TCONS_00019194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019194
Unique NameTCONS_00019194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019194 ID=TCONS_00019194|Name=TCONS_00019194|organism=Clytia hemisphaerica|type=transcript|length=536bp
tttttgggtgGGTTAAAGTTTTCTTCACACCATTTATTCATTGACTGAAC
CATGAATGACTGAACCGATTTTAAAGTTTATATACTGTACTTAAATTGGA
ATTTTGCATCCTAAAAGTCCACACCATCTCGGCGAACTTCTTCTTTTTTG
GTGAATCCGGTACACTTACCTTTTTGTTTGGATAGAAGATCCTAATCACG
TGCCTTTTAAGCTTCTTTTAATACCTCTAGAGCAGTTCAAATGCTCCCCG
TGCTAAGATAAAGCAACCTTTTAATAAGAATGATTGACCAAGCTTTTTGC
AGTCATTTCGAAATCATTTACTAATAATTATtatcatttaaaatttcatc
atgaatattacTTCACTTAAAAATAAGAGGAGCGCAGTAGAGCGCTTAAA
ATTCCTTGTATCGAAACTTCTGACGTCAATTCAAGACTCTCCCAACATTT
TACGGATCCTACACAAAAAAGTGCAGACTGCAAGAGAATCTAAAGTATAA
TATTGACTTCAAATCAAGGGAGATAATTGCTTCCAA
Run BLAST on NCBI

transcript from alignment at sc0000320:154545..155080

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019194 ID=TCONS_00019194|Name=TCONS_00019194|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at sc0000320:154545..155080 (Clytia hemisphaerica)
TTGGAAGCAATTATCTCCCTTGATTTGAAGTCAATATTATACTTTAGATT
CTCTTGCAGTCTGCACTTTTTTGTGTAGGATCCGTAAAATGTTGGGAGAG
TCTTGAATTGACGTCAGAAGTTTCGATACAAGGAATTTTAAGCGCTCTAC
TGCGCTCCTCTTATTTTTAAGTGAAgtaatattcatgatgaaattttaaa
tgataATAATTATTAGTAAATGATTTCGAAATGACTGCAAAAAGCTTGGT
CAATCATTCTTATTAAAAGGTTGCTTTATCTTAGCACGGGGAGCATTTGA
ACTGCTCTAGAGGTATTAAAAGAAGCTTAAAAGGCACGTGATTAGGATCT
TCTATCCAAACAAAAAGGTAAGTGTACCGGATTCACCAAAAAAGAAGAAG
TTCGCCGAGATGGTGTGGACTTTTAGGATGCAAAATTCCAATTTAAGTAC
AGTATATAAACTTTAAAATCGGTTCAGTCATTCATGGTTCAGTCAATGAA
TAAATGGTGTGAAGAAAACTTTAACCcacccaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010775XLOC_010775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019194-exon-sc0000320-1491911889:154545..155080TCONS_00019194-exon-sc0000320-1491911889:154545..155080Clytia hemisphaericaexon
TCONS_00019194-exon-sc0000320-1510915933:154545..155080TCONS_00019194-exon-sc0000320-1510915933:154545..155080Clytia hemisphaericaexon
TCONS_00019194-exon-sc0000320-1575043694:154545..155080TCONS_00019194-exon-sc0000320-1575043694:154545..155080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000320supercontigsc0000320:154545..155080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.650968	0.634796	0	0	0.146311	0	0.139487	0.130586	0.0914263	0.113246	0	0.21677	0	0.749351	0.369641	0.132227	1.0588	0.16696	0.461329	0.120687	0.104899	0	0	0	0.116486	0.207922	0.148768	0.317538	0.361262	0.245379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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