TCONS_00019268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019268
Unique NameTCONS_00019268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019268 ID=TCONS_00019268|Name=TCONS_00019268|organism=Clytia hemisphaerica|type=transcript|length=1347bp
gtgaggattggtttatttgcgaatgaaaaattgatttcaTACTCTagcaa
tattttcttttttcttttttattgtacCAGGAGTTAATTACAAACTAAAA
ATAGTTCAAATGTGACGTTAAAATGCTCAAATTTTCACGAGATGATTAAT
GAAAACAACCATGACCTAAATATATCTTAATAttccagccaagcaaaatc
ttagGTCAGCAAAAACACCTTGTTGTTGATAAATTATGAGGACATGCAGC
GTGTCTTATTCTCTTTCAGAGAAATTTTGATATCCAACAAATTCAAGTAT
ATCCaataaaaatatattctaaAATGAATCTGGCAATTTTTTACTGTGAG
CGCTCACCACATTTTAACTTTCACTGAAATTTAGCATGCAAAGACAAACT
ATAAGGATTTTATCGCACATGTTTTGTTCACATTACAATTACCTTAtagg
ccctttttacaccggcccttattggcgttatttttaggctcttAGCTCTT
AGGctcttggcgtaataagggccaaTGTTAAAAGGGCCGATGTTAAAAGG
GCCAAAACTTAGCAAATTTTACTTGAAAGtggcgttaattttttatcatt
catttacagtttactactgaaaaatgatattttaatgtaaattgaagcat
aaatagccattctaacaaattttggcgtttttTTGTTGTCACTGAACGCG
CACTGAATAGAATCTAAATTTACTATATACGCTCTGATACTCACGGTAGT
ATTTTCTAACTCGTAAAGGACAATTGTGGAACTAAATCCAAAACCTGATC
AAATCGCCTTTCCAAAGGTAAATTTAATATAAAATcttataaaatcataa
aatatgttaaataCGCAATCACTAATTacagaaacaaagaaaaaaaactt
aaacttACTTTTAATTAAATAAAATGTATCTGTCACATCAGTTCAATGTC
CAAAATCAATGTGACATGTtttttgtacacgtttttttatataaaaacaa
aaagcataagacttcaaaaaatttggatgttcttgtaaaaaacgtgtaat
aaacGATGAAATTTTAACCAAGACCACCCCAAGAATCAAACATTTtgact
gatcatttttgcaGCTACCATATTTTTCCCAAGTTATGGCCCTTCATATC
AGCTCTCAAGTGGGCAAGGTCCAGATCTCAAGCTTGTTTACGTTACATTA
AAATTGTAGTGATTCAAAATCATCAATAAACCATTTCGTTTCTTCTTAAC
ACGCAATACAAAAACATTGACAATACCATACCAATGATCTAAAAAATATA
GTAAGTTGTTAATGACAAAAGATAACAACAGCATTGAACAGTTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000323:24128..25518-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019268 ID=TCONS_00019268|Name=TCONS_00019268|organism=Clytia hemisphaerica|type=transcript|length=1391bp|location=Sequence derived from alignment at sc0000323:24128..25518- (Clytia hemisphaerica)
GTGAGGATTGGTTTATTTGCGAATGAAAAATTGATTTCATACTCTAGCAA
TATTTTCTTTTTTCTTTTTTATTGTACCAGGAGTTAATTACAAACTAAAA
ATAGTTCAAATGTGACGTTAAAATGCTCAAATTTTCACGAGATGATTAAT
GAAAACAACCATGACCTAAATATATCTTAATATTCCAGCCAAGCAAAATC
TTAGGTCAGCAAAAACACCTTGTTGTTGATAAATTATGAGGACATGCAGC
GTGTCTTATTCTCTTTCAGAGAAATTTTGATATCCAACAAATTCAAGTAT
ATCCAATAAAAATATATTCTAAAATGAATCTGGCAATTTTTTACTGTGAG
CGCTCACCACATTTTAACTTTCACTGAAATTTAGCATGCAAAGACAAACT
ATAAGGATTTTATCGCACATGTTTTGTTCACATTACAATTACCTTATAGG
CCCTTTTTACACCGGCCCTTATTGGCGTTATTTTTAGGCTCTTAGCTCTT
AGGCTCTTGGCGTAATAAGGGCCAATGTTAAAAGGGCCGATGTTAAAAGG
GCCAAAACTTAGCAAATTTTACTTGAAAGTGGCGTTAATTTTTTATCATT
CATTTACAGTTTACTACTGAAAAATGATATTTTAATGTAAATTGAAGCAT
AAATAGCCATTCTAACAAATTTTGGCGTTTTTTTGTTGTCACTGAACGCG
CACTGAATAGAATCTAAATTTACTATATACGCTCTGATACTCACGGTAGT
ATTTTCTAACTCGTAAAGGACAATTGTGGAACTAAATCCAAAACCTGATC
AAATCGCCTTTCCAAAGGTAAATTTAATATAAAATCTTATAAAATCATAA
AATATGTTAAATACGCAATCACTAATTACAGAAACAAAGAAAAAAAACTT
AAACTTACTTTTAATTAAATAAAATGTATCATAATCATAAAATGTTCATT
TTTGTCACATTCGGCGATAAATACTGTCACATCAGTTCAATGTCCAAAAT
CAATGTGACATGTTTTTTGTACACGTTTTTTTATATAAAAACAAAAAGCA
TAAGACTTCAAAAAATTTGGATGTTCTTGTAAAAAACGTGTAATAAACGA
TGAAATTTTAACCAAGACCACCCCAAGAATCAAACATTTTGACTGATCAT
TTTTGCAGCTACCATATTTTTCCCAAGTTATGGCCCTTCATATCAGCTCT
CAAGTGGGCAAGGTCCAGATCTCAAGCTTGTTTACGTTACATTAAAATTG
TAGTGATTCAAAATCATCAATAAACCATTTCGTTTCTTCTTAACACGCAA
TACAAAAACATTGACAATACCATACCAATGATCTAAAAAATATAGTAAGT
TGTTAATGACAAAAGATAACAACAGCATTGAACAGTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010819XLOC_010819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019268-exon-sc0000323-1575043694:24589..25518TCONS_00019268-exon-sc0000323-1575043694:24589..25518Clytia hemisphaericaexon
TCONS_00019268-exon-sc0000323-1575043694:24128..24544TCONS_00019268-exon-sc0000323-1575043694:24128..24544Clytia hemisphaericaexon
TCONS_00019268-exon-sc0000323-1510915933:24589..25518TCONS_00019268-exon-sc0000323-1510915933:24589..25518Clytia hemisphaericaexon
TCONS_00019268-exon-sc0000323-1510915933:24128..24544TCONS_00019268-exon-sc0000323-1510915933:24128..24544Clytia hemisphaericaexon
TCONS_00019268-exon-sc0000323-1491911889:24589..25518TCONS_00019268-exon-sc0000323-1491911889:24589..25518Clytia hemisphaericaexon
TCONS_00019268-exon-sc0000323-1491911889:24128..24544TCONS_00019268-exon-sc0000323-1491911889:24128..24544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:24128..25518 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.202273	0	0	0	0.0584808	0	0	0.0842703	0.114699	0	0.0649694	0.0381562	0	0.0476397	0.367008	0	0.250156	0.244665	0.101682	0.219787	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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