAGAAAACTC
TTAAGGGAATTCTACTTGCAAGATCCTTACCCAAGTCCATCCAAGAAGCG
CGACCTTGCAGAAGCAACACACCTGACACCAACGCAAGTTGGTAATTGGT
TCAAAAATCGACGACAAAGAGACAGAGCTGCTGCAGCCAAACACAAGTAA
GTACCCTAAACCTCAACGACCTAAACTGTTTTTAAAATGTTTAGCTTAAC
TTATCAGTGGTCATTTTTTAATCTTTGTGGACAATTTTTAAACATTTCTT
TTTTTCATTTTCTGCACAGAAACCAACGTCAAGAGATGAACATGCAACAT
TCCTTCGAAGATGACGATGATAGCGACACGTTCGAAAACATCCTCGACAA
CGACGAACAAGATTCCGATTCCGAACATTCTACCGACAACCGCAAAACTT
TACAGTCCAATCCCGACAGCGACAAATTGAAAGCTGTTATCAATCACCGA
TTATTCAGCGATCCAAATATGGTCAAGTCTGTACCCATCTTGACACCCAA
ACCAACAACGAATTCGCACTCGACTTTTATGATGTCCGACATTCTAAAGA
AAACCTCATCCACGCCACCTACCGCAAACATGGTCCTAAAGCCCTATCTA
CACAATAAACCAAACCTGTTTGTACACACGAGGTAAATTGGTCGGTAGCA
AATCAATGAATTTTTTTAAGAAATCTGCTGTGCAGATCTGTCATATATTT
TTTGGATTATTTTATGGATATGTATGATATTATTGAAAAGAAAACTTAAA
ATTTTAAGAGATATGAAGGGATGTACATAATATTGTTTTTACTTTTTAGT
TATTTTTTAGGCCTTAGGCATTTCCCCATTATCCCTTTCTATTAGACTAT
GTAATATTTTCTTCTCGGCGAAGAAACCAAAATTTACTAGACTCGCCAAA
ATAATTTCAAAGCTAACTTTTTCAGGCATTTTTATTTTTCAGTTTTATTA
GCTCTCTATTTTTACTTTGATGGATTTTTATCAAAATATATCTAGAAAAT
GTATATTAAAATGTAACTTTTATCACTAGTTCATTCTTTATCATTGTTTT
TTCCTGAATCTCAACTTGTAAATAGAAG

Coding sequence (CDS) from alignment at sc0000320:121868..124995-

>TCONS_00019178 ID=TCONS_00019178|Name=TCONS_00019178|organism=Clytia hemisphaerica|type=CDS|length=4302bp|location=Sequence derived from alignment at sc0000320:121868..124995- (Clytia hemisphaerica)
AAACCAACGTCAAGAGATGAACATGCAACATTCCTTCGAAGATGACGATG
ATAGCGACACGTTCGAAAACATCCTCGACAACGACGAACAAGATTCCGAT
TCCGAACATTCTACCGACAACCGCAAAACTTTACAGTCCAATCCCGACAG
CGACAAATTGAAAGCTGTTATCAATCACCGATTATTCAGCGATCCAAATA
TGGTCAAGTCTGTACCCATCTTGACACCCAAACCAACAACGAATTCGCAC
TCGACTTTTATGATGTCCGACATTCTAAAGAAAACCTCATCCACGCCACC
TACCGCAAACATGGTCCTAAAGCCCTATCTACACAATAAACCAAACCTGT
TTGTACACACGAGGTAAATCAACGAAAACCAACGGCAGCCGAATTCTTCT
TCCCGCCATCAGGGCACGGACAGCGATACCCTTCAACTCACATGACTTCA
CCTGTACCATTGGTGTCGCCCTACCCCTACCCTTCACCACCCTACCGTTC
ACCCAAAGAACCACAACCACTAACACCATCATCACCGACATCTTCAAACT
CACCGATTCCATTCTCTCAAGAACAGATCTCCAAAGTTTGCGAAACTTTA
GAAGAATGTGGCGATATTGAGCGACTATCCCGATTCTTATGGTCACTACC
CACAACTCCCGATGTCCGTGATGTCATGAACTCAAGCGAAACAGTATTAA
GAGCAAAAGCACTAGTAGCTTTTCACAATCATCACTTTCATGAACTTTAT
TACATACTCGAACACTTTCGGTTCGGTAAAAAATCACATGGTAAATTACA
AGCCATGTGGCTTGAAGCACATTACATGGAAGCCGAAAGGTTACGCGGTC
GTCCGCTCGGACCAGTCGATAAGTATCGCGTTCGAAAGCGTTTTCCACTT
CCACGAACCATTTGGGATGGCGAACAAAAGACGCATTGTTTCAAAGAACG
AACAAGAAAACTCTTAAGGGAATTCTACTTGCAAGATCCTTACCCAAGTC
CATCCAAGAAGCGCGACCTTGCAGAAGCAACACACCTGACACCAACGCAA
GTTGGTAATTGGTTCAAAAATCGACGACAAAGAGACAGAGCTGCTGCAGC
CAAACACAAATGGACTTTAAACCTCCCGTTTTGAAAGAATACATAAGCAC
ATCACCTCCTTACATAAAACATCGAAGTACTCCCGACAGCGTCGAGAGCA
ACGATCCTAAACACACGATTATTCCTAACGACGACGACGCTCACCGACAA
TCACCGATCGTTTTCATCGACAACGAAGAGAAACATTTCATTAAACGATC
GCCGAAAGATTTTGTTGATCGACGACTTTTGCCAGGTGCAGCACCGCTAC
CTTTGAAATACAAAGCAAGTAAAGCATATCATTTACAAACCAGCACAATG
GGTCCACTCTGGTGCACAAGCTCCTGTTGCTCAGAAACCAACGTCAAGAG
ATGAACATGCAACATTCCTTCGAAGATGACGATGATAGCGACACGTTCGA
AAACATCCTCGACAACGACGAACAAGATTCCGATTCCGAACATTCTACCG
ACAACCGCAAAACTTTACAGTCCAATCCCGACAGCGACAAATTGAAAGCT
GTTATCAATCACCGATTATTCAGCGATCCAAATATGGTCAAGTCTGTACC
CATCTTGACACCCAAACCAACAACGAATTCGCACTCGACTTTTATGATGT
CCGACATTCTAAAGAAAACCTCATCCACGCCACCTACCGCAAACATGGTC
CTAAAGCCCTATCTACACAATAAACCAAACCTGTTTGTACACACGAGGTA
AATCAACGAAAACCAACGGCAGCCGAATTCTTCTTCCCGCCATCAGGGCA
CGGACAGCGATACCCTTCAACTCACATGACTTCACCTGTACCATTGGTGT
CGCCCTACCCCTACCCTTCACCACCCTACCGTTCACCCAAAGAACCACAA
CCACTAACACCATCATCACCGACATCTTCAAACTCACCGATTCCATTCTC
TCAAGAACAGATCTCCAAAGTTTGCGAAACTTTAGAAGAATGTGGCGATA
TTGAGCGACTATCCCGATTCTTATGGTCACTACCCACAACTCCCGATGTC
CGTGATGTCATGAACTCAAGCGAAACAGTATTAAGAGCAAAAGCACTAGT
AGCTTTTCACAATCATCACTTTCATGAACTTTATTACATACTCGAACACT
TTCGGTTCGGTAAAAAATCACATGGTAAATTACAAGCCATGTGGCTTGAA
GCACATTACATGGAAGCCGAAAGGTTACGCGGTCGTCCGCTCGGACCAGT
CGATAAGTATCGCGTTCGAAAGCGTTTTCCACTTCCACGAACCATTTGGG
ATGGCGAACAAAAGACGCATTGTTTCAAAGAACGAACAAGAAAACTCTTA
AGGGAATTCTACTTGCAAGATCCTTACCCAAGTCCATCCAAGAAGCGCGA
CCTTGCAGAAGCAACACACCTGACACCAACGCAAGTTGGTAATTGGTTCA
AAAATCGACGACAAAGAGACAGAGCTGCTGCAGCCAAACACAAATGGACT
TTAAACCTCCCGTTTTGAAAGAATACATAAGCACATCACCTCCTTACATA
AAACATCGAAGTACTCCCGACAGCGTCGAGAGCAACGATCCTAAACACAC
GATTATTCCTAACGACGACGACGCTCACCGACAATCACCGATCGTTTTCA
TCGACAACGAAGAGAAACATTTCATTAAACGATCGCCGAAAGATTTTGTT
GATCGACGACTTTTGCCAGGTGCAGCACCGCTACCTTTGAAATACAAAGC
AAGTAAAGCATATCATTTACAAACCAGCACAATGGGTCCACTCTGGTGCA
CAAGCTCCTGTTGCTCAGAAACCAACGTCAAGAGATGAACATGCAACATT
CCTTCGAAGATGACGATGATAGCGACACGTTCGAAAACATCCTCGACAAC
GACGAACAAGATTCCGATTCCGAACATTCTACCGACAACCGCAAAACTTT
ACAGTCCAATCCCGACAGCGACAAATTGAAAGCTGTTATCAATCACCGAT
TATTCAGCGATCCAAATATGGTCAAGTCTGTACCCATCTTGACACCCAAA
CCAACAACGAATTCGCACTCGACTTTTATGATGTCCGACATTCTAAAGAA
AACCTCATCCACGCCACCTACCGCAAACATGGTCCTAAAGCCCTATCTAC
ACAATAAACCAAACCTGTTTGTACACACGAGGTAAATCAACGAAAACCAA
CGGCAGCCGAATTCTTCTTCCCGCCATCAGGGCACGGACAGCGATACCCT
TCAACTCACATGACTTCACCTGTACCATTGGTGTCGCCCTACCCCTACCC
TTCACCACCCTACCGTTCACCCAAAGAACCACAACCACTAACACCATCAT
CACCGACATCTTCAAACTCACCGATTCCATTCTCTCAAGAACAGATCTCC
AAAGTTTGCGAAACTTTAGAAGAATGTGGCGATATTGAGCGACTATCCCG
ATTCTTATGGTCACTACCCACAACTCCCGATGTCCGTGATGTCATGAACT
CAAGCGAAACAGTATTAAGAGCAAAAGCACTAGTAGCTTTTCACAATCAT
CACTTTCATGAACTTTATTACATACTCGAACACTTTCGGTTCGGTAAAAA
ATCACATGGTAAATTACAAGCCATGTGGCTTGAAGCACATTACATGGAAG
CCGAAAGGTTACGCGGTCGTCCGCTCGGACCAGTCGATAAGTATCGCGTT
CGAAAGCGTTTTCCACTTCCACGAACCATTTGGGATGGCGAACAAAAGAC
GCATTGTTTCAAAGAACGAACAAGAAAACTCTTAAGGGAATTCTACTTGC
AAGATCCTTACCCAAGTCCATCCAAGAAGCGCGACCTTGCAGAAGCAACA
CACCTGACACCAACGCAAGTTGGTAATTGGTTCAAAAATCGACGACAAAG
AGACAGAGCTGCTGCAGCCAAACACAAATGGACTTTAAACCTCCCGTTTT
GAAAGAATACATAAGCACATCACCTCCTTACATAAAACATCGAAGTACTC
CCGACAGCGTCGAGAGCAACGATCCTAAACACACGATTATTCCTAACGAC
GACGACGCTCACCGACAATCACCGATCGTTTTCATCGACAACGAAGAGAA
ACATTTCATTAAACGATCGCCGAAAGATTTTGTTGATCGACGACTTTTGC
CAGGTGCAGCACCGCTACCTTTGAAATACAAAGCAAGTAAAGCATATCAT
TTACAAACCAGCACAATGGGTCCACTCTGGTGCACAAGCTCCTGTTGCTC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010764XLOC_010764Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019178-proteinTCONS_00019178-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019178-exon-sc0000320-1575043694:124399..124995TCONS_00019178-exon-sc0000320-1575043694:124399..124995Clytia hemisphaericaexon
TCONS_00019178-exon-sc0000320-1575043694:122800..123541TCONS_00019178-exon-sc0000320-1575043694:122800..123541Clytia hemisphaericaexon
TCONS_00019178-exon-sc0000320-1575043694:121868..122676TCONS_00019178-exon-sc0000320-1575043694:121868..122676Clytia hemisphaericaexon
TCONS_00019178-exon-sc0000320-1510915933:124399..124995TCONS_00019178-exon-sc0000320-1510915933:124399..124995Clytia hemisphaericaexon
TCONS_00019178-exon-sc0000320-1510915933:122800..123541TCONS_00019178-exon-sc0000320-1510915933:122800..123541Clytia hemisphaericaexon
TCONS_00019178-exon-sc0000320-1510915933:121868..122676TCONS_00019178-exon-sc0000320-1510915933:121868..122676Clytia hemisphaericaexon
TCONS_00019178-exon-sc0000320-1491911889:124399..124995TCONS_00019178-exon-sc0000320-1491911889:124399..124995Clytia hemisphaericaexon
TCONS_00019178-exon-sc0000320-1491911889:122800..123541TCONS_00019178-exon-sc0000320-1491911889:122800..123541Clytia hemisphaericaexon
TCONS_00019178-exon-sc0000320-1491911889:121868..122676TCONS_00019178-exon-sc0000320-1491911889:121868..122676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000320supercontigsc0000320:121868..124995 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0548908	0.0713695	0.0207167	0.0202681	0.0493489	0.0584942	0.541043	0.52854	0.308369	0.401064	0	0.207156	9.47943	9.60437	0.124675	0.222993	25.0534	20.2869	15.5017	21.1468	26.7127	27.6467	6.98597	11.1386	13.8298	15.2181	34.1708	21.7148	0.162465	0.24829
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR031701SIX1_SD
IPR014710RmlC-like_jellyroll
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
[Close]
BLAST of TCONS_00019178 vs. Swiss-Prot (Human)
Match: SIX6 (Homeobox protein SIX6 OS=Homo sapiens GN=SIX6 PE=1 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 2.064e-90
Identity = 138/187 (73.80%), Postives = 166/187 (88.77%), Query Frame = 3 
Query:  801 EQISKVCETLEECGDIERLSRFLWSLPTTPDVRDVMNSSETVLRAKALVAFHNHHFHELYYILEHFRFGKKSHGKLQAMWLEAHYMEAERLRGRPLGPVDKYRVRKRFPLPRTIWDGEQKTHCFKERTRKLLREFYLQDPYPSPSKKRDLAEATHLTPTQVGNWFKNRRQRDRAAAAKHKNQRQEMN 1361
            +Q++ VCETLEE GD+ERL RFLWSLP  P   + +N +E+VLRA+A+VAFH  ++ ELY+ILE+ +F K+SH KLQA+WLEAHY EAE+LRGRPLGPVDKYRVRK+FPLPRTIWDGEQKTHCFKERTR LLRE+YLQDPYP+PSKKR+LA+AT LTPTQVGNWFKNRRQRDRAAAAK++ Q+Q ++
Sbjct:   12 QQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLS 198
The following BLAST results are available for this feature:
BLAST of TCONS_00019178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX62.064e-9073.80Homeobox protein SIX6 OS=Homo sapiens GN=SIX6 PE=1... [more]
back to top