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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019269 ID=TCONS_00019269|Name=TCONS_00019269|organism=Clytia hemisphaerica|type=transcript|length=663bp
GATTCTCATCAACTGACCatataacaaacaaaaaatgaagattgTCATTG
TCTCTCTTGCTCTCTTGGCTGTTGCCGCCGCCCTCGAGGTTGGAACCCAA
ACTGGCACCACACCTCCTGCTGTCCCATGTCCCGATTCTCTCTGCAAAGG
AAAAGCTGACGGAAACTTCCAATACATCTACTATGGACGACtcaacaaaa
actactttctcCAATGCTCAAACGGATTAGCTTACTGTCAAGCCTGCTGG
CCATTGTCCttggaattcagtgaaaaatgcAACCAATGTTTGTACAGCAA
ACATGACGACTGTGTTACCACCGAAAAATGGCACCCAGCCACCACCTTTG
CTTGCCCAGACAAATGCCCAGCCCGTGGACCACACTTCAGTGGAAACATT
GAAGACCCACACAACCCACACCAATACATTGCTTGCTTCCACGGACAAAC
TGTCGGATGCATCGCTTGCCCAAAGGGATTGGAATTCAACGAGAAATGGA
ACGCCTGTTTGTTCAAAGGAAAATACAAGACCGAGCCAGAGCactaaata
attttcaaaattaatttgtgctaaaacgaaaatactgttgcaaaaatgtc
attttaaacaattttgtaatttttaatctgtttttttaagaaataattaa
TCATTTTACTTGC Run BLAST on NCBI protein sequence of TCONS_00019269-protein >TCONS_00019269-protein ID=TCONS_00019269-protein|Name=TCONS_00019269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MKIVIVSLALLAVAAALEVGTQTGTTPPAVPCPDSLCKGKADGNFQYIYY
GRLNKNYFLQCSNGLAYCQACWPLSLEFSEKCNQCLYSKHDDCVTTEKWH
PATTFACPDKCPARGPHFSGNIEDPHNPHQYIACFHGQTVGCIACPKGLE
FNEKWNACLFKGKYKTEPEH Run BLAST on NCBI transcript from alignment at sc0000323:37435..38237- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019269 ID=TCONS_00019269|Name=TCONS_00019269|organism=Clytia hemisphaerica|type=transcript|length=803bp|location=Sequence derived from alignment at sc0000323:37435..38237- (Clytia hemisphaerica)
GATTCTCATCAACTGACCATATAACAAACAAAAAATGAAGATTGTCATTG
TCTCTCTTGCTCTCTTGGCTGGTAAGTTAAATTTTGATATTTTTATTTCC
AAATCTGCTTAAACTTTTAACAGCCTTGTGTCGTAGATTATTCAGAGCGA
AACAAATCCTCTAGAATGTACCTACAATAGAGCTCTCACAACTTCTTTTT
ATTACTTATAGTTGCCGCCGCCCTCGAGGTTGGAACCCAAACTGGCACCA
CACCTCCTGCTGTCCCATGTCCCGATTCTCTCTGCAAAGGAAAAGCTGAC
GGAAACTTCCAATACATCTACTATGGACGACTCAACAAAAACTACTTTCT
CCAATGCTCAAACGGATTAGCTTACTGTCAAGCCTGCTGGCCATTGTCCT
TGGAATTCAGTGAAAAATGCAACCAATGTTTGTACAGCAAACATGACGAC
TGTGTTACCACCGAAAAATGGCACCCAGCCACCACCTTTGCTTGCCCAGA
CAAATGCCCAGCCCGTGGACCACACTTCAGTGGAAACATTGAAGACCCAC
ACAACCCACACCAATACATTGCTTGCTTCCACGGACAAACTGTCGGATGC
ATCGCTTGCCCAAAGGGATTGGAATTCAACGAGAAATGGAACGCCTGTTT
GTTCAAAGGAAAATACAAGACCGAGCCAGAGCACTAAATAATTTTCAAAA
TTAATTTGTGCTAAAACGAAAATACTGTTGCAAAAATGTCATTTTAAACA
ATTTTGTAATTTTTAATCTGTTTTTTTAAGAAATAATTAATCATTTTACT
TGC Coding sequence (CDS) from alignment at sc0000323:37435..38237- >TCONS_00019269 ID=TCONS_00019269|Name=TCONS_00019269|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000323:37435..38237- (Clytia hemisphaerica)
TTGCCGCCGCCCTCGAGGTTGGAACCCAAACTGGCACCACACCTCCTGCT
GTCCCATGTCCCGATTCTCTCTGCAAAGGAAAAGCTGACGGAAACTTCCA
ATACATCTACTATGGACGACTCAACAAAAACTACTTTCTCCAATGCTCAA
ACGGATTAGCTTACTGTCAAGCCTGCTGGCCATTGTCCTTGGAATTCAGT
GAAAAATGCAACCAATGTTTGTACAGCAAACATGACGACTGTGTTACCAC
CGAAAAATGGCACCCAGCCACCACCTTTGCTTGCCCAGACAAATGCCCAG
CCCGTGGACCACACTTCAGTGGAAACATTGAAGACCCACACAACCCACAC
CAATACATTGCTTGCTTCCACGGACAAACTGTCGGATGCATCGCTTGCCC
AAAGGGATTGGAATTCAACGAGAAATGGAACGCCTGTTTGTTCAAAGGAA
AATACAAGACCGAGCCAGAGCACTAAATGAAGATTGTCATTGTCTCTCTT
GCTCTCTTGGCTGTTGCCGCCGCCCTCGAGGTTGGAACCCAAACTGGCAC
CACACCTCCTGCTGTCCCATGTCCCGATTCTCTCTGCAAAGGAAAAGCTG
ACGGAAACTTCCAATACATCTACTATGGACGACTCAACAAAAACTACTTT
CTCCAATGCTCAAACGGATTAGCTTACTGTCAAGCCTGCTGGCCATTGTC
CTTGGAATTCAGTGAAAAATGCAACCAATGTTTGTACAGCAAACATGACG
ACTGTGTTACCACCGAAAAATGGCACCCAGCCACCACCTTTGCTTGCCCA
GACAAATGCCCAGCCCGTGGACCACACTTCAGTGGAAACATTGAAGACCC
ACACAACCCACACCAATACATTGCTTGCTTCCACGGACAAACTGTCGGAT
GCATCGCTTGCCCAAAGGGATTGGAATTCAACGAGAAATGGAACGCCTGT
TTGTTCAAAGGAAAATACAAGACCGAGCCAGAGCACTAAATGAAGATTGT
CATTGTCTCTCTTGCTCTCTTGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019269-exon-sc0000323-1575043694:38167..38237 | TCONS_00019269-exon-sc0000323-1575043694:38167..38237 | Clytia hemisphaerica | exon |
| TCONS_00019269-exon-sc0000323-1575043694:37435..38026 | TCONS_00019269-exon-sc0000323-1575043694:37435..38026 | Clytia hemisphaerica | exon |
| TCONS_00019269-exon-sc0000323-1510915933:38167..38237 | TCONS_00019269-exon-sc0000323-1510915933:38167..38237 | Clytia hemisphaerica | exon |
| TCONS_00019269-exon-sc0000323-1510915933:37435..38026 | TCONS_00019269-exon-sc0000323-1510915933:37435..38026 | Clytia hemisphaerica | exon |
| TCONS_00019269-exon-sc0000323-1491911889:38167..38237 | TCONS_00019269-exon-sc0000323-1491911889:38167..38237 | Clytia hemisphaerica | exon |
| TCONS_00019269-exon-sc0000323-1491911889:37435..38026 | TCONS_00019269-exon-sc0000323-1491911889:37435..38026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000323 | supercontig | sc0000323:37435..38237 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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