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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019305 ID=TCONS_00019305|Name=TCONS_00019305|organism=Clytia hemisphaerica|type=transcript|length=1510bp
AGACAAACGATCATTGGTCATTTTGACTGTCAAAGACACCACCCATCAGC
CCGCTAACAGCATTCGCAATAGCACTTGACGCTATGTCACGAGAAACCGC
ACCAATCGCATTCGAATCTGTTTTCTCGGAACAGGAAGAATCCACCATCA
CCGAGTAATCATCAAAATCTGATTGAATGGCCGATTTAGGGCGGAAGCCT
CGGGGTAGGGCGGAAAACGGTTTTAAGGGCGGTAGTTTTTTCGGTGGTGG
GGTTTTCACATTATCGATTTTGATGCCGCTATCAGTGACATCGCCAGGGT
TGGCAACACGGTTAATAGAATCTGCATTAGGTACAATAACCTGTTCAACA
TCTTCTACAATGAGGTCATTAGCTTGCTTAGAACTCGATGGTAACAATCC
AGTGGCAAGGCTCAACACACTGAACAATTCAGCAAAGCCACCGTCAGCTG
AAGCCGTACAGCCGTTTAAGTCACAGTGAACATCTTCTTTTAAATTCGTC
GATGCATCAACCTTTGACTCTCGTTTTGtatcttgtttttgttttcgtcC
AATAGAAGAAACAAACCTGTTATCTACAAGCGCGATAGGGGGATTTTTCT
TAGTTTGAGTATTTTGAGGGTTTTCCATCAATCCACCCGTTTCACATTGT
TCTTGCAACGGGACAGAGGTTTTGGACAGCGGAAGCTGTGTTCCGGAAGA
TATTCGAACCACCTTTTCTCCAGTTTGTTCTGAATCATCCTTTGCaacct
tcttcttcttcttctttttcaatttcggTTTCAGCGGAATGGAGATTTTG
TTCATAGGTAACTGCGACCCATCGACTGTAGTTTGTATCGGTGGTAAGCG
GTAAGGCGGGGCGGCATTGGAGTCATGCCCTGGCTTGGGACTATCAACTA
TGGGTGGCAAAGTCATGGTTTGAGGATCAAGACTGGGGCTAGTGGCATCA
CATTCTGACATTCCTTCCACTCCTTTTACAGGCTTTTTCCTCTTCTTTAC
AATTGGAACCGAGGATTTGAATATCGGCATCTGCGACCCATCAGCTGTAT
GTTGGAGGTTTATAGAAGCATTATAAATACCATTCTCTCCGTCACATGGT
AAATCATCCTTATCGGGGGACGCTTCCGTAACAATATCGAGGTGATTTTC
CAAATTATCTTTGTCCGGTGTTGTATCAGGGGCGGCTGATACGTCACATG
GGTGGTCATTGGCATTCACTTGCACCACACTAGTTGTAGATGGGCGGTAA
TGAATGGAGCGCGTAGAGGTTTTGGAATGCGATGACTTTGGATCGGTTTC
CTGATTACAATCGACGTTGTCACATCCGGTACATTCGAGGGACGGGCTTA
ATACAGGAGGTATTTGATTGACGGCATTGGCAGCGTCGCTCTCCGGAGAA
ATTTGCTTCGTATCTAAATTTGGAAAAAGTGGAGCATGTAGAATAATATA
TCATTATTATACTTCAGTCAACAATCTCTAAATTGAGcctctattatttg
aatcttcCCG Run BLAST on NCBI protein sequence of TCONS_00019305-protein >TCONS_00019305-protein ID=TCONS_00019305-protein|Name=TCONS_00019305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MPIFKSSVPIVKKRKKPVKGVEGMSECDATSPSLDPQTMTLPPIVDSPKP
GHDSNAAPPYRLPPIQTTVDGSQLPMNKISIPLKPKLKKKKKKKVAKDDS
EQTGEKVVRISSGTQLPLSKTSVPLQEQCETGGLMENPQNTQTKKNPPIA
LVDNRFVSSIGRKQKQDTKRESKVDASTNLKEDVHCDLNGCTASADGGFA
ELFSVLSLATGLLPSSSKQANDLIVEDVEQVIVPNADSINRVANPGDVTD
SGIKIDNVKTPPPKKLPPLKPFSALPRGFRPKSAIQSDFDDYSVMVDSSC
SEKTDSNAIGAVSRDIASSAIANAVSGLMGGVFDSQNDQ Run BLAST on NCBI transcript from alignment at sc0000323:248917..250426 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019305 ID=TCONS_00019305|Name=TCONS_00019305|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at sc0000323:248917..250426 (Clytia hemisphaerica)
CGGgaagattcaaataatagaggCTCAATTTAGAGATTGTTGACTGAAGT
ATAATAATGATATATTATTCTACATGCTCCACTTTTTCCAAATTTAGATA
CGAAGCAAATTTCTCCGGAGAGCGACGCTGCCAATGCCGTCAATCAAATA
CCTCCTGTATTAAGCCCGTCCCTCGAATGTACCGGATGTGACAACGTCGA
TTGTAATCAGGAAACCGATCCAAAGTCATCGCATTCCAAAACCTCTACGC
GCTCCATTCATTACCGCCCATCTACAACTAGTGTGGTGCAAGTGAATGCC
AATGACCACCCATGTGACGTATCAGCCGCCCCTGATACAACACCGGACAA
AGATAATTTGGAAAATCACCTCGATATTGTTACGGAAGCGTCCCCCGATA
AGGATGATTTACCATGTGACGGAGAGAATGGTATTTATAATGCTTCTATA
AACCTCCAACATACAGCTGATGGGTCGCAGATGCCGATATTCAAATCCTC
GGTTCCAATTGTAAAGAAGAGGAAAAAGCCTGTAAAAGGAGTGGAAGGAA
TGTCAGAATGTGATGCCACTAGCCCCAGTCTTGATCCTCAAACCATGACT
TTGCCACCCATAGTTGATAGTCCCAAGCCAGGGCATGACTCCAATGCCGC
CCCGCCTTACCGCTTACCACCGATACAAACTACAGTCGATGGGTCGCAGT
TACCTATGAACAAAATCTCCATTCCGCTGAAAccgaaattgaaaaagaag
aagaagaagaaggttGCAAAGGATGATTCAGAACAAACTGGAGAAAAGGT
GGTTCGAATATCTTCCGGAACACAGCTTCCGCTGTCCAAAACCTCTGTCC
CGTTGCAAGAACAATGTGAAACGGGTGGATTGATGGAAAACCCTCAAAAT
ACTCAAACTAAGAAAAATCCCCCTATCGCGCTTGTAGATAACAGGTTTGT
TTCTTCTATTGgacgaaaacaaaaacaagataCAAAACGAGAGTCAAAGG
TTGATGCATCGACGAATTTAAAAGAAGATGTTCACTGTGACTTAAACGGC
TGTACGGCTTCAGCTGACGGTGGCTTTGCTGAATTGTTCAGTGTGTTGAG
CCTTGCCACTGGATTGTTACCATCGAGTTCTAAGCAAGCTAATGACCTCA
TTGTAGAAGATGTTGAACAGGTTATTGTACCTAATGCAGATTCTATTAAC
CGTGTTGCCAACCCTGGCGATGTCACTGATAGCGGCATCAAAATCGATAA
TGTGAAAACCCCACCACCGAAAAAACTACCGCCCTTAAAACCGTTTTCCG
CCCTACCCCGAGGCTTCCGCCCTAAATCGGCCATTCAATCAGATTTTGAT
GATTACTCGGTGATGGTGGATTCTTCCTGTTCCGAGAAAACAGATTCGAA
TGCGATTGGTGCGGTTTCTCGTGACATAGCGTCAAGTGCTATTGCGAATG
CTGTTAGCGGGCTGATGGGTGGTGTCTTTGACAGTCAAAATGACCAATGA
TCGTTTGTCT Coding sequence (CDS) from alignment at sc0000323:248917..250426 >TCONS_00019305 ID=TCONS_00019305|Name=TCONS_00019305|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000323:248917..250426 (Clytia hemisphaerica)
ATGCCGATATTCAAATCCTCGGTTCCAATTGTAAAGAAGAGGAAAAAGCC
TGTAAAAGGAGTGGAAGGAATGTCAGAATGTGATGCCACTAGCCCCAGTC
TTGATCCTCAAACCATGACTTTGCCACCCATAGTTGATAGTCCCAAGCCA
GGGCATGACTCCAATGCCGCCCCGCCTTACCGCTTACCACCGATACAAAC
TACAGTCGATGGGTCGCAGTTACCTATGAACAAAATCTCCATTCCGCTGA
AAccgaaattgaaaaagaagaagaagaagaaggttGCAAAGGATGATTCA
GAACAAACTGGAGAAAAGGTGGTTCGAATATCTTCCGGAACACAGCTTCC
GCTGTCCAAAACCTCTGTCCCGTTGCAAGAACAATGTGAAACGGGTGGAT
TGATGGAAAACCCTCAAAATACTCAAACTAAGAAAAATCCCCCTATCGCG
CTTGTAGATAACAGGTTTGTTTCTTCTATTGgacgaaaacaaaaacaaga
taCAAAACGAGAGTCAAAGGTTGATGCATCGACGAATTTAAAAGAAGATG
TTCACTGTGACTTAAACGGCTGTACGGCTTCAGCTGACGGTGGCTTTGCT
GAATTGTTCAGTGTGTTGAGCCTTGCCACTGGATTGTTACCATCGAGTTC
TAAGCAAGCTAATGACCTCATTGTAGAAGATGTTGAACAGGTTATTGTAC
CTAATGCAGATTCTATTAACCGTGTTGCCAACCCTGGCGATGTCACTGAT
AGCGGCATCAAAATCGATAATGTGAAAACCCCACCACCGAAAAAACTACC
GCCCTTAAAACCGTTTTCCGCCCTACCCCGAGGCTTCCGCCCTAAATCGG
CCATTCAATCAGATTTTGATGATTACTCGGTGATGGTGGATTCTTCCTGT
TCCGAGAAAACAGATTCGAATGCGATTGGTGCGGTTTCTCGTGACATAGC
GTCAAGTGCTATTGCGAATGCTGTTAGCGGGCTGATGGGTGGTGTCTTTG
ACAGTCAAAATGACCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019305-exon-sc0000323-1491911889:248917..250426 | TCONS_00019305-exon-sc0000323-1491911889:248917..250426 | Clytia hemisphaerica | exon |
| TCONS_00019305-exon-sc0000323-1510915933:248917..250426 | TCONS_00019305-exon-sc0000323-1510915933:248917..250426 | Clytia hemisphaerica | exon |
| TCONS_00019305-exon-sc0000323-1575043694:248917..250426 | TCONS_00019305-exon-sc0000323-1575043694:248917..250426 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000323 | supercontig | sc0000323:248917..250426 . |
Blast
The following BLAST results are available for this feature:
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