TCONS_00019289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019289
Unique NameTCONS_00019289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019289 ID=TCONS_00019289|Name=TCONS_00019289|organism=Clytia hemisphaerica|type=transcript|length=841bp
AGGTGGTATTTGCTATTGCGAAAATAACCAGGTAGGTACATACCTTGGAA
GTCTTAATACCCAATGGAAAAATTGTGTTTATAAAAGTCCCAAACCACCC
TACCAGTTCGAAGGTTGTCCAAATGATGATTGGGAGGTTGGTCAGGGAAA
TTCTAGCTTAACAGATGCTAAATTTCATTACAGTATGTCTTCATGCTATG
TCCATTGCATACATACACACAATAATAGATTAACCCATGCTGGGGTATCC
TACAACCATTTGCTCCGTAGCTGTAAATGCATTAGCGGTGTGCAACCTTT
AAACTCATTAAGTCTTTGGAGGACATGTTATaagtgaaaaaactttttca
atcagtcacaaaatttcttccttcaaagtACTAATTATCATTTCAACATT
TATATGTACTGTACGTCTTTATccaaggaattattatagacactggatat
TTCAATTCATTCGGTTTTACCGTAAAAAACGATTACTTTAAGGGCATAAA
CTgtcgcgggcagaaacttttgcgttaatcgcgattttgatcctttttcg
cgaaagtttctgccaggtcaGAAATTAAACCTTTCCTATtcagttttgca
ctgtttgctaaattgttgcgtgttttatgagtttttgttaccaaaaaggt
aaattttaaatgaattcgtgaaagttctatctgtgaaatttcggctaaaa
ccataattcgcgaaacttaaattcgctaaatttcgtgacttttttacttc
gcgaaactttctgcccttaaagtacaTTACTGGTATAATTTCACAAAAAC
ATGTACtagtgaaaaaaagaagaaaataaaagtaatataaa
Run BLAST on NCBI

transcript from alignment at sc0000323:335940..339582-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019289 ID=TCONS_00019289|Name=TCONS_00019289|organism=Clytia hemisphaerica|type=transcript|length=3643bp|location=Sequence derived from alignment at sc0000323:335940..339582- (Clytia hemisphaerica)
AGGTGGTATTTGCTATTGCGAAAATAACCAGGTAGGTACATACCTTGGAA
GTCTTAATACCCAATGGAAAAATTGTGTTTATAAAAGTCCCAAACCACCC
TACCAGTTCGAAGGTAAGATTATCGTTTCTTTATACAGATTTGAAGAGTA
TATGTCTCTTTATGCAACTTCACCAGAAATGAATAGATCATTAAATCACG
GTGCGTTGTTAGTTTAATCTTCAGTTGGGCCATTGGAAAAAGTAGAAAAT
CGGGCTCCCCCCTCCCCCAGAAAACTAAAAAAGGATAGGGGAAATCGTTT
TTCCATTTTTTTTTTCATATCTTACGATGTTTTAGCTGTGTCAGTAAAAC
CCAAGGTAAAAACCTAATTCTACTGGACTGAGAAGGGTGAAGCGAAAGTG
GGGAGGCACACTTCCCTATCTTTCGTTAAACAGTAGTAGGAAAAAATAGC
TTTCGGGCTGCGGTAGAAAACTTACTATTCTCACTAAATGATTACCGTGA
CATCGGGTAACTTGCATCAGTGGAGGGAAACTTGCATAACCATCAAATGC
CTGACCAATAAAAGGAGCAAAATTTCAAGTAAAAGTGCAAGAACTGCGTA
GCTCCGCTCGCAGCTCTATCCTACCATTTTAATAATAATAATAATGTATA
CAAGTTCAAGGCACACGAGGGCCTCTGAGAACCGGATCTTGATTGCAATT
GTCTTGTCTCGAATCTTTTCGGATGTTTTTTCCAAGCTTCGTTGAGTCTT
TATTTAAGGATTTTGACAGTCTTTGCCTCTACAACGTATCTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
TTCAAAGAATTCTTGTCATTTGGTGCCTCAAGTAATAATTTTAAAATCTC
ATATTTTCCACGCGAGTATTTTTGGCGAGTTACTTGCCGATATGTTTCTC
GATGGCTGCTGGACGTGTAATCTCAAATTTAATAATGAATAATTATGCGT
GCCATCACTTATGATTAGGGTTACAACCCGCAAATTTTGTAAATCAGGTT
TGTTTTGATTTAACTTTGTATTTTAATGACCAGCCCGATGCAAGTTACCC
GATCTCATCACGGTACCCGCTTAATGAACTATGATTTGAATCTTGTGTAT
GCTCAAAGTCAATTCGTTTGTTAAGTGTCCACTGATTATTGTTTTGATTG
CGATTGTTTAGCCAATGCTCCAATTCTGCCGAAGAAGTGGAAGTTCTTAT
CCTTTAAGGGAACTTATTTTGGCGAGAACTCGAAATTCGGCAAATTAAGT
TCTCACCAAAATTAAAAAAATCGTTGATTCGCCAAAATAAGTTCTCGCCA
AAATTAAAAAAATTGTTGATTCGCCAAAATTAGTTCTCGCCAAAATAAAA
TAAAAAAATTTAATCCACCGTTCGTCAAAATTAGTTCTCACCAAAAAATG
TTCCCTTAAGGTAGTACTAAAGGCGTACAGACTCGCGATTTTTTTACGAA
TTTTGGCCTTTTTCTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCT
ATTTTAATTCACAAGCTTTTTCACATTGGATAAAACCTTTGATATTATTT
CCAACGTCGTATAATATGTTAGAATTGAAGCATCGGTTGAAAAATGGCAA
GCAAAACAATAATTAGTGCACACTTAAAGCGAATAAAACAAAAAAAGTCT
ACTTTACTTTTTCAGGTTGTCCAAATGATGATTGGGAGGTTGGTCAGGGA
AATTCTAGCTTAACAGATGCTAAATTTCATTACAGTATGTCTTCATGCTA
TGTCCATTGCATACATACACACAATAATAGATTAACCCATGCTGGGGTAT
CCTACAACCATTTGCTCCGTAGCTGTAAATGCATTAGCGGTGTGCAACCT
TTAAACTCATTAAGTCTTTGGAGGACATGTTATAAGTGAAAAAACTTTTT
CAATCAGTCACAAAATTTCTTCCTTCAAAGTACTAATTATCATTTCAACA
TTTATATGTACTGTACGTCTTTATCCAAGGAATTATTATAGACACTGGAT
ATTTCAATTCATTCGGTTTTACCGTAAAAAACGATTACTTTAAGGGCATA
AACTGTCGCGGGCAGAAACTTTTGCGTTAATCGCGATTTTGATCCTTTTT
CGCGAAAGTTTCTGCCAGGTCAGAAATTAAACCTTTCCTATTCAGTTTTG
CACTGTTTGCTAAATTGTTGCGTGTTTTATGAGTTTTTGTTACCAAAAAG
GTAAATTTTAAATGAATTCGTGAAAGTTCTATCTGTGAAATTTCGGCTAA
AACCATAATTCGCGAAACTTAAATTCGCTAAATTTCGTGACTTTTTTACT
TCGCGAAACTTTCTGCCCTTAAAGTACATTACTGGTATAATTTCACAAAA
ACATGTACTAGTGAAAAAAAGAAGAAAATAAAAGTAATATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010828XLOC_010828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019289-exon-sc0000323-1575043694:339470..339582TCONS_00019289-exon-sc0000323-1575043694:339470..339582Clytia hemisphaericaexon
TCONS_00019289-exon-sc0000323-1575043694:335940..336667TCONS_00019289-exon-sc0000323-1575043694:335940..336667Clytia hemisphaericaexon
TCONS_00019289-exon-sc0000323-1510915933:339470..339582TCONS_00019289-exon-sc0000323-1510915933:339470..339582Clytia hemisphaericaexon
TCONS_00019289-exon-sc0000323-1510915933:335940..336667TCONS_00019289-exon-sc0000323-1510915933:335940..336667Clytia hemisphaericaexon
TCONS_00019289-exon-sc0000323-1491911889:339470..339582TCONS_00019289-exon-sc0000323-1491911889:339470..339582Clytia hemisphaericaexon
TCONS_00019289-exon-sc0000323-1491911889:335940..336667TCONS_00019289-exon-sc0000323-1491911889:335940..336667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:335940..339582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.76982	3.13884	2.29175	1.85339	2.3923	1.30733	2.81236	2.5728	2.31888	3.11822	1.55915	1.54697	1.27611	2.19187	0.996784	1.18924	1.08835	1.01883	0.266996	0.249776	1.25011	0.712541	1.34507	1.23972	23.896	20.057	0.74116	0.523721	1.49861	1.35889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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