TCONS_00019215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019215
Unique NameTCONS_00019215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019215 ID=TCONS_00019215|Name=TCONS_00019215|organism=Clytia hemisphaerica|type=transcript|length=953bp
CCCCTTCCTCTCCCTACTAATGATGCTGCGAGTCGGTTTAGAATTCAACA
TCGTAGATGACGGATAAGAGGGGAGATCGCTATTGTCATAGAAAACTAGG
GCAATTCCATTAGTTTTGGCCTTTTGGGCCcccatttttttcatcatttt
taacTAAAGTGTCTCCTTCCCCATCGTGCTTGACAtgcaaaaaaatatca
tcaattaTCATGTCTCATTTCATGAGGGAAATTGTAACATAAACtttctt
ttattaaaaaaaggggAGGTGCTCTTTGTAAAGGAATGTTTGTTATTGTC
CCAAGTGCaaaagttcaaatttcaaaacaatttcaaatctCTTCAAATAA
TTTAACAGATGCTGCAACTGTTCAAATAATCTTCCCTTACCACCATTCGT
GGCTATAAAATGCCTTCAGAGTGCTTTAAACATCCTTTTAAACTTGATTG
GATAAAGACATTGGGTCTTTTGGTTCAACAGTATCCAGTTTTGTTGGTGA
AAGATGAAGTCGATCATTGGTTTGATCCTGGTGGTTGTAGTCCTGGCTAC
TTCAGCTGAAGAATGTCAAGACAGATTGGGAGGTTATTATTGCTCAGCTT
ACCAACAACAAGGATATTGCTCAACCAGAAGAGATACAATGATATATTAT
TGTCCAAAAACATGTGAATTCTGTGATGATACTACTAATGCTGGTGGAAA
CACAAAACATGGTCAATGTGGCAGAACTACAGTAGATTCACGAATCATTT
CTGGTGAACTTGCCAAGAAGGATGCATGGCCTTGGCAAATCAGTTTGTAT
TACAATGGCCAGTTCATGTGTGGAGGTTCAATCTTGTCACCAAGATGGGT
ATTGACTGCTGCTCATTGTGTAGATGGGTTCGATTACCGTGCTTATCAGA
TCGTATTGGGAGATTATGATCGTCGCTCAACAGATGGTGATGAACAAGTT
NAA
Run BLAST on NCBI

transcript from alignment at sc0000321:173270..176647+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019215 ID=TCONS_00019215|Name=TCONS_00019215|organism=Clytia hemisphaerica|type=transcript|length=3378bp|location=Sequence derived from alignment at sc0000321:173270..176647+ (Clytia hemisphaerica)
CCCCTTCCTCTCCCTACTAATGATGCTGCGAGTCGGTTTAGAATTCAACA
TCGTAGATGACGGATAAGAGGGGAGATCGCTATTGTCATAGAAAACTAGG
GCAATTCCATTAGTTTTGGCCTTTTGGGCCcccatttttttcatcatttt
taacTAAAGTGTCTCCTTCCCCATCGTGCTTGACAtgcaaaaaaatatca
tcaattaTCATGTCTCATTTCATGAGGGAAATTGTAACATAAACtttctt
ttattaaaaaaaggggAGGTGCTCTTTGTAAAGGAATGTTTGTTATTGTC
CCAAGTGCaaaagttcaaatttcaaaacaatttcaaatctCTTCAAATAA
TTTAACAGATGCTGCAACTGTTCAAATAATCTTCCCTTACCACCATTCGT
GGCTATAAAATGCCTTCAGAGTGCTTTAAACATCCTTTTAAACTTGATTG
GATAAAGACATTGGGTCTTTTGGTTCAACAGTATCCAGTTTTGTTGGTGA
AAGATGAAGTCGATCATTGGTTTGATCCTGGTGGTTGTAGTCCTGGCTAC
TTCAGCTGAAGGTATGCATAGCTCTTTTACTTTCTAGCTGGTACTCAACA
TTTTGGCAACGTCCAGATTACGTCCACATAggaagcgagataccctgcaa
aatttatggatgagagcggtttttacgacactgtaattattgtctttgtt
ttatcaaaatataatgaatgtcataaacgtctgcactccctcataaattt
tgcagggtatctctcTACGCCTATGGTCCATACCGTTCAACTAACGTCAT
ATGAATGTTAAGACGTCagcttggaaatttttttcaactctgaaGTCGCC
CGCATCATCTGCTTATCTGAGAAAAGTTAATGTAATAATAGTGAAGTTAT
TTTCACTGTAGATTACAAGCCCCCACTCCTTGATCCACAGTAAAGATGTT
TTTAAATGCCGCCATTATAGAAGGTGCTTAACTTCCCCCTGTGTATAATT
CTGCTTTTTGATGATAGAGCAAGATGAGTAACGTAAACAAAGCCTGGGAA
CGAGCTTGGAAAGTGTTTTTATTgctttaatttttcataatgtTATTCTT
TCAATTCTTCAGAATGTCAAGACAGATTGGGAGGTTATTATTGCTCAGCT
TACCAACAACAAGGATATTGCTCAACCAGAAGAGATACAATGATATATTA
TTGTCCAAAAACATGTGAATTCTGTGATGGTACGTCAAAACTTTAACATT
GTTTCGTTAAATTTTGTCTACTAAAATCTATGGTCCAAAGACTTTATATC
TCGCCTAATAAGTAGGGGTCAACCATTATGATCCGTAACATCTTTcgcat
gtgattggttcgaaGATTGGGTTTTAATACTTTTTTGAGAGGGCCCGTGA
ATAAGGCCTAGTAAAAGTTTTTATGGCCAAAAATCTGACGTTTTTAAGCT
ACGGATTCCAAGGGTTTGCCCCAACTATAAGTCTAACATACATCTTATCT
TAAAAGTTTTATTAGATGAATTCACTTATTCGTTGGAAGTTAGTTTAGtc
tcaagtaaaaaaaatgaaatctttaaaaatggaTTCTTATTGCACGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTTAGAATGTGG
CAGAACTACAGTAGATTCACGAATCATTTCTGGTGAACTTGCCAAGAAGG
ATGCATGGCCTTGGCAAATCAGTTTGTATTACAATGGCCAGTTCATGTGT
GGAGGTTCAATCTTGTCACCAAGATGGGTATTGACTGCTGCTCATTGTGT
AGATGGGTTCGATTACCGTGCTTATCAGATCGTATTGGGTAAGGACTGTA
AAATTTGATAACTTTCCTCGCAAATTTATGCTTGTTATAGTAGCCGATCC
TATCGTCTATCTACACATTATCACTGAAAAAGGCAATGATTCAGGaagcg
ggataaatttgaaaacgagtttagttcggggcggagtaaacagcggcgga
ggtgtttacagtgttccaaactctaccgccactatttTTACCGTAAACCA
CCCTGACGNCCACGGTTCTTACGTCAAATTTctaatgttttcatgctgaa
aGTCAAAAACCTACATCTTGGATATTTCACCTTTGGAAAAGAGTTAAGCT
GAAGGATTCTGTAGGGAAAATATCTGATTCTCCCTTCAAATTCATCTTTA
AAGGAGGTTATAGGCGATCAAAAATGAAACTCCCCTATTCATTTTATCAG
tttcctaattttttatttaaattcagATACTACTAATGCTGGTGGAAACA
CAAAACATGGTCGTAAGTATGAAAATATTACAATATATCTatgttttcaa
acttttaaaagcCGCTCTATAAAGAATAAAGGAACTATCTTCCCGTCCAA
ACCAAAAATTAATTCGAACTTTATACCTCCATTGTGGCTCCAATAAAACG
AATTTCAGGAAAATGATTTGGTAATTTCGGAAAGTTTAACAGCAAAGGCC
AAACAAACATGATGTGACTCGTGGTCTAACAAACTTTGACACAAAACTTT
AAAGTTTAATTAAAGAATCCATGCTAAAAACGTCACTCTACCATTTAGAA
TGTGGCAGAACTACAGTAGATTCACGAATCATTTCTGGTGAACTTGCCAA
GAAGGATGCATGGCCTTGGCAAATCAGTTTGTATTACAATGGCCAGTTCA
TGTGTGGAGGTTCAATCTTGTCACCAAGATGGGTATTGACTGCTGCTCAT
TGTGTAGATGGGTTCGATTACCGTGCTTATCAGATCGTATTGGGTAAGGA
CTGTAAAATTTGATAACTTTCCTCGCAAATTTATGCTTGTTATAGTAGCC
GATCCTATCGTCTATCTACACATTATCACTGAAAAAGGCAATGATTCAGG
aagcgggataaatttgaaaacgagtttagttcggggcggagtaaacagcg
gcggaggtgtttacagtgttccaaactctaccgccactatttTTACCGTA
AACCACCCTGACGCCCTGACTCTGCGCATATACTTTCtcgcgtttactga
ccctctaaacGGATGATAGCATCGTCTATTGTTATAGTAACTAAGAATTC
TGGTCTCCTGTTTATGCAGATCAGAAATTATTTTATACTAGACGTGTCGT
GTTTTCAAGTACGTGAAATACATGAATATTTGGTAAGGTGTTCACTAGCA
AATAATGtgtaatgaataatgaataagtGAACAcaaagggactgggttcg
agtttgaaaaaatcttcttttttttcttgttcagGAGATTATGATCGTCG
CTCAACAGATGGTGATGAACAAGTTNAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010788XLOC_010788Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019215-exon-sc0000321-1491911889:173270..173830TCONS_00019215-exon-sc0000321-1491911889:173270..173830Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1510915933:173270..173830TCONS_00019215-exon-sc0000321-1510915933:173270..173830Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1575043694:173270..173830TCONS_00019215-exon-sc0000321-1575043694:173270..173830Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1491911889:174382..174498TCONS_00019215-exon-sc0000321-1491911889:174382..174498Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1510915933:174382..174498TCONS_00019215-exon-sc0000321-1510915933:174382..174498Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1575043694:174382..174498TCONS_00019215-exon-sc0000321-1575043694:174382..174498Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1491911889:175596..175631TCONS_00019215-exon-sc0000321-1491911889:175596..175631Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1510915933:175596..175631TCONS_00019215-exon-sc0000321-1510915933:175596..175631Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1575043694:175596..175631TCONS_00019215-exon-sc0000321-1575043694:175596..175631Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1491911889:175918..176112TCONS_00019215-exon-sc0000321-1491911889:175918..176112Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1510915933:175918..176112TCONS_00019215-exon-sc0000321-1510915933:175918..176112Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1575043694:175918..176112TCONS_00019215-exon-sc0000321-1575043694:175918..176112Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1491911889:176604..176647TCONS_00019215-exon-sc0000321-1491911889:176604..176647Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1510915933:176604..176647TCONS_00019215-exon-sc0000321-1510915933:176604..176647Clytia hemisphaericaexon
TCONS_00019215-exon-sc0000321-1575043694:176604..176647TCONS_00019215-exon-sc0000321-1575043694:176604..176647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:173270..176647 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147474	0	0	0	0	0	1.15525e-06	0	0	0.432908	0	1.13212e-07	30.0206	19.8963	51.9716	231.481	1.18629	0.451997	35.5127	12.757	1.18635	32.8943	0.155689	0	2.84934	1.51306	0	0.0924339	5.34256e-06	0
Blast
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BLAST of TCONS_00019215 vs. Swiss-Prot (Human)
Match: CEL3B (Chymotrypsin-like elastase family member 3B OS=Homo sapiens GN=CELA3B PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 2.475e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 3 
Query:  738 SRIISGELAKKDAWPWQISLYY--NGQF--MCGGSILSPRWVLTAAHCVDGFDYRAYQIVLGDYDRRSTDGDEQV 950
            SR+++GE A   +WPWQ+SL Y  +G F   CGGS+++P WV+TA HC+     R YQ+VLG+YDR   +G EQV
Sbjct:   27 SRVVNGEDAVPYSWPWQVSLQYEKSGSFYHTCGGSLIAPDWVVTAGHCIS--SSRTYQVVLGEYDRAVKEGPEQV 99
The following BLAST results are available for this feature:
BLAST of TCONS_00019215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CEL3B2.475e-1650.67Chymotrypsin-like elastase family member 3B OS=Hom... [more]
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