TCONS_00019304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019304
Unique NameTCONS_00019304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019304 ID=TCONS_00019304|Name=TCONS_00019304|organism=Clytia hemisphaerica|type=transcript|length=827bp
GCAAATTTTTACCTTGATTGACCCAGTGGACTTAAAGATATTGTCAATAA
TATAAatgtgggttttgaggtacgtattcaaaaaaagggaaaattttaaa
aagcaatgatataaaaacaatctaacatataacattgaaaaatatCAGGA
ATAACTCTTTTCATGGGACTCCTCGCACCATCAAACAATTTTCTTGATAA
AGGCAgcccaaaaaataattatttaggtCAGAAATTTAGTGTGGGTTTTG
CGGTACATATACCTGTAGAGAAATATCAGCCACTTACCGCTTCCGATATC
ATTCTGATTAAGACCAGAACATTCCGCTTCTCCGTGATCTTCGTTTTCAT
TATGCGAATCAATCAATGCGATTTCAACGGCATTCTCCGTAGTTGGTGCA
ACTTTACACCTTCTTTTCATGAAGGCGAACAATTGCTCCTTTGGCGAAGT
CGCATCAGGTCGAGGTCCAGTATCATCACTCGTAGATGATTTGGTTGTCG
CAAAGCTTGTAAAAAAGGTGATTAAGTTCGAGCAAAATCGGCCGATGGCA
GTTGGTGGTGTTtcttttcgttttcgttttttccGAAATAATTTTGGTCT
TGGGAGGGCGACCATCTTGCAAGGCACGACGAATCTGATATGGTTTACTG
CTCCACTAATATCCACGTATATCGGTTTAGTTATGACGTCAAATCAAACA
TATGCTATTTTTGACGTTACATCGCTGATTAAagaaatttgacgtcaaat
aaaatttaaatttattccaAAAATATAGAATATGTTAAGGATGGTTTCTA
CCACATGAGGTTATAATGATGTTTTGG
Run BLAST on NCBI

protein sequence of TCONS_00019304-protein

>TCONS_00019304-protein ID=TCONS_00019304-protein|Name=TCONS_00019304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MVALPRPKLFRKKRKRKETPPTAIGRFCSNLITFFTSFATTKSSTSDDTG
PRPDATSPKEQLFAFMKRRCKVAPTTENAVEIALIDSHNENEDHGEAECS
GLNQNDIGSGKWLIFLYRYMYRKTHTKFLT
Run BLAST on NCBI

transcript from alignment at sc0000323:246907..247733

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019304 ID=TCONS_00019304|Name=TCONS_00019304|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at sc0000323:246907..247733 (Clytia hemisphaerica)
CCAAAACATCATTATAACCTCATGTGGTAGAAACCATCCTTAACATATTC
TATATTTTtggaataaatttaaattttatttgacgtcaaatttctTTAAT
CAGCGATGTAACGTCAAAAATAGCATATGTTTGATTTGACGTCATAACTA
AACCGATATACGTGGATATTAGTGGAGCAGTAAACCATATCAGATTCGTC
GTGCCTTGCAAGATGGTCGCCCTCCCAAGACCAAAATTATTTCggaaaaa
acgaaaacgaaaagaAACACCACCAACTGCCATCGGCCGATTTTGCTCGA
ACTTAATCACCTTTTTTACAAGCTTTGCGACAACCAAATCATCTACGAGT
GATGATACTGGACCTCGACCTGATGCGACTTCGCCAAAGGAGCAATTGTT
CGCCTTCATGAAAAGAAGGTGTAAAGTTGCACCAACTACGGAGAATGCCG
TTGAAATCGCATTGATTGATTCGCATAATGAAAACGAAGATCACGGAGAA
GCGGAATGTTCTGGTCTTAATCAGAATGATATCGGAAGCGGTAAGTGGCT
GATATTTCTCTACAGGTATATGTACCGCAAAACCCACACTAAATTTCTGa
cctaaataattattttttgggcTGCCTTTATCAAGAAAATTGTTTGATGG
TGCGAGGAGTCCCATGAAAAGAGTTATTCCTGatatttttcaatgttata
tgttagattgtttttatatcattgctttttaaaattttccctttttttga
atacgtacctcaaaacccacatTTATATTATTGACAATATCTTTAAGTCC
ACTGGGTCAATCAAGGTAAAAATTTGC

Coding sequence (CDS) from alignment at sc0000323:246907..247733

>TCONS_00019304 ID=TCONS_00019304|Name=TCONS_00019304|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0000323:246907..247733 (Clytia hemisphaerica)
ATGGTCGCCCTCCCAAGACCAAAATTATTTCggaaaaaacgaaaacgaaa
agaAACACCACCAACTGCCATCGGCCGATTTTGCTCGAACTTAATCACCT
TTTTTACAAGCTTTGCGACAACCAAATCATCTACGAGTGATGATACTGGA
CCTCGACCTGATGCGACTTCGCCAAAGGAGCAATTGTTCGCCTTCATGAA
AAGAAGGTGTAAAGTTGCACCAACTACGGAGAATGCCGTTGAAATCGCAT
TGATTGATTCGCATAATGAAAACGAAGATCACGGAGAAGCGGAATGTTCT
GGTCTTAATCAGAATGATATCGGAAGCGGTAAGTGGCTGATATTTCTCTA
CAGGTATATGTACCGCAAAACCCACACTAAATTTCTGacctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010839XLOC_010839Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019304-proteinTCONS_00019304-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019304-exon-sc0000323-1491911889:246907..247733TCONS_00019304-exon-sc0000323-1491911889:246907..247733Clytia hemisphaericaexon
TCONS_00019304-exon-sc0000323-1510915933:246907..247733TCONS_00019304-exon-sc0000323-1510915933:246907..247733Clytia hemisphaericaexon
TCONS_00019304-exon-sc0000323-1575043694:246907..247733TCONS_00019304-exon-sc0000323-1575043694:246907..247733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000323supercontigsc0000323:246907..247733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139905	0.0630611	0.198708	0.0809946	0.293264	0.0717988	0.111112	0.193646	0	0.234057	0.0843597	0	0	0	0	0.0804433	0	0.0441715	0	0.0638586	0.129858	0.185771	0.0658221	0	0.161201	0.344893	0	0	0.0933733	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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