TCONS_00019282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019282
Unique NameTCONS_00019282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019282 ID=TCONS_00019282|Name=TCONS_00019282|organism=Clytia hemisphaerica|type=transcript|length=1796bp
GTTTTCGAAGATGGCAAGAGAGTGCTGATCAACATTGCGACTCCGGATTC
GATATTCCGGCTTGGTAAATCGAGGTTACAAGATGAAAAAGACGAAATAT
TGAGTATCTATTTCGACCAACAACAGCACACAAGTCTCGCCGAATTTCTC
AATGTATTTTTGGAATCGTCATCGTCAAATATGGAGGGGAAAGCAATCAA
CCATTTCATTCAGGTGACAACGTTTTCAAGATTAATGTCCAAACCAGAGG
AAGTTAGCGACTCTTTAAACCATCGCATCTCGGTCAAAATACTTGATATT
GTGAAGTACCCAACAGAATTTGATTTCCGCAAAGACCTTGAAACAAGCCT
CAAAGAAAACGGCGACGATCCTTGCGTCATTATCGTCCAACATACCGAGA
CCGATAGAATTGATCGTGATGTTGTAGCGTGTGCACAACACATTTGTCGT
GAAACACAGCGAAAGTTCAATTGCCACAacactttctttcttttcctgGT
TCAACTAAACACATCGTTGAAATCATCAGTTGGTTATCATTCGTCTTGGA
TATGCACCCACATTGATGACATCAGGAATAACAATTTCTCATTCATGCGA
CAATGTCAACAACCTTTAAGTTCACTCTTCCAACCACCAGTGTCAGACAC
GATGCTGGCTACTGTTAAAAATAGCATTCAATCTGCTATGAAACAGTTTA
ATAATGAAAAGAACATGGACTTGGATAAGGTTTCAAGGAAAATTATATTG
ATTCAGCAACGCATTGGATCAAATGACGAACTATCACTTGCTTTCATTGA
AGTCACAATGCAATATATGCAGAATATGATCGCAAGTCAAGAGAGTCTCA
TGGTCAATGCCAGTAATTGGATGCTTGGTGAAGCAATCAAAGAACAAAAT
CGATTGAACTACGCCACATTCCAAGCGTCACTTGTCTCTTGTATCGAAAC
TAAAGTTGCCAACATTTGGGCGCAATTCTTGAATTTGATTGATATCAATG
ACAACCTTTTGTTATTGGAGATGGATGATTACCAAGAGATCTGGATGACT
TTGATGAAGATTGTGATGGGAGAATCTAAAGGTTTGGACAATGTAGACGA
GGTACCAAATGCACCACCATCGAGCAGAATGGTGAAGAATCAACACGAAG
GAGAACCTGGTGGTGGTATCGTATCATACGGTTTCCCTTTTTCAAGTTAT
ATTGTCAAAGATGTTGAATCGAAATTAAAAGCAAGTCAAGAGCTAAACAA
TGACAAAGAATGGGATATGGAGCTCCTAGACGAAGCATTGACACAATCAC
CTTACTCAGAGGTGTTTGAAGAACTCTCTGAAGAACAAATCGACAATTTC
ACTAAAGATCTGATGATGCTGAAGTATCCTGATCTGTCGGAAGATGCTTA
CAAGGTTTTGCAAATGGGTATTGACATGGGTTTGAAGAAAATCAGGAACG
ACCGCAATGCGAACAAAGCGTACGGCGATGATGAGGATGAAGACGATGAT
TATGATGAAATTACCGAAATTTTNtgaagtggtttttcctggaaaattct
tattcgccttaaaagatggattttcgtattttggggaaattccctttaac
caaataagaaaatatatcttttctcaatgttgactaatttttttctgatt
ttttgcacaatgatgtaaaatggcaatgcccaaaatgtgaaggagccaga
tttttagggaaaatttttttgggcaaatttgggccaaaaacagcttaaaa
ggttttttgggcctgaatggtttaagtgattttcgtatttggggaa
Run BLAST on NCBI

transcript from alignment at sc0000323:161628..168034-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019282 ID=TCONS_00019282|Name=TCONS_00019282|organism=Clytia hemisphaerica|type=transcript|length=6407bp|location=Sequence derived from alignment at sc0000323:161628..168034- (Clytia hemisphaerica)
GTTTTCGAAGATGGCAAGAGAGTGCTGATCAACATTGCGACTCCGGATTC
GATATTCCGGCTTGGTAAATCGAGGTTACAAGATGAAAAAGACGAAATAT
TGAGTATCTATTTCGACCAACAACAGCACACAAGTCTCGCCGAATTTCTC
AATGTATTTTTGGAATCGTCATCGTCAAATATGGAGGGGAAAGCAATCAA
CCATTTCATTCAGGTTTGTTTCAGTGATTAGTTTTGTTGAAGGGTTGTCG
CCAAGATCCTTCACTTGGAAAACCTAAAAAAAGATCCAAAATGAATTTTA
TCCCATGTTCATCTAACATAAACAACTTTCAATGTTGGGTCAATTATTGG
AATATTGTTGGATAAGAATGTCCCGAAGTAGGGAGCCATGAAAATTTTTG
ATATACCTTATCGGGGAAAACTTCGTCTGGGAAAAGTGACGAAATTTTGG
CCAAGTGACGAATATTTTTCCCCGACGTAAATTTTCCCCAGCCTTAATGT
GTTTACCAACTACCAGCAAGTGACGAATATTTTTCCCTGACGAAAATTTT
CCCCGACGAAGTTTTCCCCGATAAGGTAGTTATCTTTTTTCGTTATATCT
TTTTTTAAGGTGACAACGTTTTCAAGATTAATGTCCAAACCAGAGGAAGT
TAGCGACTCTTTAAACCATCGCATCTCGGTCAAAATACTTGATATTGTGA
AGTACCCAACAGAATTTGATTTCCGCAAAGACCTTGAGTAAGGATTGCTT
TTCTCAACCTTTGGGAGAATCAATTTGGAACCTTACTGCCCGTTCCCCTT
TACTGATAACAAATTTAAAGCGGAAAGGGCTAGTAGATATCTGGATTTTG
CATAAAATTAAAGGCGATTCTTGGTAGAATTACCAAGGAGTTCACATGGC
ACTATTGGATTTCCTTTGAGAGCGAGAAATAGCGTTGACACCTAATAGAA
ATCAAGGTTCAATCTATCGAAACGAAAGTTTTCTCTTTTTTTGGTAAGAG
CTTAAAAGCATTCTTAGCCGTCATATATTATAATAGATTTAATATGATAT
TGCCTGACGTGTCAATTACAATCGAAATCAAGTGGGATGTTGTTCAGCCA
AATATTTATATCAGTTTCTAATTATTTAATTAATTTCATTATATTAATTT
CTACAATACTTTTTTTTTGCAGAACAAGCCTCAAAGAAAACGGCGACGAT
CCTTGCGTCATTATCGTCCAACATACCGAGACCGATAGAATTGATCGTGA
TGTTGTAGCGTGTGCACAACACATTTGTCGTGAAACACAGCGAAAGTTCA
ATTGCCACAACACTTTCTTTCTTTTCCTGGTAAGTGATTTATATCTGCAC
ATAATACGCGCTGTTTTTTTATTTAACAATAATTAAATCGTAGTTTAATT
TCAAATCGTCTAAATCACTTATTCCGCCTGCGGTACTACCGGGGCGTCCC
GCCTGCAAGTAGCCTTCTCACTTGGTTCCATGCGATATTGGCTATACTCT
CAAAGCACAAACAAGGTTTAAGATGGCGGTTAAATTTTTATTTGGAACCA
ATAGATTTTTGCATGAGGCTCAGTTGTCTTAACTTCTTCGAATTTCTAAG
ATTTTAATATTCCTAACGTTGTTGGCTTGCTTTGTTCGTAGATTTCGATT
AGCCTAGTTAACTAAGCATGTATTTACAAGGCTAAGAAACGAGGCTTATA
GCAATGAAGCGTTTCCAGCGCTTTAAAGATTTTTTTTATTTACGGATTTT
TATGTTTGCCTTGGATCATTACTAAATCAAATCAAACTAGCTTAGATTTC
TAGGTTAGTTTATGGTCAAATTTCTGTTACAAACAATCAAATATAAAATT
CGATTAAAAGAAAAATTACAAAATTACGATAGTCTTTTAAGTCTTATAAT
TTTTATCTTGTATGGAGAAAGATGGCGTCGAGAGTAAAAAAAATCTGTGA
TGAAAATCGAGTATAATCCCATCCAAATCATCTGAGACTTAAAAATTTCA
CGTTTCATTGAACCAGTTTTTTGAATTTGATATTTGATACATGTCACTCC
ACTAGGTTCAACTAAACACATCGTTGAAATCATCAGTTGGTTATCATTCG
TCTTGGATATGCACCCACATTGATGACATCAGGAATAACAATTTCTCATT
CATGCGACAATGTCAACAACCTTTAAGTTCACTCTTCCAACCACCAGTGT
CAGACACGATGCTGGCTACTGTTAAAAATAGCATTCAATCTGCTATGAAA
CAGTTTAATAATGAAAAGAACATGGACTTGGATAAGGTTTCAAGGAAAAT
TATATTGATTCAGCAACGCATTGGATCAAATGACGGTAAGTTCTCTGTAA
AAGGTTTTGAAACAAAACAATCAATACTAAAGTCCTTTTCAAATTAGTCT
GAATCGCTGACCTTTATAGATATAAAAAGAACTTAAATGATATTGTCTCA
GTTTACTCTGCTTTCCCCCTCCTACCCAGTTGTACGATTTTGAAGTTAAG
TTTGCCCCCAGTTTATTTAACAAAAGATTAAATTAGCGTTTATCGTTTAA
TCGTCAACATAACCTGTACCTCCTTTAGCCCGCTTACAACTGAGCGTTCA
ACCATTTGTAGCGCTACTTCTTCTCTGGTCCGAGCGATATTGGCTAGCAC
TCGAAAAATCCAAGATGGCGTAGGTGAACTAGTCGAGGAGAAAATTTTTG
CCGCTCTTCCCTCCTACAGATATTGATTGCGGGCAACCCTTTTCTAATTT
ATCACTAACAGGGGACTAATTTTCCCCAAAACTGATTATGGGCTAGCCAA
ATATTTCAATGCCAGAACTTAAATGATATTGTCTCAGTTTACTCTGCTTT
CCCCCTCCTACCCAAGTTGTACGATTTGGATACTGAATGTTTTTTTTCCT
CTTCCTGTTCCACATCCTTGTCAATTCAACAGGAAAAAGCTTATAAATTA
GAACTGATGGGTAAGCAAACGATATCACTTATCTAAAAACAAAACCTTTA
ACGCCTTCACGCCTTTTTATCTTATAGAACTATCACTTGCTTTCATTGAA
GTCACAATGCAATATATGCAGAATATGATCGCAAGTCAAGAGAGTCTCAT
GGTCAATGCCAGTAATTGGATGCTTGGTGAAGCAATCAAAGAACAAAATC
GATTGAACTACGCCACATTCCAAGCGTCACTTGTCTCTTGTATCGAAACT
AAAGTTGCCAACATTTGGGCGCAATTCTTGAATTTGATTGATATCAATGA
CAACCTTTTGTTATTGGAGATGGATGATTACCAAGAGATCTGGATGACTT
TGATGAAGATTGTGATGGGAGAATCTAAAGGTTTGGACAATGTAGACGAG
GTACCAAATGCACCACCATCGAGCAGAATGGTGAAGAATCAACACGAAGG
AGAACCTGGTGGTGGTATCGTATCATACGGTTTCCCTTTTTCAAGTTATA
TTGTCAAAGATGTTGAATCGAAATTAAAAGCAAGTCAAGAGCTAAACAAT
GGTATGTTTATTTTTATTATCTCAAACCTTCTATTTCCTTTCTCTTGTTT
AAATGTCAATTTTAGTAAAAACAATTATGATGAATAATGACAATCAAAAT
TTATCGATTTAGTTGAAAAGTATCTCCATTGGAAGTGTGACAATAACCAT
ATTTTAAAACTATATTTACATGGAGAATAATTGTCCAATTCGTTTGGAAA
GTCATTGAATTTGAAATGTTGTTAAACTCAATTTTTTCTGTAACGTCGAC
AAAGCCTGAAAATGTTCTTAACCTGTTCTTAACATTTTGGCTATCGAAGC
CTTATGTATTGATATAGTTTGTTCTTATGAAAAAAAAAGTGTATGTACCT
AAGAATCCCTATTCCATTCAAAATATTCCGTTCTGAACTTTAGACAAAGA
ATGGGATATGGAGCTCCTAGACGAAGCATTGACACAATCACCTTACTCAG
AGGTGTTTGAAGAACTCTCTGAAGAACAAATCGACAATTTCACTAAAGAT
CTGATGATGCTGAAGTATCCTGATCTGTCGGAAGATGCTTACAAGGTACG
AGTTTCTACTTGAACACCCAACGTTTTACCAAACCCAACAGTGCCATACA
GTTTCATGTAGTATAAGATTAAGCATAATCCAAAAATAATCATTTGGAAA
TATTTCGACGATCTTCATGTCATAATTTTCAACCACGTTTACAACCACCA
AGTGTGGTTGAAAATGATGACACTAAGATCGTCGAAATATTCCCCAACAT
TGACTCAATTTTCTTGTTGTTTTTTTATTTAAAAAAATCCAAGGAAATGT
TTATTTTTGGGTTCTTCAACGTCTTACAACTTTCAAAAATACTATGCTTT
CTTTTTTTGGACCTACCTCGGAGGTCCTTTAATTTAACCTTTGTTCGTTC
GTTCGTCCGTTCGTCCGTTCGTCTGTTTCCAGCTTTTCTCGGGATTGGAC
CATTATTTTTTCTGAGTACACAAAAAGTGACGGAGCCCGATTTTCGAAAA
AAATATTTTTGTGCAAATTTGGGCCAAAAAGTGCCTAAAAATGGGATTTT
TTTGGACTTTTCTGTGAAATTGCTTCATAACTTTTTTATTATCCAGATAA
ACTGTACCTTTAATATATAGAAGTCTTCGAGACAAATTTGCTGAAAGTAA
TGTTTTTCGTTAAGGATTTTTTCAAAGGTGCTAACGTCAACCGGGCATGA
AATTTTGCATTGATAAAGACGTATGTACTAAGCTTTCCAGAACTTTAAGT
CGAACAAATTGGACAAATGACCACTGACCTTTATATATCTCTGGACCAAG
CTATATCCGCCATCTTTGATCGAAGTTATTTTTGAATTGATACCCGTAAA
GAAGCCATTGTAGTGTTTGAAACTTTGCCTACCGACAAACGGCGCTACAT
CACTAATCACTAGCGCACAAGCAAAACAAGCTCTCTCCCGCTCTCTCCGC
GGGTACCAATTTCCAGGGATATATAAAGGTCAGTGCAAATGACCCCTTTT
TGGAGATCTACACTTTAATGTCTACCAGATGGTATTTTTTCTGCACCAAT
CAAAATCACATTTAAATTTCATTTAAATAAATATTTATGATATGCACCAC
TGGAGGGTCTTCTGAGAACTTTTATTATTTTCCAAGAACGCAACTCAAAC
AATAGAAAAAGTGACGTATTGGGTGGAACAAAAAAAAAAACACAGAAAAG
TTGCATAATTTCGTGAAGTCATTGTAGTGGTGCATATCATGAATAAGTCT
GTTATACTGTGTGCTTTAGGTTTTGCAAATGGGTATTGACATGGGTTTGA
AGAAAATCAGGAACGACCGCGATGCGAAGAAAGCGTACGGCGATGATGAG
GATGAAGACGATGATTATGATGAAATTACCGAAATTTATTTCGTTGTGTG
TTTCTATAAAACGCAATTCGATAATGCAGCCAAGATGTTATCTTGTTCAC
CAGAGATTGCCAAGAAAGTCATATCCACAATGAAAAGACAATACACTGAA
GAAATGGTACAGCTCTTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGT
TCTATAAATTAACCCATGTCCGTTCGTCTNAATTGATACCCGTAAAGAAG
CCATTGTAGTGTTTGAAACTTTGCCTACCGACAAACGGCGCTACATCACT
AATCACTAGCGCACAAGCAAAACAAGCTCTCTCCCGCTCTCTCCGCGGGT
ACCAATTTCCAGGGATATATAAAGGTCAGTGCAAATGACCCCTTTTTGGA
GATCTGCACTTTAATGTCTACCAGATGGTATTTTTTCTGCACCAATCAAA
ATCACATTTAAATTTCATTTAAATAAATATTTATGATATGCACCACTGGA
GGGTCTTCTGAGAACTTTTATTATTTTCCAAGAACGCAACTCAAACAATA
GAAAAAGTGACGTATTGGGTGGAACAAAAAAAAAAACACAGAAAAGTTGC
ATAATTTCGTGAAGTCATTGTAGTGGTGCATATCATGAATAAGTCTGTTA
TACTGTGTGCTTTAGGTTTTGCAAATGGGTATTGACATGGGTTTGAAGAA
AATCAGGAACGACCGCAATGCGAACAAAGCGTACGGCGATGATGAGGATG
AAGACGATGATTATGATGAAATTACCGAAATTTTNTGAAGTGGTTTTTCC
TGGAAAATTCTTATTCGCCTTAAAAGATGGATTTTCGTATTTTGGGGAAA
TTCCCTTTAACCAAATAAGAAAATATATCTTTTCTCAATGTTGACTAATT
TTTTTCTGATTTTTTGCACAATGATGTAAAATGGCAATGCCCAAAATGTG
AAGGAGCCAGATTTTTAGGGAAAATTTTTTTGGGCAAATTTGGGCCAAAA
ACAGCTTAAAAGGTTTTTTGGGCCTGAATGGTTTAAGTGATTTTCGTATT
TGGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010824XLOC_010824Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019282-exon-sc0000323-1575043694:167822..168034TCONS_00019282-exon-sc0000323-1575043694:167822..168034Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1575043694:167298..167425TCONS_00019282-exon-sc0000323-1575043694:167298..167425Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1575043694:166706..166862TCONS_00019282-exon-sc0000323-1575043694:166706..166862Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1575043694:165700..165979TCONS_00019282-exon-sc0000323-1575043694:165700..165979Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1575043694:164534..165007TCONS_00019282-exon-sc0000323-1575043694:164534..165007Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1575043694:163990..164141TCONS_00019282-exon-sc0000323-1575043694:163990..164141Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1575043694:161628..162019TCONS_00019282-exon-sc0000323-1575043694:161628..162019Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1510915933:167822..168034TCONS_00019282-exon-sc0000323-1510915933:167822..168034Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1510915933:167298..167425TCONS_00019282-exon-sc0000323-1510915933:167298..167425Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1510915933:166706..166862TCONS_00019282-exon-sc0000323-1510915933:166706..166862Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1510915933:165700..165979TCONS_00019282-exon-sc0000323-1510915933:165700..165979Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1510915933:164534..165007TCONS_00019282-exon-sc0000323-1510915933:164534..165007Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1510915933:163990..164141TCONS_00019282-exon-sc0000323-1510915933:163990..164141Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1510915933:161628..162019TCONS_00019282-exon-sc0000323-1510915933:161628..162019Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1491911889:167822..168034TCONS_00019282-exon-sc0000323-1491911889:167822..168034Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1491911889:167298..167425TCONS_00019282-exon-sc0000323-1491911889:167298..167425Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1491911889:166706..166862TCONS_00019282-exon-sc0000323-1491911889:166706..166862Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1491911889:165700..165979TCONS_00019282-exon-sc0000323-1491911889:165700..165979Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1491911889:164534..165007TCONS_00019282-exon-sc0000323-1491911889:164534..165007Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1491911889:163990..164141TCONS_00019282-exon-sc0000323-1491911889:163990..164141Clytia hemisphaericaexon
TCONS_00019282-exon-sc0000323-1491911889:161628..162019TCONS_00019282-exon-sc0000323-1491911889:161628..162019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:161628..168034 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16698	1.09575	1.84648	2.17246	2.05931	1.10938	1.87708	1.99215	0.969323	2.45595	0.652239	1.0913	1.47539	0.971552	1.57346	1.79609	1.39092	1.28879	2.39711	2.40348	1.97967	1.76472	1.1575	1.25114	1.69435	3.07823	4.60361	4.66177	2.39525	2.10713
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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