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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019264 ID=TCONS_00019264|Name=TCONS_00019264|organism=Clytia hemisphaerica|type=transcript|length=3189bpRun BLAST on NCBI protein sequence of TCONS_00019264-protein >TCONS_00019264-protein ID=TCONS_00019264-protein|Name=TCONS_00019264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp RRSVLGYFKAHVENKMADVNKKSDREKKKRKFSFKEKYDRKQKKKQKKEARun BLAST on NCBI transcript from alignment at sc0000323:224156..254036+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019264 ID=TCONS_00019264|Name=TCONS_00019264|organism=Clytia hemisphaerica|type=transcript|length=29881bp|location=Sequence derived from alignment at sc0000323:224156..254036+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000323:224156..254036+ >TCONS_00019264 ID=TCONS_00019264|Name=TCONS_00019264|organism=Clytia hemisphaerica|type=CDS|length=11340bp|location=Sequence derived from alignment at sc0000323:224156..254036+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00019264 vs. Swiss-Prot (Human)
Match: CI114 (Putative methyltransferase C9orf114 OS=Homo sapiens GN=SPOUT1 PE=1 SV=3) HSP 1 Score: 357.451 bits (916), Expect = 1.287e-112 Identity = 179/299 (59.87%), Postives = 225/299 (75.25%), Query Frame = 1
Query: 229 YTISVALPGSILENAQSPELRTYLAGQIARALVIFNIDEVVIFNESTQ-KKSNDGLFKGVTKASDANVVFARILQYLECPQYLRKYFFPVHQDLKYAGLLNPLDCPHHMRMDDPSPYREGVTLNRPVK-GGGSYVNAGMRKEVKVDKLIKPDVRVTVKLDPYDDEDVEKKKYLTGSVVSPTTPKESDNIYWGYSVRLANSFSAVFTESPYKSGYDLTMGTSERGEVLDQMDLPNFNHLLIVFXXXXXXXXXXXXDETLHESDVGLLFDHYINSCPDQGSRTIRTEEAVLITLSALRPKL 1119
YT+SVALPGSIL+NAQSPELRTYLAGQIARA IF +DE+V+F+E Q K+ +G F GV K A V ARILQYLECPQYLRK FFP HQDL++AGLLNPLD PHHMR D+ S +REG+ ++RP + G GS+VN GM+KEVK+DK ++P +RVTV+L+ D K G VVS P+ +YWGY+VRLA+ SAVF E+P++ GYDLT+GTSERG + LPNF H L+VFGGL+GLE ++D L ++ +LFD Y+N+CP QGSRTIRTEEA+LI+L+AL+P L
Sbjct: 73 YTLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFTGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEESEFREGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDC---KTYHGKVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQLPNFRHALVVFGGLQGLEAGADADPNLEVAEPSVLFDLYVNTCPGQGSRTIRTEEAILISLAALQPGL 368 The following BLAST results are available for this feature:
BLAST of TCONS_00019264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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