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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019316 ID=TCONS_00019316|Name=TCONS_00019316|organism=Clytia hemisphaerica|type=transcript|length=2536bpRun BLAST on NCBI transcript from alignment at sc0000325:151758..173126+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019316 ID=TCONS_00019316|Name=TCONS_00019316|organism=Clytia hemisphaerica|type=transcript|length=21369bp|location=Sequence derived from alignment at sc0000325:151758..173126+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019316 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.973e-31 Identity = 64/170 (37.65%), Postives = 82/170 (48.24%), Query Frame = 3
Query: 1086 GFGQWSLWSSCSATCN-GTKQRSREC--------FDYCYGDSLETEQCGVAQCPIHGGFRQWTKWSNCTKECNNGLRYRERKCDQPRPQFNGFPCYGVTNETELCNVHLCPVDAIWSEWSPWSGCDKPCNNGSYIRKRFCTNAMYE-GINRCGHEDVQIDKSSCNQHNCP 1565
GF QWS W +CS TC G ++RSR C C G LE C CP+ G + +W+ W CT+ C G + R R C+ P Q G PC G E +CN+ CPV WS W PW C + C G+ R R C N G + C + Q+ CN+ NCP
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQ--VCNERNCP 4698 HSP 2 Score: 127.487 bits (319), Expect = 1.381e-29 Identity = 58/169 (34.32%), Postives = 82/169 (48.52%), Query Frame = 3
Query: 1089 FGQWSLWSSCSATCNG-TKQRSRECFD--------YCYGDSLETEQCGVAQCPIHGGFRQWTKWSNCTKECNNGLRYRERKCDQPRPQFNGFPCYGVTNETELCNVHLCPVDAIWSEWSPWSGCDKPCNNGSYIRKRFCTNAM-YEGINRCGHEDVQIDKSSCNQHNCP 1565
+ W+ WS+CS +C G +QR+R C D C G ++++ C CP HG + W+ W C++ CN G R R CD P P G C G ++ + CN +CPVD W W WS C C G RKR C + + +G C + Q+ + CN CP
Sbjct: 4703 WATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTR--CNVQACP 4869 HSP 3 Score: 124.79 bits (312), Expect = 7.645e-29 Identity = 62/170 (36.47%), Postives = 78/170 (45.88%), Query Frame = 3
Query: 1086 GFGQWSLWSSCSATCN-GTKQRSRECFD--------YCYGDSLETEQCGVAQCPIHGGFRQWTKWSNCTKECNNGLRYRERKCDQPRPQFNGFPCYGVTNETELCNVHLCPVDAIWSEWSPWSGCDKPCNNGSYIRKRFCTN-AMYEGINRCGHEDVQIDKSSCNQHNCP 1565
+ W W +CS +C GT+ R+R C + YC G + + C CPIHG + W WS C+ C G R R R C P PQ+ G C G +++ CN CP WS WS W C + CN G R R C N G CG D QI + CN CP
Sbjct: 4645 AWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQR--CNTDMCP 4812 HSP 4 Score: 123.635 bits (309), Expect = 1.909e-28 Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 3
Query: 1089 FGQWSLWSSCSATCN-GTKQRSRECFDY--------CYGDSLETEQCGVAQCPIHGGFRQWTKWSNCTKECNNGLRYRERKCDQPRPQFNGFPCYGVTNETELCNVHLCPVDAIWSEWSPWSGCDKPCNNGSYIRKRFCTNAMYE-GINRCGHEDVQIDKSSCNQHNCP 1565
+ +WSLW C+ +C G + R+R C + C G+++E C + CP+HG + W W C++ C G + R R C+ P P F G C G + ++CN CP+ W+ W+ WS C C G+ R R C++ + + G +C DVQ D CN CP
Sbjct: 4589 WSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSD--FCNSDPCP 4755 HSP 5 Score: 98.2117 bits (243), Expect = 1.236e-20 Identity = 47/116 (40.52%), Postives = 58/116 (50.00%), Query Frame = 3
Query: 1221 IHGGFRQWTKWSNCTKECNNGLRYRERKCDQPRPQFNGFPCYGVTNETELCNVHLCPVDAIWSEWSPWSGCDKPCNNGSYIRKRFCTN-AMYEGINRCGHEDVQIDKSSCNQHNCP 1565
+HGGF QW+ W C+ C G++ R R C+QP P G PC G E C CPVD WSEWS W C + C G+ R R C N ++ G C V+I CN CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEI--IMCNIRPCP 4641 The following BLAST results are available for this feature:
BLAST of TCONS_00019316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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