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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019263 ID=TCONS_00019263|Name=TCONS_00019263|organism=Clytia hemisphaerica|type=transcript|length=1831bp
NCGTCATTCCAACTAAAAGTGAATTCGAAATGGAAGAAGCATTTATCCCT
GAACAAAACCGACTCATCAACATTGTACCAGTTCAAGGAAAAGAATGGAG
GGTTACCCTGGAAGTCATTGTTCATCAGGGGTCTGGAGTTGAGTATAATG
AAATATTCCGAATGACATCCGACCCGTCGGAGTCTTATGGACCAGCAAGA
CGTATTCCACTTATAACAACTCTGCCGAACAAAAACGAATTCGCGATGCA
TGTTCATAATGGCCAGatccaaaagtccaaaaatgtTCCTTTTCAATTGA
ACCAATGGTACAGTCTGGAGATCAATCATTATAGAATAGGTCCGAGAAGA
TCAATGATTATTTGGCATGCTGACGGGGTTGAGAAATATCGAGTCATGCA
AGATGCTGTACCAGAACTCACCAATGTTCATTGCTTCACTGCAGGCAATT
TCCAAAGACCAATAAAAGGCCAGATTCGAAATTTGAAGTTTGTTCAAGGT
CAAGAGAAACTCAAAGGGTTTTCTCCACAGTTCAATGGCATTATTGAGAC
CACTAGCACTTGGCCAAAAGAATGGTATGTGGAAATAAAGCTTGCAGTTC
ATTCACTTAATTCAAGAAACGTCCCCGGGAAAACACTGCCCGACACAAAC
GACAATATTTTCCATTTCACGTCTGGCACAAACATCAACGGGTACGGTTC
TCGATTCCCAGCACTTTGGACCAGAAATAGTGCACAACGCCTGGTTATTT
ATTTTGATCAGATGTTAGATGGTGGAGGCTACTATAGGGCAGCAAAGACA
TTTTCTTTAACAATTGGCCAAGTATATCATATAAGAATCGAGCACAAACT
AAAAGCGGGAGAAACGAATATCTATAAGTACAAAGTTCAGATCGATAATA
ATATCTATTATCATTTCGATTACAATCCACCTGAGCTTTCAACTATGAAC
GTTTATCTTGGAGACGTATGGTATAAACCAACTGATGCTACAATTTCATA
CTTTGATTATGGACCTTTATAAAAATGTCGTGGTCTTTTTTGAAACACAT
AAGCGAGTgtgtgagtgagtgagtgagtgagtgagtgagtgagtgagtga
gagagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagt
aagtgagtgagtgagtgagagAGAGAGTGAGAGAGAGTGAGAGAGTGAGA
GAgagagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtga
gtgagtgagtgagtgagtgagtgagtgagtgagtgagagAGAGAGTGAGA
GAGTgtgtgagtgagtgagtgagtgagagAGAGTGAGAGAGTGAGAGAga
gagtgagtgagtgagtgagtgagtgagagAGAAAGTGAGAGAGTGAGAGA
GTgagagtgagtgagtgagtgagtgagtgaatTATTTCTAGCAATAAGTG
GAGAATTTTCTTTCGAGAAGCTAAATCTCtgaaacttaaaatttagaaca
tttttgaggattttgatTATAGAATTCCACCTGATCACGCAACCAATAAT
TTTGAAGAACTTAGCAAGAGAGAAAGGAAAACCGACATTGGACATCAAAG
GGTGAATTTATATTCTTCTTCGTTCCTCTGCTTTAGCGTGGGCTATCGCC
AATTTACCATCAGAAATTTTTAGTTAAGTTTGAATTAGTGAATAGAAAGT
TGAGTGAATGTGTGAACCTAGGCCGGATTAGTAAGCGAAAGATGGGTATT
TTTTACTTTGGAGTGCTAAGGGAACGTTTAGTTAAGAAAAGTTGTTcgaa
tgataaaaataattcactCTCCCCCTTTTAG Run BLAST on NCBI transcript from alignment at sc0000323:183295..186586+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019263 ID=TCONS_00019263|Name=TCONS_00019263|organism=Clytia hemisphaerica|type=transcript|length=3292bp|location=Sequence derived from alignment at sc0000323:183295..186586+ (Clytia hemisphaerica)
NCGTCATTCCAACTAAAAGTGAATTCGAAATGGAAGAAGGTTTGTTGACC
ACTTTATTGCTTCGAATTTTTATTAAGTAAATCTAAAGCTGTTTTTACAA
CCAGATCAATCTTAAGCTGCACGTATctcctctgatatgttttgagatag
cccagctggcacacaacgttgttttaacgctcaaataacgttattcgaaa
tttcaaatttcaatccGAGAGTTACTCCGTCATTATGTTGTTTAAGTTTT
ACGAAacacatcccctatatcaaaatatcagaggggatgcggtCTGTGTT
GGTGAATCTTAATCCAATGACGAGGGAAGAATAGTGTTTTGATGTCAAAG
GTATTTTCAAATTAAAGTTATAATAGAGGAGCGAAATTGCGGAAAAATTC
TATCACcaataactttttttcgaattagagagaagaTTTCATATAACTTT
CCACCTAAAGGGACCAATATCTTAGttcggaaaaaaaattgagaaaaatt
ctaaTAATAGAGTGTTGATTGTATAAATATCTATGAAAAGTAATTTACAA
TTAcggtggagtctccataactcgaacacgcaagaggaactcaaatttgc
tcgagttAGTGAAATTCCAAGTTATGGAGCgtaaaggcattgttaactgt
aTGGGCCATAAAACCTTTTCGAATTAAGAtgaagttcgagttaaagagac
tccactgtatcatTGCACAATAAAATTTCCTTTCTCTTTATCATCAGCAT
TTATCCCTGAACAAAACCGACTCATCAACATTGTACCAGTTCAAGGAAAA
GAATGGAGGGTTACCCTGGAAGTCATTGTTCATCAGGGGTCTGGAGTTGA
GTATAATGAAATATTCCGAATGACATCCGACCCGTCGGAGTCTTATGGAC
CAGCAAGACGTATTCCACTTATAACAACTCTGCCGAACAAAAACGAATTC
GCGATGCATGTTCATAATGGCCAGatccaaaagtccaaaaatgtTCCTTT
TCAATTGAACCAATGGTACAGTCTGGAGATCAATCATTATAGAATAGGTC
CGAGAAGATCAATGATTATTTGGCATGCTGACGGGGTTGAGAAATATCGA
GTCATGCAAGATGCTGTACCAGAACTCACCAATGTTCATTGCTTCACTGC
AGGCAATTTCCAAAGACCAATAAAAGGCCAGATTCGAAATTTGAAGTTTG
TTCAAGGTCAAGAGAAACTCAAAGGTGGGTAAagcgaatttttattttta
ctctaAATGAAAAGATACTTTTGAGTATAAAACAACCCTCTTAGTCAAAC
TGCTTTAGTCGGATTAATTCACGAATTTCAGATTTGTCCCGAAATGAATT
CCGTGAAATCGttaactcgcgaaattaagtccacgcaaaattttacaatt
ttacaatttcagACAAAAACTGTTTCAAGGgcattttttaattaaatttt
gtgaaatttaatcTAACTACACTCGAAGAATTAAAGTTAAAGCAATTCCT
TTACtcgaaagaaacaaaaacaaaggaataatagcttggggacacaagaa
gttttttttcgcgttggtgcaatgcaacatgcttcattccaccaacacaa
gaaaaaagtgcgtgtctcatggtttctttttttgtttcacgggacaaaaa
gtgagggaaattcccaaaagacacactgattttgtccctgaaacaatgga
gcaaaattgatcaattttgctcgattgtcccagggacaaaagtgagagaa
acacaaatgttattaaaggaaaaatggggtggagacacgagaatacgttt
caggttggtgggatggagcatgctgcattgcaccaacgccaaaaaaactt
ctcgtgtacCCAAGCCTTAAGTCACCCAAAGATTTAACATTTACACCAAA
TTTTACTTTAGTAAAATCAGGAAATTATATTAATTAAATCATTGAAGTTT
GAGCTGTATCTTTTTTGTGGCTTTTAGGGTTTTCTCCACAGTTCAATGGC
ATTATTGAGACCACTAGCACTTGGCCAAAAGAATGGTATGTGGAAATAAA
GCTTGCAGTTCATTCACTTAATTCAAGAAACGTCCCCGGGAAAACACTGC
CCGACACAAACGACAATATTTTCCATTTCACGTCTGGCACAAACATCAAC
GGGTACGGTTCTCGATTCCCAGCACTTTGGACCAGAAATAGTGCACAACG
CCTGGTTATTTATTTTGATCAGATGTTAGATGGTGGAGGCTACTATAGGG
CAGCAAAGACATTTTCTTTAACAATTGGCCAAGTATATCATATAAGAATC
GAGCACAAACTAAAAGCGGGAGAAACGAATATCTATAAGTACAAAGTTCA
GATCGATAATAATATCTATTATCATTTCGATTACAATCCACCTGAGCTTT
CAACTATGAACGTTTATCTTGGAGACGTATGGTATAAACCAACTGATGCT
ACAATTTCATACTTTGATTATGGACCTTTATAAAAATGTCGTGGTCTTTT
TTGAAACACATAAGCGAGTgtgtgagtgagtgagtgagtgagtgagtgag
tgagtgagtgagagagtgagtgagtgagtgagtgagtgagtgagtgagtg
agtgagtgagtaagtgagtgagtgagtgagagAGAGAGTGAGAGAGAGTG
AGAGAGTGAGAGAgagagtgagtgagtgagtgagtgagtgagtgagtgag
tgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagtgagag
AGAGAGTGAGAGAGTgtgtgagtgagtgagtgagtgagagAGAGTGAGAG
AGTGAGAGAgagagtgagtgagtgagtgagtgagtgagagAGAAAGTGAG
AGAGTGAGAGAGTgagagtgagtgagtgagtgagtgagtgaatTATTTCT
AGCAATAAGTGGAGAATTTTCTTTCGAGAAGCTAAATCTCtgaaacttaa
aatttagaacatttttgaggattttgatTATAGAATTCCACCTGATCACG
CAACCAATAATTTTGAAGAACTTAGCAAGAGAGAAAGGAAAACCGACATT
GGACATCAAAGGGTGAATTTATATTCTTCTTCGTTCCTCTGCTTTAGCGT
GGGCTATCGCCAATTTACCATCAGAAATTTTTAGTTAAGTTTGAATTAGT
GAATAGAAAGTTGAGTGAATGTGTGAACCTAGGCCGGATTAGTAAGCGAA
AGATGGGTATTTTTTACTTTGGAGTGCTAAGGGAACGTTTAGTTAAGAAA
AGTTGTTcgaatgataaaaataattcactCTCCCCCTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019263-exon-sc0000323-1491911889:183295..183333 | TCONS_00019263-exon-sc0000323-1491911889:183295..183333 | Clytia hemisphaerica | exon |
| TCONS_00019263-exon-sc0000323-1510915933:183295..183333 | TCONS_00019263-exon-sc0000323-1510915933:183295..183333 | Clytia hemisphaerica | exon |
| TCONS_00019263-exon-sc0000323-1575043694:183295..183333 | TCONS_00019263-exon-sc0000323-1575043694:183295..183333 | Clytia hemisphaerica | exon |
| TCONS_00019263-exon-sc0000323-1491911889:184042..184518 | TCONS_00019263-exon-sc0000323-1491911889:184042..184518 | Clytia hemisphaerica | exon |
| TCONS_00019263-exon-sc0000323-1510915933:184042..184518 | TCONS_00019263-exon-sc0000323-1510915933:184042..184518 | Clytia hemisphaerica | exon |
| TCONS_00019263-exon-sc0000323-1575043694:184042..184518 | TCONS_00019263-exon-sc0000323-1575043694:184042..184518 | Clytia hemisphaerica | exon |
| TCONS_00019263-exon-sc0000323-1491911889:185272..186586 | TCONS_00019263-exon-sc0000323-1491911889:185272..186586 | Clytia hemisphaerica | exon |
| TCONS_00019263-exon-sc0000323-1510915933:185272..186586 | TCONS_00019263-exon-sc0000323-1510915933:185272..186586 | Clytia hemisphaerica | exon |
| TCONS_00019263-exon-sc0000323-1575043694:185272..186586 | TCONS_00019263-exon-sc0000323-1575043694:185272..186586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000323 | supercontig | sc0000323:183295..186586 + |
Blast
The following BLAST results are available for this feature:
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