TCONS_00019288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019288
Unique NameTCONS_00019288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019288 ID=TCONS_00019288|Name=TCONS_00019288|organism=Clytia hemisphaerica|type=transcript|length=372bp
ATTTCGCTTCATTTACCTAAAGATGctatttttagtttgaaaagaTGAAA
TTGTAATGCATAActccaaaaatatttaattCAAGGAAGTTTATATAGTA
GTTTTTGAAGGATGAAAGATGGAAAGtgatttaattttgttgaattCACA
CATATAGCTATAACAGACTCTGGCAAAAATGCTATTATAGTCATCAAtat
taaaatatcttttttgaacTTGTTGGCTCTCGTCACTGGGAGAGGGAGAC
ATCACAATTTCATTCCCAAGAAAGAAGAAACGAGACTATTTGGCGAAGAT
GATACTTGgtgataaaagaaaaatcaaatattgGCTTGATGGTAAACAAG
TCAGTGTAAATCATAGAAGCGG
Run BLAST on NCBI

transcript from alignment at sc0000323:330323..331112-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019288 ID=TCONS_00019288|Name=TCONS_00019288|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at sc0000323:330323..331112- (Clytia hemisphaerica)
ATTTCGCTTCATTTACCTAAAGATGCTATTTTTAGTTTGAAAAGATGAAA
TTGTAATGCATAACTCCAAAAATATTTAATTCAAGGAAGTTTATATAGTA
GTTTTTGAAGGATGAAAGATGGAAAGTGATTTAATTTTGTTGAATTCACA
CATATAGCTATAACAGACTCTGGCAAAAATGCTATTATAGTCATCAATAT
TAAAATATCTTTTTTGAACTTGTTGGCTCTCGTCACTGGGAGAGGGAGAC
ATCACAATTTCATTCCCAAGAAAGAAGAAACGAGACTATTTGGCGAAGAT
GATACTTGGTGATAAAAGAAAAATCAAATATTGGCTTGATGGTATGATAG
TTACACATTACGCCTGATTGCGTCTCCTTTAATGAACTCTCCCAGCCACA
TTGCCAATTTCTCGGTACAGAGTTTCCTCTTTCTCGTGCTTAATGATTTC
AGAATGTTCTGAACCATATTTTACTGAAGAAAGTCTATTATAGTGGGGGT
TATAGTTATAGAGACTATTTTATGAGGCTTTACCTAAAGGTAACACAGAC
CTGGCGACGGGGAGACTGGGGAGACTTTAGCCTCCTCACTTTTTACGATT
GTTCCACTGGGCATGTAAGAAGCTTGTTAAAGTTATAAAGATATTCCATT
TATAGAGGATCGTGTTAGGAAACTACTGTATATTGTCTCAAGCACTGAAT
TGACTTTTCCAAGCGCATGCTGTTGTTTCTAAAACTAGTTTTTTTTCTCT
CTCTTTTAGGTAAACAAGTCAGTGTAAATCATAGAAGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010827XLOC_010827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019288-exon-sc0000323-1575043694:330772..331112TCONS_00019288-exon-sc0000323-1575043694:330772..331112Clytia hemisphaericaexon
TCONS_00019288-exon-sc0000323-1575043694:330323..330353TCONS_00019288-exon-sc0000323-1575043694:330323..330353Clytia hemisphaericaexon
TCONS_00019288-exon-sc0000323-1510915933:330772..331112TCONS_00019288-exon-sc0000323-1510915933:330772..331112Clytia hemisphaericaexon
TCONS_00019288-exon-sc0000323-1510915933:330323..330353TCONS_00019288-exon-sc0000323-1510915933:330323..330353Clytia hemisphaericaexon
TCONS_00019288-exon-sc0000323-1491911889:330772..331112TCONS_00019288-exon-sc0000323-1491911889:330772..331112Clytia hemisphaericaexon
TCONS_00019288-exon-sc0000323-1491911889:330323..330353TCONS_00019288-exon-sc0000323-1491911889:330323..330353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:330323..331112 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.471442	1.04801	1.57187	1.16666	0	1.01876	0	0.261973	0.366827	0.400501	0	0	1.00827	3.41748	0.299454	0.458436	0	0.252178	1.43946	0.684839	0.873632	0.263917	2.68771	1.80459	2.30418	1.46408	0.298448	0	0	0.345158
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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