TCONS_00019230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019230
Unique NameTCONS_00019230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019230 ID=TCONS_00019230|Name=TCONS_00019230|organism=Clytia hemisphaerica|type=transcript|length=2894bp
CGGACGAGAATATAATATTTTGAATTGGAGtCGCCATCACTGTGTCCACC
GTCCGAAAACAAACAAACCAAGCGGCCCATGTGCTTTATCCGAATACAAA
GAAACATATCGCAAATTTGACAACTATGCACCACAAAAACCCATCAAACC
AGATTCTGCTACCAAAAGGAGTGATGTCCCACTCGATGCTAGAACATTAT
ACGAATTAGAGTATACAAAACATCCATTAGAAGCACGTAAGAAACGAGAA
CAGGCTAAATATGTCAAGCCTGGAGGAAATTTTGATGGCACCTCAAGCTA
CCAACATGATTATACTGAGAAATCtgctgaaaaaatgaaatcagctCGAC
CACCTTACCAACCAGCTACATCAGACCGTCCTTTCAGTGGAACGACCGTT
CATCAAGAAACATACAAACCGTGGGAAGTTCCATTTACCCAGGGTATTCG
TCATCAATCAGCTATCAAATTACCATCAGGAAAATTTGACCATAAAACCA
CTTTCCAAAAAGATTTTACTGGATATCCAGGACACGCTGGTCGACAACCC
ATCATACCAAAAGGCCCAACTCTTTCGATGGGTGCTGGTAAATTCTCAGA
TGAAACCACCACCCGTCGTGATTACACACCCAAGGATGCCCGCCCTGAGA
AATCAGCCAGACCACCCCAATATGTGCTTCACAATACAGACCCATTTGAT
CATAAAACCACATTCCAACATAACTTTCCATGGCCTAAGGGACATCCAGC
TGAAAGTTGTAAACCACAACAGATGGTAAGACGCTCCAGTATGCCATTAG
ATGGGCTAACAACTCATAACATGACCTATAAGCCTTGGGAAGTTGCTAAG
ACAAAAGGCTGGAAACCTAAATCTGGTTGGGTACCACCCCAAGATCCATT
CGATGCTAAGACCACCTTCCAACATGATTATGATGGCAAATCGTCATCAC
CAGCTCGAAGCATGCGTCCTTACTATAACCGAATGGAGCCAGGAGAATTT
GCAGATCGAACAACGCATAAAGATGCGTTTAAACCATGGGAAGTGAATGC
ACGTCAAAGCTGCAAACCAAAGGAAGCATACAGCCCGCATGGTAAGTTTG
ATGGGTCTACCACTTTCCAAACCGATTTCAAAGGACGACAAGGTGATCGT
CGCGATCTATGTATCCCTAAAGGTAGTGGATTGGCTTTCCAAGGTCCCCA
AGATTTCTCTACCATGTATGGTAATACCTTCTTGGGTGAGAGACCGCCTT
CATGCCCAGCCAAATATTTGGAGACGCGTAGAAATACGGCTTCACGTAAT
GGTTATGTTTTCAAACAGGATAATAATGGACATCAGTTCTTTAAGCCTCC
ATACGTTCGTGAATCGGTGGAACATATACCAACCTCACCTTCACAAGATC
TAAGGCTTACTAAGTCCTTAGAGGTTTTATCAATGTGAGAAAGGTGTTAT
TGTTTGGGAGATGTGGACTGTTAAATTGGTAGGGACAAGATCCCTTGTGG
AACTCCCTTTAATGGAGATTCTAAAACTCAGATGCCAGCATTTGGATTAC
CATAATAAAAAGGATATTGATTTTAATGATACTGATATAATGGAGAACTT
TTGGGAGCTAATTATGAATGGACAGTCTTGTTTGACTGGCGAAagcaaat
tttttaatttgacaaaatttttcatttagaattttttatgaCAATTGATT
ATGATTAATCTCtagtcattttttattttattgaattttttttgtcaaca
cTGTACATAAAGAATTTTTAAtccattttatcaaaataagaatcttttca
aactttaaaagggTGTTGAGTATTTTTAAGGAGAGATTGATTGTATCGGT
GGTTGTACAGGGTGTTCTTAAATTTGATCGATTTTCGGAATAAATGTTTT
CAACTNTGTACAGGGTGTTCTTAAATTTGATCGATTTTCGGAATAAATGT
TTTCAACTACGACAGTAGCTTATTGATTAATCCCGAATAAGAAGTGTCTG
TTGATTGTTATTGGAGTATGAGTCAATTCATAATTTCAATACAAACTTTT
TTAACAGTATCCTTGGAAGCACTTTTAAGACAATATACGGAAATTtagat
aatattttttaatattttgacacAAATTATATATCCTATATTTTAGTTTT
GTCCACTTTAATTTGACTCGTGCTTTCCTATAATTTTAGAGATGTTTAAT
TACTCTGAAAATTATATTataatgaattttttaaataggAAATTTTAGCA
CACGGTACTTGATACATCATTGTGCATTTTGCCAACAAACGTACGAacta
ttttgaatttcaaattatGTTTTTACCGTATATGATATGCACTTTTGCAA
GATAATTTCTATACATGTTTCACTTTTAAATGCACCGTTTATAATTCTTT
TGTGTGTCCAATCATAAAAAATACCTCTttgaattgagatttttttgtaa
aattcaatTTATTCTAATTAATCTTACAATTTTTCTGGAAAGGACTTCTG
TAGTCCCCAAAAATTGTCGGTAAAATATGAAACATTTGCTGTGTAAATTC
CATTTTCCGAGTTCtgtatttaaaattttaattcagAGAGTTCAACTTTA
CATCTAGGGACACAAGAATTAAAATTGTATATTATATTTGACACATAATT
TAtcgtaatattttattttcttagggAGAACCATCATACAACACCACCAC
GACTaaaatagaaattatatttttctaagaaaaaaaattgtgcaCACACT
ATCAACACCACTACTTTGTAAAAAGATATGCTTCAATCTATGAAAATACA
CAATAATGAATACGAAAATTGATTTGTACTCTCTTTCTGTACTTTTATAC
CTCTCCCTACTATTTATGTAATAGTTAttggacagttgcgagta
Run BLAST on NCBI

transcript from alignment at sc0000321:338043..341389+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019230 ID=TCONS_00019230|Name=TCONS_00019230|organism=Clytia hemisphaerica|type=transcript|length=3347bp|location=Sequence derived from alignment at sc0000321:338043..341389+ (Clytia hemisphaerica)
CGGACGAGAATATAATATTTTGAATTGGAGGTATTTAATTTCAATAAGTT
TGTACATTCAAAGTGATGAAGTGTTCTCTTAAGACTGACAACAATGTGTC
CGAAAATAAGTGGACAAATGTTTatgtaaagtaaaatcctcataatCACT
AGCGATAGTCATGAGTTAAAAATCTACCAGTTGACACACAAGTGATTCAC
ACTTTTGTAAATCAAGTCGAAATTCACTTTTTGCTTTATGTAAAAttccg
agaaaaaaaatcaaaagcttGTTACCTATGAAgcaagttgaaaaatatta
caaaccaaatttaattttacctTTCTTGTTTCCATTTAATTAAGCGCTGA
ACCTTAAAGCAGAGTTATGTGAAGTACAAAGTTTTTTACAAGACCTAGCC
AGAGATTGAAAATACCACCTGAGTACCCTAGTACTATTTACTCACCagtt
agaaatttaaaatttaatttgatttctttttagtCGCCATCACTGTGTCC
ACCGTCCGAAAACAAACAAACCAAGCGGCCCATGTGCTTTATCCGAATAC
AAAGAAACATATCGCAAATTTGACAACTATGCACCACAAAAACCCATCAA
ACCAGATTCTGCTACCAAAAGGAGTGATGTCCCACTCGATGCTAGAACAT
TATACGAATTAGAGTATACAAAACATCCATTAGAAGCACGTAAGAAACGA
GAACAGGCTAAATATGTCAAGCCTGGAGGAAATTTTGATGGCACCTCAAG
CTACCAACATGATTATACTGAGAAATCtgctgaaaaaatgaaatcagctC
GACCACCTTACCAACCAGCTACATCAGACCGTCCTTTCAGTGGAACGACC
GTTCATCAAGAAACATACAAACCGTGGGAAGTTCCATTTACCCAGGGTAT
TCGTCATCAATCAGCTATCAAATTACCATCAGGAAAATTTGACCATAAAA
CCACTTTCCAAAAAGATTTTACTGGATATCCAGGACACGCTGGTCGACAA
CCCATCATACCAAAAGGCCCAACTCTTTCGATGGGTGCTGGTAAATTCTC
AGATGAAACCACCACCCGTCGTGATTACACACCCAAGGATGCCCGCCCTG
AGAAATCAGCCAGACCACCCCAATATGTGCTTCACAATACAGACCCATTT
GATCATAAAACCACATTCCAACATAACTTTCCATGGCCTAAGGGACATCC
AGCTGAAAGTTGTAAACCACAACAGATGGTAAGACGCTCCAGTATGCCAT
TAGATGGGCTAACAACTCATAACATGACCTATAAGCCTTGGGAAGTTGCT
AAGACAAAAGGCTGGAAACCTAAATCTGGTTGGGTACCACCCCAAGATCC
ATTCGATGCTAAGACCACCTTCCAACATGATTATGATGGCAAATCGTCAT
CACCAGCTCGAAGCATGCGTCCTTACTATAACCGAATGGAGCCAGGAGAA
TTTGCAGATCGAACAACGCATAAAGATGCGTTTAAACCATGGGAAGTGAA
TGCACGTCAAAGCTGCAAACCAAAGGAAGCATACAGCCCGCATGGTAAGT
TTGATGGGTCTACCACTTTCCAAACCGATTTCAAAGGACGACAAGGTGAT
CGTCGCGATCTATGTATCCCTAAAGGTAGTGGATTGGCTTTCCAAGGTCC
CCAAGATTTCTCTACCATGTATGGTAATACCTTCTTGGGTGAGAGACCGC
CTTCATGCCCAGCCAAATATTTGGAGACGCGTAGAAATACGGCTTCACGT
AATGGTTATGTTTTCAAACAGGATAATAATGGACATCAGTTCTTTAAGCC
TCCATACGTTCGTGAATCGGTGGAACATATACCAACCTCACCTTCACAAG
ATCTAAGGCTTACTAAGTCCTTAGAGGTTTTATCAATGTGAGAAAGGTGT
TATTGTTTGGGAGATGTGGACTGTTAAATTGGTAGGGACAAGATCCCTTG
TGGAACTCCCTTTAATGGAGATTCTAAAACTCAGATGCCAGCATTTGGAT
TACCATAATAAAAAGGATATTGATTTTAATGATACTGATATAATGGAGAA
CTTTTGGGAGCTAATTATGAATGGACAGTCTTGTTTGACTGGCGAAagca
aattttttaatttgacaaaatttttcatttagaattttttatgaCAATTG
ATTATGATTAATCTCtagtcattttttattttattgaattttttttgtca
acacTGTACATAAAGAATTTTTAAtccattttatcaaaataagaatcttt
tcaaactttaaaagggTGTTGAGTATTTTTAAGGAGAGATTGATTGTATC
GGTGGTTGTACAGGGTGTTCTTAAATTTGATCGATTTTCGGAATAAATGT
TTTCAACTNTGTACAGGGTGTTCTTAAATTTGATCGATTTTCGGAATAAA
TGTTTTCAACTACGACAGTAGCTTATTGATTAATCCCGAATAAGAAGTGT
CTGTTGATTGTTATTGGAGTATGAGTCAATTCATAATTTCAATACAAACT
TTTTTAACAGTATCCTTGGAAGCACTTTTAAGACAATATACGGAAATTta
gataatattttttaatattttgacacAAATTATATATCCTATATTTTAGT
TTTGTCCACTTTAATTTGACTCGTGCTTTCCTATAATTTTAGAGATGTTT
AATTACTCTGAAAATTATATTataatgaattttttaaataggAAATTTTA
GCACACGGTACTTGATACATCATTGTGCATTTTGCCAACAAACGTACGAa
ctattttgaatttcaaattatGTTTTTACCGTATATGATATGCACTTTTG
CAAGATAATTTCTATACATGTTTCACTTTTAAATGCACCGTTTATAATTC
TTTTGTGTGTCCAATCATAAAAAATACCTCTttgaattgagatttttttg
taaaattcaatTTATTCTAATTAATCTTACAATTTTTCTGGAAAGGACTT
CTGTAGTCCCCAAAAATTGTCGGTAAAATATGAAACATTTGCTGTGTAAA
TTCCATTTTCCGAGTTCtgtatttaaaattttaattcagAGAGTTCAACT
TTACATCTAGGGACACAAGAATTAAAATTGTATATTATATTTGACACATA
ATTTAtcgtaatattttattttcttagggAGAACCATCATACAACACCAC
CACGACTaaaatagaaattatatttttctaagaaaaaaaattgtgcaCAC
ACTATCAACACCACTACTTTGTAAAAAGATATGCTTCAATCTATGAAAAT
ACACAATAATGAATACGAAAATTGATTTGTACTCTCTTTCTGTACTTTTA
TACCTCTCCCTACTATTTATGTAATAGTTAttggacagttgcgagta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010794XLOC_010794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019230-exon-sc0000321-1491911889:338043..338072TCONS_00019230-exon-sc0000321-1491911889:338043..338072Clytia hemisphaericaexon
TCONS_00019230-exon-sc0000321-1510915933:338043..338072TCONS_00019230-exon-sc0000321-1510915933:338043..338072Clytia hemisphaericaexon
TCONS_00019230-exon-sc0000321-1575043694:338043..338072TCONS_00019230-exon-sc0000321-1575043694:338043..338072Clytia hemisphaericaexon
TCONS_00019230-exon-sc0000321-1491911889:338526..341389TCONS_00019230-exon-sc0000321-1491911889:338526..341389Clytia hemisphaericaexon
TCONS_00019230-exon-sc0000321-1510915933:338526..341389TCONS_00019230-exon-sc0000321-1510915933:338526..341389Clytia hemisphaericaexon
TCONS_00019230-exon-sc0000321-1575043694:338526..341389TCONS_00019230-exon-sc0000321-1575043694:338526..341389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:338043..341389 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.3157e-05	2.33937e-05	7.89885e-06	7.57947e-06	7.85847e-07	1.26313	0.737986	0.659366	0.624837	6.29128e-08	2.38219e-10	2.12274e-07	7.54282e-07	2.77566	1.34431e-05	2.63261	0.9282	0	0	2.05289	3.62268e-05	1.17029e-05	8.30554e-06	1.3086e-05	0	1.35023e-06
Blast
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BLAST of TCONS_00019230 vs. Swiss-Prot (Human)
Match: SAXO1 (Stabilizer of axonemal microtubules 1 OS=Homo sapiens GN=SAXO1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 9.706e-28
Identity = 123/460 (26.74%), Postives = 188/460 (40.87%), Query Frame = 2 
Query:   17 ILNWSRHHCVHRPKT--NKPSGPCALSEYKETYRKFDNYAPQKPIKPDSATKRSDVPLDARTLYELEYTKHPLEARKKREQAKYVKPGGNFDGTSSYQHDYTEKSAEKMKSARPPYQPATSDRPFSGTTVHQETYK----PWEVPFTQGIRHQSAIKLPSGKFDHKTTFQKDF--TGYPGHAGRQPI-IPKGPTLSMGAGKFSDETTTRRDYT--PKDARPEKSA---RPPQYVLHNTDPFDHKTTFQHNFPWPKGHPAESCKPQQMVRRSSMPLDGLTTHNMTYKPWEVAKTKGWKPKSGWVPPQDPFDAKTTFQHDYDGKSSSPARSMRPYYNRMEPGEFADRTTHKDAFKPWEVNARQSCKPKEAYS-PHGKFDGSTTFQTDFKGRQGDRRDLCIPKGSGLAFQGPQDFSTMYGNTFLGERPPSCPAKYLETRRNTASRNGYVFKQ-DNNGHQFFKP 1348
            + +  RHHC H P    +K   PC LSEY E Y  + +Y P++  KP    ++  +P++  T    ++  H +   K  +  ++V    N D  ++Y+ DY      ++     P +P  S  P S       TYK    PW  P  + +R +   +  S +FD++TT Q D+   G       +P+ +PK     +      D T  +  Y   P + R    A   RP +       PF+  TT + ++    G PA+S KP        MP    T     Y+ W + +     P + +VPP+D  D  TT Q  Y     +PA+S RP     + G F   +T KD +K W     +  KP      P    D  TT +  +          C P  SG     P +  T Y  +F  +    C A Y E         GY F++ D  GH+ +KP
Sbjct:    9 LCSCGRHHCPHLPTKIYDKTEKPCLLSEYTENYPFYHSYLPRESFKPRREYQKGPIPMEGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTTYKKDYNPYPVCRVD----PIKPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIKGLVKTISCKPLAMPK-----LCNIPLEDVTNYKMSYVAHPVEKRFVHEAEKFRPCEI------PFESLTTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPIT-YVPPEDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYPEP-------PGYTFEEVDALGHRIYKP 445
The following BLAST results are available for this feature:
BLAST of TCONS_00019230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAXO19.706e-2826.74Stabilizer of axonemal microtubules 1 OS=Homo sapi... [more]
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