TCONS_00019252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019252
Unique NameTCONS_00019252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019252 ID=TCONS_00019252|Name=TCONS_00019252|organism=Clytia hemisphaerica|type=transcript|length=334bp
CAAATTcgataatttcaattttcttaacaaAAACATAAATTGGGAAGCca
taaacaaagatttacaaTGTATTGACTGGCGTACAACTTTGCACTCAACC
TCAGACCCAGAGAAACAATAtgaaacttttattgataagtGTATATCAGT
TATTTCAGCAAACAAAGTACCAGCTCGAAAACCaaatcattcttataaaa
taatccCAAGAGACAGACGTGTTTTAATGCGTAAtagatcaaaattgaaa
aaaaggcaTCGAACGAACAAAATCGCACAGAAACTTATCGATATTGAACT
CAAGCTTCAACAGTCACACATAAATGAAAGACAA
Run BLAST on NCBI

protein sequence of TCONS_00019252-protein

>TCONS_00019252-protein ID=TCONS_00019252-protein|Name=TCONS_00019252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
KFDNFNFLNKNINWEAINKDLQCIDWRTTLHSTSDPEKQYETFIDKCISV
ISANKVPARKPNHSYKIIPRDRRVLMRNRSKLKKRHRTNKIAQKLIDIEL
KLQQSHINERQ
Run BLAST on NCBI

transcript from alignment at sc0000321:114168..114501

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019252 ID=TCONS_00019252|Name=TCONS_00019252|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at sc0000321:114168..114501 (Clytia hemisphaerica)
TTGTCTTTCATTTATGTGTGACTGTTGAAGCTTGAGTTCAATATCGATAA
GTTTCTGTGCGATTTTGTTCGTTCGAtgcctttttttcaattttgatcta
TTACGCATTAAAACACGTCTGTCTCTTGggattattttataagaatgatt
tGGTTTTCGAGCTGGTACTTTGTTTGCTGAAATAACTGATATACacttat
caataaaagtttcaTATTGTTTCTCTGGGTCTGAGGTTGAGTGCAAAGTT
GTACGCCAGTCAATACAttgtaaatctttgtttatgGCTTCCCAATTTAT
GTTTttgttaagaaaattgaaattatcgAATTTG

Coding sequence (CDS) from alignment at sc0000321:114168..114501

>TCONS_00019252 ID=TCONS_00019252|Name=TCONS_00019252|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000321:114168..114501 (Clytia hemisphaerica)
TTGTCTTTCATTTATGTGTGACTGTTGAAGCTTGAGTTCAATATCGATAA
GTTTCTGTGCGATTTTGTTCGTTCGAtgcctttttttcaattttgatcta
TTACGCATTAAAACACGTCTGTCTCTTGggattattttataagaatgatt
tGGTTTTCGAGCTGGTACTTTGTTTGCTGAAATAACTGATATACacttat
caataaaagtttcaTATTGTTTCTCTGGGTCTGAGGTTGAGTGCAAAGTT
GTACGCCAGTCAATACAttgtaaatctttgtttatgGCTTCCCAATTTAT
GTTTttgttaagaaaattgaaattatcgAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010805XLOC_010805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019252-exon-sc0000321-1491911889:114168..114501TCONS_00019252-exon-sc0000321-1491911889:114168..114501Clytia hemisphaericaexon
TCONS_00019252-exon-sc0000321-1510915933:114168..114501TCONS_00019252-exon-sc0000321-1510915933:114168..114501Clytia hemisphaericaexon
TCONS_00019252-exon-sc0000321-1575043694:114168..114501TCONS_00019252-exon-sc0000321-1575043694:114168..114501Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019252-proteinTCONS_00019252-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000321supercontigsc0000321:114168..114501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.646137	2.21413	2.49263	1.65532	0.460512	0.325674	2.55424	1.4371	1.19584	0	1.15018	0.433992	1.18081	1.45651	0.483482	0.17295	0.426121	0.43676	0.905111	4.01223	1.15579	1.08368	0.325419	0.295853	1.82833	2.14014	7.98247	5.65675	2.83513	1.44729
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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