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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019197 ID=TCONS_00019197|Name=TCONS_00019197|organism=Clytia hemisphaerica|type=transcript|length=3141bp
GTTTATCATCAACACCAACCGATGGAATTATCTGCAAAAATCGTTCCTTG
TTATCGGTGTCTGCGCATGCGTCATCATCTTCACCCTCTATGTTCAAATC
AGTAAAGAGCTTTCCGCCATGCGTCGGAGGGTTTACCAATCAGGTGCCAC
TAGCCGTGCATCAAATCGTAGACTCGTAAAGCGAAGAGCAGCTAAAAAGC
TAATCATTCGTATCATAACTGTTCTTATTCTGACAAATATCCCTGTGACA
GTATTTATCATTATTTTGAGGGAGGCGAAAGGGCTAACGGAGCTAACATC
GACACTATTTTGGTTAGGTTTGCCAGCTTTCGCGAGGCTTGGAATTATTT
TTGATCCATTAATATTGGTGTTGAGGTCGAAACGAATCAGAAAAGCTATG
AAAAGTGTTTTCTTGGGACAAGATGATCAGGAAGAAAGTGCAGAAAATTG
ACAAATATTGTAGAGGTGATTCGAAAATTGTTTGTTCTCCCTGGAACTCA
CATATTGTGAATTTTTCTTGACAATCTTTTACAATTGGCCCTATCGGAAC
TgaactttattgattttttatatatttctgtTTCGACGATCCTACCAGTG
TTTCATTCTAGTGCCAAGTTTTACCCATAAGTTTCCCATGGGTCATATAG
TGTTTCGAAGTTTTACTAAATATACGATGTAATTTAAAATAGTTTGTGCG
ATTGCGAAGAGCAGTGATTGTACCTGCCAGGAAGGGTCCTTCGCATTTTA
GAgtgttttttagctgttttgaaatatattgaacTGAATGTATCTTAGAT
ACTTTGTCTTTGGAAATATTCCTTTTAAAAATGATTATGTAAAAATGGAA
ACTAGTGATATTAAACTATCATATCTGTAAACTTATTTACAATACAAAAT
TAACCGAGAGCAAAGTTGGGTTCGGTTCTTTAGTCTATCCGATTCAGTAA
TGCTCAGATAAACGTATTTGCACGGTGATCCTCTTTTATATGAAATATGc
tattttaaaattaataattaaaatattacTATTTACCATGCACcgtcaaa
aaaagaataaatgGCGGAAAAGCGATTTTCTTCACCATCGCCCTCCCCGC
CCTCTAAGGTTGCAGCCTCTGCCACAGTGTTTATGTTCTTTGCTTTCTCA
ATGGCTTGTTGTAATTCCATTTCTTCGTCATAGTTAGTTATAATAATAAT
AGGTGCAAGGATCGGAATATGTCCATCTTCTGACGTCATAGTTCCTTTAC
GTGACGTTCTACTATCTTTACGCACGCTCATTGTACTGTCTTTACGTGTA
CTTGTGGACCCTAATCGTTTTCCCGTGCTACTGGTACGTGAAGAAAGTTC
ACCATTAAACGTATCACGTCTTTCGCTACGTTCTTCCGCGCGCAATGCTT
CCGTGGCTTCTTCATCTGGGTCATGTCCTATTTCGTATTTGCCACGATTT
CGTGAAACTTTGTAACATAAACAGTCTATGAATTTATTCCAACATAGTTT
ACTAGAGTCTGTTTGTGCTTTCATGCTGCCCAATGAAATTTTACGACGCC
GGTTGTTTAAACGTCTACGTCGCTTCAACGGATGTTCTTTGCGTCGGAAA
AAGCTTTCGAATGCTACACGGTATGATTTATTCATTCCGGCGTAGATCCA
CGGATTAACGGCAGCGTTTATATAGATCAATATTTCGAAGAAACGTATAG
TCTCTGAGACGTCTTCGAACATGAAAGACACAATATGATGCGGTAACAAA
CACACTGCAAACGCAGTGACCAGGAATGAAAACATACGTAATGTCTTTAA
TGTTTGTTTGACACGTTTCAAAGCAAATACTGTCAACGCATCTTTACCGT
CCGTTCCTGTCACCAGATTTTGAAAACTGCTGTGTAAACGCTGCATTGAA
CCAACGAAAGATTTTCTTTTCGAAAGATTCGTTTCTTGTGGTCTCAAAGC
GTTCGTATCTTCCTTTTCACAATCCTCACTGCCATACGACGATAATTTTG
CGTCTAACGTTATAGATTTCCGACAAGTCGAATGTCGTTTTTTTGCAGCT
TCTGCTGTCTCCGGATCGCAGATTGAATCGAGCGAAAAAGAGCGTCTCAT
AGATGTACGATGAAAAGATTGTCGCTTAACAATACCACTCAAATGATTTG
AACTTCCGCTCAAAAAGTCATGAATCTCATTGGACAAGAATTCTGATGAA
ACAGGTcgaattctgattggattgtCATCTGTTAAACTTACAAGATCACC
ATCAGAATGACTTCGCTCTTTGATCAGATTGGTAGACTGTTTTCGATTAT
TCTTAGCGAGTTTGATAgttgttttgttcttttttcgTATTCTGTACCAA
CAAATGGAGTATAGGATGACCATAACGAGCAACGGAATGGCGTATTGGAA
AAGAAATACGAGTGAAGCATAAGCGATGTTTTTCGGGCGATCCCAAGCAC
GAACACAATGTGAATTGTCTTGTTTGTATTCGATAACGGATAATGGTGCT
GCACTCACGATGGCTAAAATATCGATCACGGCAATGATGAAGTATGTCTT
TTCTGCTGTTAACAGTAACTTGAATCGACGTGAATTCACAATAACGTTAC
ACCTTTCTACTGCAATGGCCACCAGGCTAGATACGGTAATAGTTAAGCCT
GCAATCACAAACGGGTTGATAACTTTGCAGGTTGAGGTTCCAAACGAGTC
TATCAGCCTATGCTCGCCTATCACGAAGACTGGAATACCAAGAACCAACA
TGAAAATGTCACAAACACATAAATTGCATATCAAAATGTTTGTCGCTCCT
TGAAGCGTCAGATATTGTTTTGTCGCCTTGACAACGAGAATATTACCAAA
TACACCAAGGATAAAAATGAAGCTGTAAAGTCCAGCCTTTATGGCTGTCA
TTGTTTGATCATTCATAATGCTTTCGGTTGAAGTCTCTGTCGAGTTCATT
TCGTAAAATTTATCGCATTGAGTTCTGTTAGTCTTTTTGACTGTCCGAGG
TTTGACGCTATGCAAACAATAGTGAAGTTGTCTCTCGTCGATTTCTTTCC
ACACAATAATCAgatcaaatcaaaaatcaatttttatgagTCATTTCAAA
ACATTGGTTGATCGATTTGTTTTCCAACATTGTACAAACAT Run BLAST on NCBI protein sequence of TCONS_00019197-protein >TCONS_00019197-protein ID=TCONS_00019197-protein|Name=TCONS_00019197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp
MNSTETSTESIMNDQTMTAIKAGLYSFIFILGVFGNILVVKATKQYLTLQ
GATNILICNLCVCDIFMLVLGIPVFVIGEHRLIDSFGTSTCKVINPFVIA
GLTITVSSLVAIAVERCNVIVNSRRFKLLLTAEKTYFIIAVIDILAIVSA
APLSVIEYKQDNSHCVRAWDRPKNIAYASLVFLFQYAIPLLVMVILYSIC
WYRIRKKNKTTIKLAKNNRKQSTNLIKERSHSDGDLVSLTDDNPIRIRPV
SSEFLSNEIHDFLSGSSNHLSGIVKRQSFHRTSMRRSFSLDSICDPETAE
AAKKRHSTCRKSITLDAKLSSYGSEDCEKEDTNALRPQETNLSKRKSFVG
SMQRLHSSFQNLVTGTDGKDALTVFALKRVKQTLKTLRMFSFLVTAFAVC
LLPHHIVSFMFEDVSETIRFFEILIYINAAVNPWIYAGMNKSYRVAFESF
FRRKEHPLKRRRRLNNRRRKISLGSMKAQTDSSKLCWNKFIDCLCYKVSR
NRGKYEIGHDPDEEATEALRAEERSERRDTFNGELSSRTSSTGKRLGSTS
TRKDSTMSVRKDSRTSRKGTMTSEDGHIPILAPIIIITNYDEEMELQQAI
EKAKNINTVAEAATLEGGEGDGEENRFSAIYSFFDGAW Run BLAST on NCBI transcript from alignment at sc0000320:260627..263767 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019197 ID=TCONS_00019197|Name=TCONS_00019197|organism=Clytia hemisphaerica|type=transcript|length=3141bp|location=Sequence derived from alignment at sc0000320:260627..263767 (Clytia hemisphaerica)
ATGTTTGTACAATGTTGGAAAACAAATCGATCAACCAATGTTTTGAAATG
ActcataaaaattgatttttgatttgatcTGATTATTGTGTGGAAAGAAA
TCGACGAGAGACAACTTCACTATTGTTTGCATAGCGTCAAACCTCGGACA
GTCAAAAAGACTAACAGAACTCAATGCGATAAATTTTACGAAATGAACTC
GACAGAGACTTCAACCGAAAGCATTATGAATGATCAAACAATGACAGCCA
TAAAGGCTGGACTTTACAGCTTCATTTTTATCCTTGGTGTATTTGGTAAT
ATTCTCGTTGTCAAGGCGACAAAACAATATCTGACGCTTCAAGGAGCGAC
AAACATTTTGATATGCAATTTATGTGTTTGTGACATTTTCATGTTGGTTC
TTGGTATTCCAGTCTTCGTGATAGGCGAGCATAGGCTGATAGACTCGTTT
GGAACCTCAACCTGCAAAGTTATCAACCCGTTTGTGATTGCAGGCTTAAC
TATTACCGTATCTAGCCTGGTGGCCATTGCAGTAGAAAGGTGTAACGTTA
TTGTGAATTCACGTCGATTCAAGTTACTGTTAACAGCAGAAAAGACATAC
TTCATCATTGCCGTGATCGATATTTTAGCCATCGTGAGTGCAGCACCATT
ATCCGTTATCGAATACAAACAAGACAATTCACATTGTGTTCGTGCTTGGG
ATCGCCCGAAAAACATCGCTTATGCTTCACTCGTATTTCTTTTCCAATAC
GCCATTCCGTTGCTCGTTATGGTCATCCTATACTCCATTTGTTGGTACAG
AATAcgaaaaaagaacaaaacaacTATCAAACTCGCTAAGAATAATCGAA
AACAGTCTACCAATCTGATCAAAGAGCGAAGTCATTCTGATGGTGATCTT
GTAAGTTTAACAGATGacaatccaatcagaattcgACCTGTTTCATCAGA
ATTCTTGTCCAATGAGATTCATGACTTTTTGAGCGGAAGTTCAAATCATT
TGAGTGGTATTGTTAAGCGACAATCTTTTCATCGTACATCTATGAGACGC
TCTTTTTCGCTCGATTCAATCTGCGATCCGGAGACAGCAGAAGCTGCAAA
AAAACGACATTCGACTTGTCGGAAATCTATAACGTTAGACGCAAAATTAT
CGTCGTATGGCAGTGAGGATTGTGAAAAGGAAGATACGAACGCTTTGAGA
CCACAAGAAACGAATCTTTCGAAAAGAAAATCTTTCGTTGGTTCAATGCA
GCGTTTACACAGCAGTTTTCAAAATCTGGTGACAGGAACGGACGGTAAAG
ATGCGTTGACAGTATTTGCTTTGAAACGTGTCAAACAAACATTAAAGACA
TTACGTATGTTTTCATTCCTGGTCACTGCGTTTGCAGTGTGTTTGTTACC
GCATCATATTGTGTCTTTCATGTTCGAAGACGTCTCAGAGACTATACGTT
TCTTCGAAATATTGATCTATATAAACGCTGCCGTTAATCCGTGGATCTAC
GCCGGAATGAATAAATCATACCGTGTAGCATTCGAAAGCTTTTTCCGACG
CAAAGAACATCCGTTGAAGCGACGTAGACGTTTAAACAACCGGCGTCGTA
AAATTTCATTGGGCAGCATGAAAGCACAAACAGACTCTAGTAAACTATGT
TGGAATAAATTCATAGACTGTTTATGTTACAAAGTTTCACGAAATCGTGG
CAAATACGAAATAGGACATGACCCAGATGAAGAAGCCACGGAAGCATTGC
GCGCGGAAGAACGTAGCGAAAGACGTGATACGTTTAATGGTGAACTTTCT
TCACGTACCAGTAGCACGGGAAAACGATTAGGGTCCACAAGTACACGTAA
AGACAGTACAATGAGCGTGCGTAAAGATAGTAGAACGTCACGTAAAGGAA
CTATGACGTCAGAAGATGGACATATTCCGATCCTTGCACCTATTATTATT
ATAACTAACTATGACGAAGAAATGGAATTACAACAAGCCATTGAGAAAGC
AAAGAACATAAACACTGTGGCAGAGGCTGCAACCTTAGAGGGCGGGGAGG
GCGATGGTGAAGAAAATCGCTTTTCCGCcatttattctttttttgacgGT
GCATGGTAAATAgtaatattttaattattaattttaaaatagCATATTTC
ATATAAAAGAGGATCACCGTGCAAATACGTTTATCTGAGCATTACTGAAT
CGGATAGACTAAAGAACCGAACCCAACTTTGCTCTCGGTTAATTTTGTAT
TGTAAATAAGTTTACAGATATGATAGTTTAATATCACTAGTTTCCATTTT
TACATAATCATTTTTAAAAGGAATATTTCCAAAGACAAAGTATCTAAGAT
ACATTCAgttcaatatatttcaaaacagctaaaaaacacTCTAAAATGCG
AAGGACCCTTCCTGGCAGGTACAATCACTGCTCTTCGCAATCGCACAAAC
TATTTTAAATTACATCGTATATTTAGTAAAACTTCGAAACACTATATGAC
CCATGGGAAACTTATGGGTAAAACTTGGCACTAGAATGAAACACTGGTAG
GATCGTCGAAacagaaatatataaaaaatcaataaagttcAGTTCCGATA
GGGCCAATTGTAAAAGATTGTCAAGAAAAATTCACAATATGTGAGTTCCA
GGGAGAACAAACAATTTTCGAATCACCTCTACAATATTTGTCAATTTTCT
GCACTTTCTTCCTGATCATCTTGTCCCAAGAAAACACTTTTCATAGCTTT
TCTGATTCGTTTCGACCTCAACACCAATATTAATGGATCAAAAATAATTC
CAAGCCTCGCGAAAGCTGGCAAACCTAACCAAAATAGTGTCGATGTTAGC
TCCGTTAGCCCTTTCGCCTCCCTCAAAATAATGATAAATACTGTCACAGG
GATATTTGTCAGAATAAGAACAGTTATGATACGAATGATTAGCTTTTTAG
CTGCTCTTCGCTTTACGAGTCTACGATTTGATGCACGGCTAGTGGCACCT
GATTGGTAAACCCTCCGACGCATGGCGGAAAGCTCTTTACTGATTTGAAC
ATAGAGGGTGAAGATGATGACGCATGCGCAGACACCGATAACAAGGAACG
ATTTTTGCAGATAATTCCATCGGTTGGTGTTGATGATAAAC Coding sequence (CDS) from alignment at sc0000320:260627..263767 >TCONS_00019197 ID=TCONS_00019197|Name=TCONS_00019197|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at sc0000320:260627..263767 (Clytia hemisphaerica)
ATGAACTCGACAGAGACTTCAACCGAAAGCATTATGAATGATCAAACAAT
GACAGCCATAAAGGCTGGACTTTACAGCTTCATTTTTATCCTTGGTGTAT
TTGGTAATATTCTCGTTGTCAAGGCGACAAAACAATATCTGACGCTTCAA
GGAGCGACAAACATTTTGATATGCAATTTATGTGTTTGTGACATTTTCAT
GTTGGTTCTTGGTATTCCAGTCTTCGTGATAGGCGAGCATAGGCTGATAG
ACTCGTTTGGAACCTCAACCTGCAAAGTTATCAACCCGTTTGTGATTGCA
GGCTTAACTATTACCGTATCTAGCCTGGTGGCCATTGCAGTAGAAAGGTG
TAACGTTATTGTGAATTCACGTCGATTCAAGTTACTGTTAACAGCAGAAA
AGACATACTTCATCATTGCCGTGATCGATATTTTAGCCATCGTGAGTGCA
GCACCATTATCCGTTATCGAATACAAACAAGACAATTCACATTGTGTTCG
TGCTTGGGATCGCCCGAAAAACATCGCTTATGCTTCACTCGTATTTCTTT
TCCAATACGCCATTCCGTTGCTCGTTATGGTCATCCTATACTCCATTTGT
TGGTACAGAATAcgaaaaaagaacaaaacaacTATCAAACTCGCTAAGAA
TAATCGAAAACAGTCTACCAATCTGATCAAAGAGCGAAGTCATTCTGATG
GTGATCTTGTAAGTTTAACAGATGacaatccaatcagaattcgACCTGTT
TCATCAGAATTCTTGTCCAATGAGATTCATGACTTTTTGAGCGGAAGTTC
AAATCATTTGAGTGGTATTGTTAAGCGACAATCTTTTCATCGTACATCTA
TGAGACGCTCTTTTTCGCTCGATTCAATCTGCGATCCGGAGACAGCAGAA
GCTGCAAAAAAACGACATTCGACTTGTCGGAAATCTATAACGTTAGACGC
AAAATTATCGTCGTATGGCAGTGAGGATTGTGAAAAGGAAGATACGAACG
CTTTGAGACCACAAGAAACGAATCTTTCGAAAAGAAAATCTTTCGTTGGT
TCAATGCAGCGTTTACACAGCAGTTTTCAAAATCTGGTGACAGGAACGGA
CGGTAAAGATGCGTTGACAGTATTTGCTTTGAAACGTGTCAAACAAACAT
TAAAGACATTACGTATGTTTTCATTCCTGGTCACTGCGTTTGCAGTGTGT
TTGTTACCGCATCATATTGTGTCTTTCATGTTCGAAGACGTCTCAGAGAC
TATACGTTTCTTCGAAATATTGATCTATATAAACGCTGCCGTTAATCCGT
GGATCTACGCCGGAATGAATAAATCATACCGTGTAGCATTCGAAAGCTTT
TTCCGACGCAAAGAACATCCGTTGAAGCGACGTAGACGTTTAAACAACCG
GCGTCGTAAAATTTCATTGGGCAGCATGAAAGCACAAACAGACTCTAGTA
AACTATGTTGGAATAAATTCATAGACTGTTTATGTTACAAAGTTTCACGA
AATCGTGGCAAATACGAAATAGGACATGACCCAGATGAAGAAGCCACGGA
AGCATTGCGCGCGGAAGAACGTAGCGAAAGACGTGATACGTTTAATGGTG
AACTTTCTTCACGTACCAGTAGCACGGGAAAACGATTAGGGTCCACAAGT
ACACGTAAAGACAGTACAATGAGCGTGCGTAAAGATAGTAGAACGTCACG
TAAAGGAACTATGACGTCAGAAGATGGACATATTCCGATCCTTGCACCTA
TTATTATTATAACTAACTATGACGAAGAAATGGAATTACAACAAGCCATT
GAGAAAGCAAAGAACATAAACACTGTGGCAGAGGCTGCAACCTTAGAGGG
CGGGGAGGGCGATGGTGAAGAAAATCGCTTTTCCGCcatttattcttttt
ttgacgGTGCATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019197-exon-sc0000320-1491911889:260627..263767 | TCONS_00019197-exon-sc0000320-1491911889:260627..263767 | Clytia hemisphaerica | exon |
| TCONS_00019197-exon-sc0000320-1510915933:260627..263767 | TCONS_00019197-exon-sc0000320-1510915933:260627..263767 | Clytia hemisphaerica | exon |
| TCONS_00019197-exon-sc0000320-1575043694:260627..263767 | TCONS_00019197-exon-sc0000320-1575043694:260627..263767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:260627..263767 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00019197 vs. Swiss-Prot (Human)
Match: NPY1R (Neuropeptide Y receptor type 1 OS=Homo sapiens GN=NPY1R PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.812e-17 Identity = 63/216 (29.17%), Postives = 108/216 (50.00%), Query Frame = -1
Query: 2284 YSFIFILGVFGNILVVKATKQYLTLQGATNILICNLCVCDIFMLVLGIP---VFVIGEHRLIDSFGTSTCKVINPFV-IAGLTITVSSLVAIAVERCNVIVNSRRFKLLLTAEKTYFIIAVIDILAIVSAAPLSVIEYKQDNSHCVRAWDRPKN--------------IAYASLVFLFQYAIPLLVMVILYSICWYRIRKKNKTTIKLAKNNRKQS 2877
Y + ILGV GN+ ++ + ++ TNILI NL D+ + ++ +P V+ + +H + FG + CK +NPFV +T+++ SLV IAVER +I+N R ++ Y IAVI +LA+ S+ P + + D D K+ ++Y +L+ + QY PL + I Y + R++++N K+ N + S
Sbjct: 47 YGAVIILGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWV---FGEAMCK-LNPFVQCVSITVSIFSLVLIAVERHQLIINPRGWR--PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFQNVTLDAYKDKYVCFDQFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNNMMDKMRDNKYRSS 256
The following BLAST results are available for this feature:
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