TCONS_00019225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019225
Unique NameTCONS_00019225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019225 ID=TCONS_00019225|Name=TCONS_00019225|organism=Clytia hemisphaerica|type=transcript|length=2170bp
CCTTGACACTAATCTACTTCCAttttaattgaattttcagaatctagaat
agagaaaaaaaagacaaaaaaattctGTTATAAAACATCAAACAAACGAC
TCAAGAATCTTATCACAAACATTCGCGAGCTCTCTGGAAGGAGCAGTGAT
GCTGCCTAACGTTATCAAACTTACCTTTGCCCTTACCTTCTTTTTGGTTG
GCACGGGAGGCGCACGACAGCGTGAACGATGCGTACCGCTTATTAACGAC
CATTGTAAAGATCTTGGATACAACGCTACTTTGATTCCGAACGTTAAAGC
TGGGATTGATAAACTGGATGAAGCTGCTAGGAGAATCAGTGAATTTTCAC
CGTTATTTCAAGTGAATTGTtacgaaaatttcaagttttttattTGCAAC
ATGTTTCTACCGGTTTGTCATTCGATTAATGGAAACCCGACCCCCGTCTA
TCCATGTCGTCATGTTTGTGAGGAGGCGAGAAAAGGTTGTGAACCTCTGA
TGAAGAAATATAGTTTCACATGGCCCGATGTTTTGAATTGCGAATTCCTG
GCTAGTAACACGAAACAAAACGCCCTATGTGGTAGTCCACCGCCTTCCAA
GCCCACCCGCAAAACGCCACAAACTGAAGTTGTACCCACTGCCCCACCAG
CATGGGTCAAAGTGGTTGAACAATTTCCAAAAGTCGATCACAAACGTTTC
AAGTATCCTGAACGACCTATCATTTTCCTATCCTTCTGTTACAACTTATA
CTCGATTGGATACCTCATCCGGGTTTTTGGCAACTACGAAAACATCGTAT
GTGAGAACTCACCGCAAGGTCAACACGCTTTGATAGATGGGATGTCGTCT
ACATCGTGCGCCATTGTTTTCTTCCTTCTCTATTTCTTTGGAATGGCATC
TGCTTTGTGGTGGGTTGTCTTATCAGTTACCTGGTTTCTAGCTGCCGCTC
TCAAGTGGGGACACGAAGCGATCGAAAAGTATTCGTCACTTTTCCACGCG
GTCGCCTGGACTGTACCGACTATACAAACTATTATCGCGCTGGTGACTCG
TAAAGTAGACACTGATATGTTGGCAGGTGTTTGTTATATAGGAGCAACCA
ACAGTGAGAATTTATTAATGTTTGTGGCGTTACCGTTGCTTATCTATTTA
CTCATCGGAACACTTTTTCTCATCATGGGATTTGTGGCTTTGATCAAGAT
CCGGAAAGAACTGCAACGAGAACGTAACACGAACAAATTGGAACGTTTGA
TCATTCGAATCGGCATTTTCTCCGTCCTCTACTCCGTACCCGCCTCAATC
GTGGTCGGATGTTTTATACACGAGTATAACCGATTGAAACGTACCGAGCA
AGTGTCACAAGACATGTTATCTTGTCTTAAAGATCCAAATTGTGAAAAGG
ATTTGAAACCGCGCACCGAGATTTTCTACTTACGTTATTTCATGTTGTTG
GTTGTCGGTGTAACAAGCGGTGTGTGGATTTGGACATCCAAGACATTCGA
TTCGTGGAAGAATTTCTACCGACGACGTTTTCCTGAGAAATCGAGTAAAC
AAGAAGAGGAAAAGGAACgtctttataagaactcttttgCACCAACCACT
TCCAATCTCCAATCTGCCCATGCTCCGCCACGCAGAAGATCCTCAAACGA
AGCCTTAAATCAATACACGCCCGCCAGTACGGTTGCTTCACACCCCGCTA
TCGCCATCCAACCAGGAATGTACGCACAGCCTGcaactaatttctttttt
cctatCCAGCAACATCCGGCCGTCATGCAAGCACACAATCTACCCGTATC
ACAAGCTAAAATTGTTGATTCAAGTTCGCGCGGTTTTACAGTCACACCTT
CGTCAAATATGACATCAGATTATGAACATAACGAAGTATttaataattat
gaaaacaaacttATTCAAAATGGACATGATATGATGCATAGACAAGCAAA
CTATGCTCCAAGTAGCTCTTCAGAGCATTATACTGCTAGTCTACCTCGTA
ATGGTCGACCATTGGACCCTCCGGCTTCGCCGAAAAGTATGTCCAGTCGT
TCGCATTACTCGAACGAAGccaaaatgtgaaaatatttagggtTAGTTTC
ATATTTCTATTAGCTAACAAATTGTGTACaaattattttggttgccaGTG
CTTTGAACGTCACTCTAAGA
Run BLAST on NCBI

protein sequence of frizzled receptor 3

>TCONS_00019225-protein ID=TCONS_00019225-protein|Name=frizzled receptor 3|organism=Clytia hemisphaerica|type=polypeptide|length=643bp
MLPNVIKLTFALTFFLVGTGGARQRERCVPLINDHCKDLGYNATLIPNVK
AGIDKLDEAARRISEFSPLFQVNCYENFKFFICNMFLPVCHSINGNPTPV
YPCRHVCEEARKGCEPLMKKYSFTWPDVLNCEFLASNTKQNALCGSPPPS
KPTRKTPQTEVVPTAPPAWVKVVEQFPKVDHKRFKYPERPIIFLSFCYNL
YSIGYLIRVFGNYENIVCENSPQGQHALIDGMSSTSCAIVFFLLYFFGMA
SALWWVVLSVTWFLAAALKWGHEAIEKYSSLFHAVAWTVPTIQTIIALVT
RKVDTDMLAGVCYIGATNSENLLMFVALPLLIYLLIGTLFLIMGFVALIK
IRKELQRERNTNKLERLIIRIGIFSVLYSVPASIVVGCFIHEYNRLKRTE
QVSQDMLSCLKDPNCEKDLKPRTEIFYLRYFMLLVVGVTSGVWIWTSKTF
DSWKNFYRRRFPEKSSKQEEEKERLYKNSFAPTTSNLQSAHAPPRRRSSN
EALNQYTPASTVASHPAIAIQPGMYAQPATNFFFPIQQHPAVMQAHNLPV
SQAKIVDSSSRGFTVTPSSNMTSDYEHNEVFNNYENKLIQNGHDMMHRQA
NYAPSSSSEHYTASLPRNGRPLDPPASPKSMSSRSHYSNEAKM
Run BLAST on NCBI

transcript from alignment at sc0000321:274378..276814+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019225 ID=TCONS_00019225|Name=TCONS_00019225|organism=Clytia hemisphaerica|type=transcript|length=2437bp|location=Sequence derived from alignment at sc0000321:274378..276814+ (Clytia hemisphaerica)
CCTTGACACTAATCTACTTCCAttttaattgaattttcagaatctagaat agagaaaaaaaagacaaaaaaattctGTTATAAAACATCAAACAAACGAC TCAAGAATCTTATCACAAACATTCGCGAGCTCTCTGGAAGGAGCAGTGAT GCTGCCTAACGTTATCAAACTTACCTTTGCCCTTACCTTCTTTTTGGTTG GCACGGGAGGCGCACGACAGCGTGAACGATGCGTACCGCTTATTAACGAC CATTGTAAAGATCTTGGATACAACGCTACTTTGATTCCGAACGTTAAAGC TGGGATTGATAAACTGGATGAAGCTGCTAGGAGAATCAGTGAATTTTCAC CGTTATTTCAAGTGAATTGTtacgaaaatttcaagttttttattTGCAAC ATGTTTCTACCGGTTTGTCATTCGATTAATGGAAACCCGACCCCCGTCTA TCCATGTCGTCATGTTTGTGAGGAGGCGAGAAAAGGTTGTGAACCTCTGA TGAAGAAATATAGTTTCACATGGCCCGATGTTTTGAATTGCGAATTCCTG GCTAGTAACACGAAACAAAACGCCCTATGTGGTAGTCCACCGCCTTCCAA GCCCACCCGCAAAACGCCACAAACTGAAGTTGTACCCACTGCCCCACCAG CATGGGTCAAAGTGGTTGAACAATTTCCAAAAGGTATAGACGTTAAAGTG TTACAAAGTAAAGAGAATCTAGCCTTGATCAGCACTTTATTCAAAACCGA TCGAGTGACTTTTAAATCGGTTTGTAAGTTACTACCTAACTcgatttatt tgaaaaaaactgaGAGTGAAACCTGTGTATCAAAGTGCGAGGCAACTTCG CCATTCACAAAAGAGAACAAGAAATTCGCTTCAGTATGGGTGTCAACTTG GTCCATCATTTGTTTCCTCTCAACTCTGGTCACCGTAACGACTTTCTTAG TCGATCACAAACGTTTCAAGTATCCTGAACGACCTATCATTTTCCTATCC TTCTGTTACAACTTATACTCGATTGGATACCTCATCCGGGTTTTTGGCAA CTACGAAAACATCGTATGTGAGAACTCACCGCAAGGTCAACACGCTTTGA TAGATGGGATGTCGTCTACATCGTGCGCCATTGTTTTCTTCCTTCTCTAT TTCTTTGGAATGGCATCTGCTTTGTGGTGGGTTGTCTTATCAGTTACCTG GTTTCTAGCTGCCGCTCTCAAGTGGGGACACGAAGCGATCGAAAAGTATT CGTCACTTTTCCACGCGGTCGCCTGGACTGTACCGACTATACAAACTATT ATCGCGCTGGTGACTCGTAAAGTAGACACTGATATGTTGGCAGGTGTTTG TTATATAGGAGCAACCAACAGTGAGAATTTATTAATGTTTGTGGCGTTAC CGTTGCTTATCTATTTACTCATCGGAACACTTTTTCTCATCATGGGATTT GTGGCTTTGATCAAGATCCGGAAAGAACTGCAACGAGAACGTAACACGAA CAAATTGGAACGTTTGATCATTCGAATCGGCATTTTCTCCGTCCTCTACT CCGTACCCGCCTCAATCGTGGTCGGATGTTTTATACACGAGTATAACCGA TTGAAACGTACCGAGCAAGTGTCACAAGACATGTTATCTTGTCTTAAAGA TCCAAATTGTGAAAAGGATTTGAAACCGCGCACCGAGATTTTCTACTTAC GTTATTTCATGTTGTTGGTTGTCGGTGTAACAAGCGGTGTGTGGATTTGG ACATCCAAGACATTCGATTCGTGGAAGAATTTCTACCGACGACGTTTTCC TGAGAAATCGAGTAAACAAGAAGAGGAAAAGGAACgtctttataagaact cttttgCACCAACCACTTCCAATCTCCAATCTGCCCATGCTCCGCCACGC AGAAGATCCTCAAACGAAGCCTTAAATCAATACACGCCCGCCAGTACGGT TGCTTCACACCCCGCTATCGCCATCCAACCAGGAATGTACGCACAGCCTG caactaatttcttttttcctatCCAGCAACATCCGGCCGTCATGCAAGCA CACAATCTACCCGTATCACAAGCTAAAATTGTTGATTCAAGTTCGCGCGG TTTTACAGTCACACCTTCGTCAAATATGACATCAGATTATGAACATAACG AAGTATttaataattatgaaaacaaacttATTCAAAATGGACATGATATG ATGCATAGACAAGCAAACTATGCTCCAAGTAGCTCTTCAGAGCATTATAC TGCTAGTCTACCTCGTAATGGTCGACCATTGGACCCTCCGGCTTCGCCGA AAAGTATGTCCAGTCGTTCGCATTACTCGAACGAAGccaaaatgtgaaaa tatttagggtTAGTTTCATATTTCTATTAGCTAACAAATTGTGTACaaat tattttggttgccaGTGCTTTGAACGTCACTCTAAGA

Coding sequence (CDS) from alignment at sc0000321:274378..276814+

>TCONS_00019225 ID=TCONS_00019225|Name=TCONS_00019225|organism=Clytia hemisphaerica|type=CDS|length=3864bp|location=Sequence derived from alignment at sc0000321:274378..276814+ (Clytia hemisphaerica)
ATGCTGCCTAACGTTATCAAACTTACCTTTGCCCTTACCTTCTTTTTGGT
TGGCACGGGAGGCGCACGACAGCGTGAACGATGCGTACCGCTTATTAACG
ACCATTGTAAAGATCTTGGATACAACGCTACTTTGATTCCGAACGTTAAA
GCTGGGATTGATAAACTGGATGAAGCTGCTAGGAGAATCAGTGAATTTTC
ACCGTTATTTCAAGTGAATTGTtacgaaaatttcaagttttttattTGCA
ACATGTTTCTACCGGTTTGTCATTCGATTAATGGAAACCCGACCCCCGTC
TATCCATGTCGTCATGTTTGTGAGGAGGCGAGAAAAGGTTGTGAACCTCT
GATGAAGAAATATAGTTTCACATGGCCCGATGTTTTGAATTGCGAATTCC
TGGCTAGTAACACGAAACAAAACGCCCTATGTGGTAGTCCACCGCCTTCC
AAGCCCACCCGCAAAACGCCACAAACTGAAGTTGTACCCACTGCCCCACC
AGCATGGGTCAAAGTGGTTGAACAATTTCCAAAAGTCGATCACAAACGTT
TCAAGTATCCTGAACGACCTATCATTTTCCTATCCTTCTGTTACAACTTA
TACTCGATTGGATACCTCATCCGGGTTTTTGGCAACTACGAAAACATCGT
ATGTGAGAACTCACCGCAAGGTCAACACGCTTTGATAGATGGGATGTCGT
CTACATCGTGCGCCATTGTTTTCTTCCTTCTCTATTTCTTTGGAATGGCA
TCTGCTTTGTGGTGGGTTGTCTTATCAGTTACCTGGTTTCTAGCTGCCGC
TCTCAAGTGGGGACACGAAGCGATCGAAAAGTATTCGTCACTTTTCCACG
CGGTCGCCTGGACTGTACCGACTATACAAACTATTATCGCGCTGGTGACT
CGTAAAGTAGACACTGATATGTTGGCAGGTGTTTGTTATATAGGAGCAAC
CAACAGTGAGAATTTATTAATGTTTGTGGCGTTACCGTTGCTTATCTATT
TACTCATCGGAACACTTTTTCTCATCATGGGATTTGTGGCTTTGATCAAG
ATCCGGAAAGAACTGCAACGAGAACGTAACACGAACAAATTGGAACGTTT
GATCATTCGAATCGGCATTTTCTCCGTCCTCTACTCCGTACCCGCCTCAA
TCGTGGTCGGATGTTTTATACACGAGTATAACCGATTGAAACGTACCGAG
CAAGTGTCACAAGACATGTTATCTTGTCTTAAAGATCCAAATTGTGAAAA
GGATTTGAAACCGCGCACCGAGATTTTCTACTTACGTTATTTCATGTTGT
TGGTTGTCGGTGTAACAAGCGGTGTGTGGATTTGGACATCCAAGACATTC
GATTCGTGGAAGAATTTCTACCGACGACGTTTTCCTGAGAAATCGAGTAA
ACAAGAAGAGGAAAAGGAACgtctttataagaactcttttgCACCAACCA
CTTCCAATCTCCAATCTGCCCATGCTCCGCCACGCAGAAGATCCTCAAAC
GAAGCCTTAAATCAATACACGCCCGCCAGTACGGTTGCTTCACACCCCGC
TATCGCCATCCAACCAGGAATGTACGCACAGCCTGcaactaatttctttt
ttcctatCCAGCAACATCCGGCCGTCATGCAAGCACACAATCTACCCGTA
TCACAAGCTAAAATTGTTGATTCAAGTTCGCGCGGTTTTACAGTCACACC
TTCGTCAAATATGACATCAGATTATGAACATAACGAAGTATttaataatt
atgaaaacaaacttATTCAAAATGGACATGATATGATGCATAGACAAGCA
AACTATGCTCCAAGTAGCTCTTCAGAGCATTATACTGCTAGTCTACCTCG
TAATGGTCGACCATTGGACCCTCCGGCTTCGCCGAAAAGTATGTCCAGTC
GTTCGCATTACTCGAACGAAGccaaaatgtgaATGCTGCCTAACGTTATC
AAACTTACCTTTGCCCTTACCTTCTTTTTGGTTGGCACGGGAGGCGCACG
ACAGCGTGAACGATGCGTACCGCTTATTAACGACCATTGTAAAGATCTTG
GATACAACGCTACTTTGATTCCGAACGTTAAAGCTGGGATTGATAAACTG
GATGAAGCTGCTAGGAGAATCAGTGAATTTTCACCGTTATTTCAAGTGAA
TTGTtacgaaaatttcaagttttttattTGCAACATGTTTCTACCGGTTT
GTCATTCGATTAATGGAAACCCGACCCCCGTCTATCCATGTCGTCATGTT
TGTGAGGAGGCGAGAAAAGGTTGTGAACCTCTGATGAAGAAATATAGTTT
CACATGGCCCGATGTTTTGAATTGCGAATTCCTGGCTAGTAACACGAAAC
AAAACGCCCTATGTGGTAGTCCACCGCCTTCCAAGCCCACCCGCAAAACG
CCACAAACTGAAGTTGTACCCACTGCCCCACCAGCATGGGTCAAAGTGGT
TGAACAATTTCCAAAAGTCGATCACAAACGTTTCAAGTATCCTGAACGAC
CTATCATTTTCCTATCCTTCTGTTACAACTTATACTCGATTGGATACCTC
ATCCGGGTTTTTGGCAACTACGAAAACATCGTATGTGAGAACTCACCGCA
AGGTCAACACGCTTTGATAGATGGGATGTCGTCTACATCGTGCGCCATTG
TTTTCTTCCTTCTCTATTTCTTTGGAATGGCATCTGCTTTGTGGTGGGTT
GTCTTATCAGTTACCTGGTTTCTAGCTGCCGCTCTCAAGTGGGGACACGA
AGCGATCGAAAAGTATTCGTCACTTTTCCACGCGGTCGCCTGGACTGTAC
CGACTATACAAACTATTATCGCGCTGGTGACTCGTAAAGTAGACACTGAT
ATGTTGGCAGGTGTTTGTTATATAGGAGCAACCAACAGTGAGAATTTATT
AATGTTTGTGGCGTTACCGTTGCTTATCTATTTACTCATCGGAACACTTT
TTCTCATCATGGGATTTGTGGCTTTGATCAAGATCCGGAAAGAACTGCAA
CGAGAACGTAACACGAACAAATTGGAACGTTTGATCATTCGAATCGGCAT
TTTCTCCGTCCTCTACTCCGTACCCGCCTCAATCGTGGTCGGATGTTTTA
TACACGAGTATAACCGATTGAAACGTACCGAGCAAGTGTCACAAGACATG
TTATCTTGTCTTAAAGATCCAAATTGTGAAAAGGATTTGAAACCGCGCAC
CGAGATTTTCTACTTACGTTATTTCATGTTGTTGGTTGTCGGTGTAACAA
GCGGTGTGTGGATTTGGACATCCAAGACATTCGATTCGTGGAAGAATTTC
TACCGACGACGTTTTCCTGAGAAATCGAGTAAACAAGAAGAGGAAAAGGA
ACgtctttataagaactcttttgCACCAACCACTTCCAATCTCCAATCTG
CCCATGCTCCGCCACGCAGAAGATCCTCAAACGAAGCCTTAAATCAATAC
ACGCCCGCCAGTACGGTTGCTTCACACCCCGCTATCGCCATCCAACCAGG
AATGTACGCACAGCCTGcaactaatttcttttttcctatCCAGCAACATC
CGGCCGTCATGCAAGCACACAATCTACCCGTATCACAAGCTAAAATTGTT
GATTCAAGTTCGCGCGGTTTTACAGTCACACCTTCGTCAAATATGACATC
AGATTATGAACATAACGAAGTATttaataattatgaaaacaaacttATTC
AAAATGGACATGATATGATGCATAGACAAGCAAACTATGCTCCAAGTAGC
TCTTCAGAGCATTATACTGCTAGTCTACCTCGTAATGGTCGACCATTGGA
CCCTCCGGCTTCGCCGAAAAGTATGTCCAGTCGTTCGCATTACTCGAACG
AAGccaaaatgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010791XLOC_010791Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
frizzled receptor 3TCONS_00019225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019225-exon-sc0000321-1491911889:274378..275060TCONS_00019225-exon-sc0000321-1491911889:274378..275060Clytia hemisphaericaexon
TCONS_00019225-exon-sc0000321-1510915933:274378..275060TCONS_00019225-exon-sc0000321-1510915933:274378..275060Clytia hemisphaericaexon
TCONS_00019225-exon-sc0000321-1575043694:274378..275060TCONS_00019225-exon-sc0000321-1575043694:274378..275060Clytia hemisphaericaexon
TCONS_00019225-exon-sc0000321-1491911889:275328..276814TCONS_00019225-exon-sc0000321-1491911889:275328..276814Clytia hemisphaericaexon
TCONS_00019225-exon-sc0000321-1510915933:275328..276814TCONS_00019225-exon-sc0000321-1510915933:275328..276814Clytia hemisphaericaexon
TCONS_00019225-exon-sc0000321-1575043694:275328..276814TCONS_00019225-exon-sc0000321-1575043694:275328..276814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:274378..276814 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1488 9.94631 70.6159 94.1402 189.787 152.394 95.8751 110.9 62.5133 66.605 59.486 54.1013 6.23909 3.48904 1.83672 2.91017 11.1781 10.6795 9.80337 8.96063 9.71974 9.76655 29.278 30.2824 5.046 6.94609 3.85054 3.25131 22.0958 28.1437
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000539Frizzled
IPR020067Frizzled_dom
IPR017981GPCR_2-like
Vocabulary: Biological Process
TermDefinition
GO:0007166cell surface receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004888transmembrane signaling receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
BLAST of TCONS_00019225 vs. Swiss-Prot (Human)
Match: FZD10 (Frizzled-10 OS=Homo sapiens GN=FZD10 PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 2.191e-82
Identity = 145/290 (50.00%), Postives = 195/290 (67.24%), Query Frame = 2
Query:  683 VDHKRFKYPERPIIFLSFCYNLYSIGYLIRVFGNYENIVCENSPQGQHALIDGMSSTSCAIVFFLLYFFGMASALWWVVLSVTWFLAAALKWGHEAIEKYSSLFHAVAWTVPTIQTIIALVTRKVDTDMLAGVCYIGATNSENLLMFVAXXXXXXXXXXXXXXXMGFVALIKIRKELQR-ERNTNKLERLIIRIGIFSVLYSVPASIVVGCFIHE------------YNRLKRTEQVSQDMLSCLKDPNCEKDLKPRTEIFYLRYFMLLVVGVTSGVWIWTSKTFDSWKN 1513
            +D  RF+YPERPIIFLS CY +YS+GYLIR+F   E+I C+      + + +G+ ST C +VF +LY+FGMAS+LWWVVL++TWFLAA  KWGHEAIE  SS FH  AW +P ++TI+ LV R+V  D L GVCY+G+ +   L  FV +PL  YL+IGT F++ GFVAL  IR+ ++    NT+KLE+L++RIG+FSVLY+VPA+ V+ C+ +E             ++ K   Q     L CL   +      P  EIF ++ FMLLVVG+TSG+WIWTSKT  SW+ 
Sbjct:  251 IDPARFRYPERPIIFLSMCYCVYSVGYLIRLFAGAESIACDRDSGQLYVIQEGLESTGCTLVFLVLYYFGMASSLWWVVLTLTWFLAAGKKWGHEAIEANSSYFHLAAWAIPAVKTILILVMRRVAGDELTGVCYVGSMDVNALTGFVLIPLACYLVIGTSFILSGFVALFHIRRVMKTGGENTDKLEKLMVRIGLFSVLYTVPATCVIACYFYERLNMDYWKILAAQHKCKMNNQTKT--LDCLMAASI-----PAVEIFMVKIFMLLVVGITSGMWIWTSKTLQSWQQ 533          

HSP 2 Score: 103.605 bits (257), Expect = 7.135e-23
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  227 RCVPLINDHCKDLGYNATLIPNVKAGIDKLDEAARRISEFSPLFQVNCYENFKFFICNMFLPVCHSINGNPTPVYPCRHVCEEARKGCEPLMKKYSFTWPDVLNCEFLASNTKQNALC 580
            +C P+    CKD+GYN T +PN+  G +   EAA ++ EF+PL +  C+ + +FF+C+++ P+C      P P   CR +CE+AR  C P+M++++F WPD L+C  L +    N LC
Sbjct:   33 KCQPIEIPMCKDIGYNMTRMPNL-MGHENQREAAIQLHEFAPLVEYGCHGHLRFFLCSLYAPMCTEQVSTPIPA--CRVMCEQARLKCSPIMEQFNFKWPDSLDCRKLPNKNDPNYLC 147          
The following BLAST results are available for this feature:
BLAST of TCONS_00019225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FZD102.191e-8250.00Frizzled-10 OS=Homo sapiens GN=FZD10 PE=1 SV=1[more]
back to top