TCONS_00019320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019320
Unique NameTCONS_00019320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length977

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019320 ID=TCONS_00019320|Name=TCONS_00019320|organism=Clytia hemisphaerica|type=transcript|length=977bp
TCTAGATGTGGTTGACACACTAAATGAGACAACAACCAGAATCGCTAGCA
CGAAAAGTAAGAAGAATCCATGTAGTTCATCACCGTGTTATCCCTTCGTT
GCGTGTACACCAAAAGGTGAAGACTCATTCACGTGCGGAAGGTGCCCTAT
AGGTATGGAAGGAAATGGTTCTACTTGTACAGACATTNGTTTACGTGTGG
AAGGTGCCCTATTGGTATGGAAGGAAATGGTTCTACTTGTACAGACATTA
ATGAGTGTTTAGAGAACCCTTGCTCTCCATTGACCAAATGTGAAAACAGG
CTTCCTGGCTATGTATGTCACCAATGTCCATCAGGCTATAAAGGTGAACA
ACTTGTTGGCATTGGGAGAGAACATGCAAGATTGAAGAAACAGGTTTGCA
TAGATATTGATGAATGTTTGGTTGGAACACACAAGTGTGATGACAACGCT
ATCTGCATCAACAAAAAGGGATCATATGAGTGTGGGCCATGTAGATCTGG
ATATCGGAAAGGTATTGATAGCAATTGTGTACATTTGGAGATTTGCAGAG
GACGGCCAGGATCACCAAGTAACCCATGCTCAAAATACGCCACTTGTCAT
CCCATTTCTGGAGGAGCTCTCTGCAAGTGTCGACCATCAATGGCTGGAGA
TGGATATCATTGCGGTAAAGATACTGACGGAGATGGGATCCCTGACCAAC
AACTCCAATGTGATTCAAAGCATTGTCAAAAGGATAATTGCATGAACACA
CCGAACAGTGGGCAATCAGACCTGGATGACGACGGTAAAGGTGATGCGTG
TGACACTGATCTAGATGGCGATGGTATTTATAATCAAGTGGACAATTGTC
CACGTCATTCGAATCATGATCAATCGAATAGTGATAATGACAAAATAGGG
GACGCCTGTGATAATTGTTTGTTTACAAAGAATGACCATCAACAGGATGT
CGATGGAGATGGGATCGGTGATGCTTG
Run BLAST on NCBI

protein sequence of TCONS_00019320-protein

>TCONS_00019320-protein ID=TCONS_00019320-protein|Name=TCONS_00019320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MEGNGSTCTDINECLENPCSPLTKCENRLPGYVCHQCPSGYKGEQLVGIG
REHARLKKQVCIDIDECLVGTHKCDDNAICINKKGSYECGPCRSGYRKGI
DSNCVHLEICRGRPGSPSNPCSKYATCHPISGGALCKCRPSMAGDGYHCG
KDTDGDGIPDQQLQCDSKHCQKDNCMNTPNSGQSDLDDDGKGDACDTDLD
GDGIYNQVDNCPRHSNHDQSNSDNDKIGDACDNCLFTKNDHQQDVDGDGI
GDA
Run BLAST on NCBI

transcript from alignment at sc0000325:272331..277191+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019320 ID=TCONS_00019320|Name=TCONS_00019320|organism=Clytia hemisphaerica|type=transcript|length=4861bp|location=Sequence derived from alignment at sc0000325:272331..277191+ (Clytia hemisphaerica)
TCTAGATGTGGTTGACACACTAAATGAGACAACAACCAGAATCGCTAGCA
CGAAAAGTAAGAAGAATCCATGTAGTTCATCACCGTGTTATCCCTTCGTT
GCGTGTACACCAAAAGGTGAAGACTCATTCACGTGCGGAAGGTGCCCTAT
AGGTATGGAAGGAAATGGTTCTACTTGTACAGACATTNGTTTACGTGTGG
AAGGTGCCCTATTGGTATGGAAGGAAATGGTTCTACTTGTACAGACATTA
ATGAGGTGAGTTTACATTGCATTTAAATTATTTCCAATATTCTCATGAAG
TAGAATGTTTAACCATTCATAAAATTCTTTCTCACAGAGACCCGTTGAGT
ACCCCTCCATCTGGAAAAAATTGCCCAAAATAACGTCCTCTGTGGAAAAT
TTAACTCTAACTGAATCCCACTGAATTTGCAAAATTTGTAtgatggaatt
caaatccccagctcCCAAAAACATAGGAATACCAATCCCAATTAAATTTT
AGTCTGTCTTTTTTCTCTCCACTGGCTAAAAAAGTCTTACCAGGTATGTT
CACGGCGATCTGTAACCGGATTAAtcagattcaaaatttttggttttggc
caaattttgaaaaaatggctgaGAAGAGCACATTCTCTcaaaaattttag
ctttttccAATCctgaattattattttttccgaTTTTATTCCACCCGGGA
TGAGGAAGGGATAGAGGGgtctctcgaaaacgaaagtgtcctGGTACCTG
GTGAATGTAtcaaaaacttctttcttctactTTTGCCTTGTTATGAGATG
ACTTTGTGTGCAAAAGTTCATCTCCATATGGACACTAATTTTGGAGATTC
AGGGGAAACTATAGCCgaaataatcccgatttttttaaagttccaGAGAA
AGATCATCGTGGTTAGAATTGGGTGTTTCTTAGCGTGtgacaatatttca
ttttctctCTTTTCAGTGTTTAGAGAACCCTTGCTCTCCATTGACCAAAT
GTGAAAACAGGCTTCCTGGCTATGTATGTCACCAATGTCCATCAGGCTAT
AAAGGTGAACAACTTGTTGGCATTGGGAGAGAACATGCAAGATTGAAGAA
ACAGGTAGCCAGTCTATTAACCCTATATCACAGAGCCACTGCGAGACCAG
CCCTGCTGGAAAATGTGACAAAAAGTACGtctccggtgggaaaataccct
ggaatttcagcccaaataggaaattgactttgatttcatccctattCGAA
ACTCAATGtataaaaattgcactccaaaaccatccccactggattctTTA
AccgcttgaaacaaaagaatttttatccccattgggatttcaattggAAG
TTTTATCctaactgaggaaaaaagttccaccgaggCTGTGATACAGAGGT
GTTATTAACAACTTTTGGCAATTCAAAAAGCCAATTCGCATTAGAAAGCG
GTTTGgtgtttgttgaaaagatattcaagagtagaatatcatcaaaaaga
aaaattggaggttttaaacattagaaaaacgttgaaacaatgttttttGT
AATCATTGTGGAGACAACATGTCAACGGAAGAATAACAGCAAACCCACTG
TGTATGGAAGCTAGATGTAATTTCGCCTAATTATATTTAAGGTTTGCATA
GATATTGATGAATGTTTGGTTGGAACACACAAGTGTGATGACAACGCTAT
CTGCATCAACAAAAAGGTAAAGTAGTCCTGGTCAGTGAAGCTTTAAGATT
TGCATCGTTTTTGGCCTCTTCGGGGCTTTAACCTCAATGGTCTATAGTAC
TGCTTACTCTAATCAAGCCTTCGGTCATTGCCTCAGATTTTTCTTCGTGA
CAGGATGATGCGTAagattatattttaaaaagctCAAGCGATGTGATAGA
CGGCTCTGTACCAGCCGCCGTGTGAATACTTTTTAAGTGTTGTTACATGT
TtttctatataagaacatccaaaagccTCTTAACTTTTGTTCATAAATtt
gttctcaacatgttcttactttcaccattatgtgagcatttttggcaatt
tttctaaatagttgttttagagtccacaaagccttaaaatgttcttaact
tgttcttaatatttttgtcatcgAATCATTATGTTCTTTAAGAAGGGACA
TCCGACAATTCTCTTTATTTTCAACACTTAACAAAGTATTTAGAATAACA
CCACTTAAAAAAGTATCTACACAACGGCTGGTGCAGAACTGGTTGTCTCA
TAACCATACCAATTAGTAAaatcttatttatttttgaaccaTCAGGGATC
ATATGAGTGTGGGCCATGTAGATCTGGATATCGGAAAGGTATTGATAGCA
ATTGTGTACATTTGGAGATTTGCAGAGGACGGCCAGGATCACCAAGTAAC
CCATGCTCAAAATACGCCACTTGTCATCCCATTTCTGGAGGAGCTCTCTG
CAAGGTGTAATATTATAattgttttattcaaaatgtttaGTTGATTCAAA
TGGTGTAGAATTTAACATANTTGATTGAAAAtgttcaatacaccttttcg
atcaTAGCTGCTAATTTCCGAGCGggtattttttgtccgttttaccacca
tAAAACCGTCCAAATCTCTTTTTGGctaatcgccaaattaaatccacgct
aAAATTAAATCCACTTAAACCTTCAAACCGGGCAAATGTCTATACAAGTT
TTTAATTCGCCAATATACCGAGTCTCAGACTTAAGAggataactcctgac
cacttgattataaaaagattataaaaatacctttttaatggtaccaaaac
cattgTCTAACTCTCAAGTTACAAACTGGATGTTGCGCGCTGCAAAGGTA
AAGGCAATGAGACTTCTTTCTTGGCAATTTCAGTGTCGACCATCAATGGC
TGGAGATGGATATCATTGCGGTAAAGATACTGACGGAGATGGGATCCCTG
ACCAACAACTCCAATGTGATTCAAAGCATTGTCAAAAGGtaacattgggc
tcttccagaaaaaatccgttcatggggggtggaggatgaattgtcacagg
ggtattgaaaaaataccaaaaaattgcaatgtccagggggtaaattccaa
tgtccaggggttgatttgatgtttgtccaggggtataacccgtgtccagg
gggttaaaaatcaaaatgtccaggggtaattcatgaaaaaaaataatata
tcctccaccccccatgaacggattttttctggaagagcccattttagTAT
TAAAAAGATCTAGTGTAAAAGTTTTTCAAGGCAAAGACTGATTGGTTAAG
CGTTGAAATTTTACTGTAATGTCACGAGACCAAGGTagaatttcctacct
aaccacggcacacttttcagcaaaagcacgacaTAGCCCTTCGTGCTTTA
TAAATCTGTTGAATCAACAATATTGGTAAAAGATGTTTTAGTGAGTTTAT
GCATCGAGTTTTTTCTATGGAAGAGACTGTCCGATTATCCATTGAGTGGC
ATGAAACTTTGCTTCAATAATGATGGAAAAACAGAATTGCAGTGCAATTT
GGAATTTTGTCAAAAGGTTTAAAATCACTGTAAAAGTATATCTTTTTTAC
GATTATGCAGGCTTCAACACGCGTCAATCTTGTTGTCTTGCCAGGCAAAA
TCTTCCGATATTGAAAATCTGTGATTCTTTTTCGATTAAGATTCTGTGTG
TTGGTCGACAAAATTAGAGTGGGTAAGAACTGTGTGAATATCAGCGATGT
TTCTTATCTATTGAAGGATAATTGCATGAACACACCGAACAGTGGGCAAT
CAGACCTGGATGACGACGGTAAAGGTGATGCGTGTGACACTGATCTAGAT
GGCGATGGTATTTATAATCAAGTGGTAAGTTTAGTCTATGGTTAGCTAGA
GAGCTTCTGACTACGGGTATAATCGAAAAAAGAGGTCAAAATATCCAAGA
AGCAACGAAACCATATCTTTTTCCATAACAACAATTCAAGGAAAAAATCA
TTTCTCACCTCTTGTTTTCTTCTTAACCGTCAAACTAAAAAGATGCCACC
GTCAATTTTTAACGTCTACATCTCTTGTCTAAAACATCCAGGTGAAATGG
AGTTTTCATAAGATATTTTAATAATTGGGTcatcatttgaagtaataaaa
atgatgcgttctttagaaattgttttattactggttaacgggGTCCCcgc
agcggtttgcgtgaatgcgtgaatgcgtgaatgggcattttcgattgcgt
gaatgtgtgaaaattgaaaaaaaatgcgaGAATgcttgaattgaaaaaac
ttgcgtgaacgtgaaaatccccTTTTTGATTGCGGGAATGCATGAAtgtg
ggctattttgtgcgtgaatacgtgaatttttccttttttccaccgattat
gtgcagttttcccaattttccaatgtttcctcgatttttgccaaaaattt
tccgattttctgaaaaatcggtttattgcgtgaaactggaggaaaatttg
cgtgaatgcgtgaatttcgaaaaaaaattgcgtgaattgagggtccgctg
gggggcctcgttagcgaccaaccaaatcaaagaagagcttgtaaaaactc
catcgcGTTCCAAAACATCCTATGTATTATTAACAatactattttttcaa
attcataattATCAGGGTGGAGAGCTGCGCTTCAGGCTTATGTTCCATac
aaattataattttcatgtttCTAGGACAATTGTCCACGTCATTCGAATCA
TGATCAATCGAATAGTGATAATGACAAAATAGGGGACGCCTGTGATAATT
GTTTGTTTACAAAGAATGACCATCAACAGGATGTCGATGGAGATGGGATC
GGTGATGCTTG

Coding sequence (CDS) from alignment at sc0000325:272331..277191+

>TCONS_00019320 ID=TCONS_00019320|Name=TCONS_00019320|organism=Clytia hemisphaerica|type=CDS|length=5313bp|location=Sequence derived from alignment at sc0000325:272331..277191+ (Clytia hemisphaerica)
ATGGAAGGAAATGGTTCTACTTGTACAGACATTAATGAGTGTTTAGAGAA
CCCTTGCTCTCCATTGACCAAATGTGAAAACAGGCTTCCTGGCTATGTAT
GTCACCAATGTCCATCAGGCTATAAAGGTGAACAACTTGTTGGCATTGGG
AGAGAACATGCAAGATTGAAGAAACAGGTTTGCATAGATATTGATGAATG
TTTGGTTGGAACACACAAGTGTGATGACAACGCTATCTGCATCAACAAAA
AGGGATCATATGAGTGTGGGCCATGTAGATCTGGATATCGGAAAGGTATT
GATAGCAATTGTGTACATTTGGAGATTTGCAGAGGACGGCCAGGATCACC
AAGTAACCCATGCTCAAAATACGCCACTTGTCATCCCATTTCTGGAGGAG
CTCTCTGCAAGTGTCGACCATCAATGGCTGGAGATGGATATCATTGCGGT
AAAGATACTGACGGAGATGGGATCCCTGACCAACAACTCCAATGTGATTC
AAAGCATTGTCAAAAGGATAATTGCATGAACACACCGAACAGTGGGCAAT
CAGACCTGGATGACGACGGTAAAGGTGATGCGTGTGACACTGATCTAGAT
GGCGATGGTATTTATAATCAAGTGGACAATTGTCCACGTCATTCGAATCA
TGATCAATCGAATAGTGATAATGACAAAATAGGGGACGCCTGTGATAATT
GTTTGTTTACAAAGAATGACCATCAACAGGATGTCGATGGAGATGGGATC
GGTGATGCTATGGAAGGAAATGGTTCTACTTGTACAGACATTAATGAGTG
TTTAGAGAACCCTTGCTCTCCATTGACCAAATGTGAAAACAGGCTTCCTG
GCTATGTATGTCACCAATGTCCATCAGGCTATAAAGGTGAACAACTTGTT
GGCATTGGGAGAGAACATGCAAGATTGAAGAAACAGGTTTGCATAGATAT
TGATGAATGTTTGGTTGGAACACACAAGTGTGATGACAACGCTATCTGCA
TCAACAAAAAGGGATCATATGAGTGTGGGCCATGTAGATCTGGATATCGG
AAAGGTATTGATAGCAATTGTGTACATTTGGAGATTTGCAGAGGACGGCC
AGGATCACCAAGTAACCCATGCTCAAAATACGCCACTTGTCATCCCATTT
CTGGAGGAGCTCTCTGCAAGTGTCGACCATCAATGGCTGGAGATGGATAT
CATTGCGGTAAAGATACTGACGGAGATGGGATCCCTGACCAACAACTCCA
ATGTGATTCAAAGCATTGTCAAAAGGATAATTGCATGAACACACCGAACA
GTGGGCAATCAGACCTGGATGACGACGGTAAAGGTGATGCGTGTGACACT
GATCTAGATGGCGATGGTATTTATAATCAAGTGGACAATTGTCCACGTCA
TTCGAATCATGATCAATCGAATAGTGATAATGACAAAATAGGGGACGCCT
GTGATAATTGTTTGTTTACAAAGAATGACCATCAACAGGATGTCGATGGA
GATGGGATCGGTGATGCTATGGAAGGAAATGGTTCTACTTGTACAGACAT
TAATGAGTGTTTAGAGAACCCTTGCTCTCCATTGACCAAATGTGAAAACA
GGCTTCCTGGCTATGTATGTCACCAATGTCCATCAGGCTATAAAGGTGAA
CAACTTGTTGGCATTGGGAGAGAACATGCAAGATTGAAGAAACAGGTTTG
CATAGATATTGATGAATGTTTGGTTGGAACACACAAGTGTGATGACAACG
CTATCTGCATCAACAAAAAGGGATCATATGAGTGTGGGCCATGTAGATCT
GGATATCGGAAAGGTATTGATAGCAATTGTGTACATTTGGAGATTTGCAG
AGGACGGCCAGGATCACCAAGTAACCCATGCTCAAAATACGCCACTTGTC
ATCCCATTTCTGGAGGAGCTCTCTGCAAGTGTCGACCATCAATGGCTGGA
GATGGATATCATTGCGGTAAAGATACTGACGGAGATGGGATCCCTGACCA
ACAACTCCAATGTGATTCAAAGCATTGTCAAAAGGATAATTGCATGAACA
CACCGAACAGTGGGCAATCAGACCTGGATGACGACGGTAAAGGTGATGCG
TGTGACACTGATCTAGATGGCGATGGTATTTATAATCAAGTGGACAATTG
TCCACGTCATTCGAATCATGATCAATCGAATAGTGATAATGACAAAATAG
GGGACGCCTGTGATAATTGTTTGTTTACAAAGAATGACCATCAACAGGAT
GTCGATGGAGATGGGATCGGTGATGCTATGGAAGGAAATGGTTCTACTTG
TACAGACATTAATGAGTGTTTAGAGAACCCTTGCTCTCCATTGACCAAAT
GTGAAAACAGGCTTCCTGGCTATGTATGTCACCAATGTCCATCAGGCTAT
AAAGGTGAACAACTTGTTGGCATTGGGAGAGAACATGCAAGATTGAAGAA
ACAGGTTTGCATAGATATTGATGAATGTTTGGTTGGAACACACAAGTGTG
ATGACAACGCTATCTGCATCAACAAAAAGGGATCATATGAGTGTGGGCCA
TGTAGATCTGGATATCGGAAAGGTATTGATAGCAATTGTGTACATTTGGA
GATTTGCAGAGGACGGCCAGGATCACCAAGTAACCCATGCTCAAAATACG
CCACTTGTCATCCCATTTCTGGAGGAGCTCTCTGCAAGTGTCGACCATCA
ATGGCTGGAGATGGATATCATTGCGGTAAAGATACTGACGGAGATGGGAT
CCCTGACCAACAACTCCAATGTGATTCAAAGCATTGTCAAAAGGATAATT
GCATGAACACACCGAACAGTGGGCAATCAGACCTGGATGACGACGGTAAA
GGTGATGCGTGTGACACTGATCTAGATGGCGATGGTATTTATAATCAAGT
GGACAATTGTCCACGTCATTCGAATCATGATCAATCGAATAGTGATAATG
ACAAAATAGGGGACGCCTGTGATAATTGTTTGTTTACAAAGAATGACCAT
CAACAGGATGTCGATGGAGATGGGATCGGTGATGCTATGGAAGGAAATGG
TTCTACTTGTACAGACATTAATGAGTGTTTAGAGAACCCTTGCTCTCCAT
TGACCAAATGTGAAAACAGGCTTCCTGGCTATGTATGTCACCAATGTCCA
TCAGGCTATAAAGGTGAACAACTTGTTGGCATTGGGAGAGAACATGCAAG
ATTGAAGAAACAGGTTTGCATAGATATTGATGAATGTTTGGTTGGAACAC
ACAAGTGTGATGACAACGCTATCTGCATCAACAAAAAGGGATCATATGAG
TGTGGGCCATGTAGATCTGGATATCGGAAAGGTATTGATAGCAATTGTGT
ACATTTGGAGATTTGCAGAGGACGGCCAGGATCACCAAGTAACCCATGCT
CAAAATACGCCACTTGTCATCCCATTTCTGGAGGAGCTCTCTGCAAGTGT
CGACCATCAATGGCTGGAGATGGATATCATTGCGGTAAAGATACTGACGG
AGATGGGATCCCTGACCAACAACTCCAATGTGATTCAAAGCATTGTCAAA
AGGATAATTGCATGAACACACCGAACAGTGGGCAATCAGACCTGGATGAC
GACGGTAAAGGTGATGCGTGTGACACTGATCTAGATGGCGATGGTATTTA
TAATCAAGTGGACAATTGTCCACGTCATTCGAATCATGATCAATCGAATA
GTGATAATGACAAAATAGGGGACGCCTGTGATAATTGTTTGTTTACAAAG
AATGACCATCAACAGGATGTCGATGGAGATGGGATCGGTGATGCTATGGA
AGGAAATGGTTCTACTTGTACAGACATTAATGAGTGTTTAGAGAACCCTT
GCTCTCCATTGACCAAATGTGAAAACAGGCTTCCTGGCTATGTATGTCAC
CAATGTCCATCAGGCTATAAAGGTGAACAACTTGTTGGCATTGGGAGAGA
ACATGCAAGATTGAAGAAACAGGTTTGCATAGATATTGATGAATGTTTGG
TTGGAACACACAAGTGTGATGACAACGCTATCTGCATCAACAAAAAGGGA
TCATATGAGTGTGGGCCATGTAGATCTGGATATCGGAAAGGTATTGATAG
CAATTGTGTACATTTGGAGATTTGCAGAGGACGGCCAGGATCACCAAGTA
ACCCATGCTCAAAATACGCCACTTGTCATCCCATTTCTGGAGGAGCTCTC
TGCAAGTGTCGACCATCAATGGCTGGAGATGGATATCATTGCGGTAAAGA
TACTGACGGAGATGGGATCCCTGACCAACAACTCCAATGTGATTCAAAGC
ATTGTCAAAAGGATAATTGCATGAACACACCGAACAGTGGGCAATCAGAC
CTGGATGACGACGGTAAAGGTGATGCGTGTGACACTGATCTAGATGGCGA
TGGTATTTATAATCAAGTGGACAATTGTCCACGTCATTCGAATCATGATC
AATCGAATAGTGATAATGACAAAATAGGGGACGCCTGTGATAATTGTTTG
TTTACAAAGAATGACCATCAACAGGATGTCGATGGAGATGGGATCGGTGA
TGCTATGGAAGGAAATGGTTCTACTTGTACAGACATTAATGAGTGTTTAG
AGAACCCTTGCTCTCCATTGACCAAATGTGAAAACAGGCTTCCTGGCTAT
GTATGTCACCAATGTCCATCAGGCTATAAAGGTGAACAACTTGTTGGCAT
TGGGAGAGAACATGCAAGATTGAAGAAACAGGTTTGCATAGATATTGATG
AATGTTTGGTTGGAACACACAAGTGTGATGACAACGCTATCTGCATCAAC
AAAAAGGGATCATATGAGTGTGGGCCATGTAGATCTGGATATCGGAAAGG
TATTGATAGCAATTGTGTACATTTGGAGATTTGCAGAGGACGGCCAGGAT
CACCAAGTAACCCATGCTCAAAATACGCCACTTGTCATCCCATTTCTGGA
GGAGCTCTCTGCAAGTGTCGACCATCAATGGCTGGAGATGGATATCATTG
CGGTAAAGATACTGACGGAGATGGGATCCCTGACCAACAACTCCAATGTG
ATTCAAAGCATTGTCAAAAGGATAATTGCATGAACACACCGAACAGTGGG
CAATCAGACCTGGATGACGACGGTAAAGGTGATGCGTGTGACACTGATCT
AGATGGCGATGGTATTTATAATCAAGTGGACAATTGTCCACGTCATTCGA
ATCATGATCAATCGAATAGTGATAATGACAAAATAGGGGACGCCTGTGAT
AATTGTTTGTTTACAAAGAATGACCATCAACAGGATGTCGATGGAGATGG
GATCGGTGATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010854XLOC_010854Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019320-proteinTCONS_00019320-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019320-exon-sc0000325-1491911889:272331..272585TCONS_00019320-exon-sc0000325-1491911889:272331..272585Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1510915933:272331..272585TCONS_00019320-exon-sc0000325-1510915933:272331..272585Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1575043694:272331..272585TCONS_00019320-exon-sc0000325-1575043694:272331..272585Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1491911889:273297..273434TCONS_00019320-exon-sc0000325-1491911889:273297..273434Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1510915933:273297..273434TCONS_00019320-exon-sc0000325-1510915933:273297..273434Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1575043694:273297..273434TCONS_00019320-exon-sc0000325-1575043694:273297..273434Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1491911889:273972..274046TCONS_00019320-exon-sc0000325-1491911889:273972..274046Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1510915933:273972..274046TCONS_00019320-exon-sc0000325-1510915933:273972..274046Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1575043694:273972..274046TCONS_00019320-exon-sc0000325-1575043694:273972..274046Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1491911889:274626..274784TCONS_00019320-exon-sc0000325-1491911889:274626..274784Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1510915933:274626..274784TCONS_00019320-exon-sc0000325-1510915933:274626..274784Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1575043694:274626..274784TCONS_00019320-exon-sc0000325-1575043694:274626..274784Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1491911889:275214..275318TCONS_00019320-exon-sc0000325-1491911889:275214..275318Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1510915933:275214..275318TCONS_00019320-exon-sc0000325-1510915933:275214..275318Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1575043694:275214..275318TCONS_00019320-exon-sc0000325-1575043694:275214..275318Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1491911889:276097..276204TCONS_00019320-exon-sc0000325-1491911889:276097..276204Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1510915933:276097..276204TCONS_00019320-exon-sc0000325-1510915933:276097..276204Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1575043694:276097..276204TCONS_00019320-exon-sc0000325-1575043694:276097..276204Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1491911889:277055..277191TCONS_00019320-exon-sc0000325-1491911889:277055..277191Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1510915933:277055..277191TCONS_00019320-exon-sc0000325-1510915933:277055..277191Clytia hemisphaericaexon
TCONS_00019320-exon-sc0000325-1575043694:277055..277191TCONS_00019320-exon-sc0000325-1575043694:277055..277191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:272331..277191 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.046195	0.135142	0	0	0	0.0552533	0	0	0	0.416111	0.518988	0	0.256453	0.297848	0.0332233	0	8.6383	10.9677	0	0	14.2905	13.626	4.0299	6.12758	10.4076	9.00505	1.39353	0.528343	0.974184	0.715219
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR000742EGF-like_dom
IPR028974TSP_type-3_rpt
IPR003367Thrombospondin_3-like_rpt
IPR018097EGF_Ca-bd_CS
IPR017897Thrombospondin_3_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00019320 vs. Swiss-Prot (Human)
Match: COMP (Cartilage oligomeric matrix protein OS=Homo sapiens GN=COMP PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 3.056e-63
Identity = 131/259 (50.58%), Postives = 160/259 (61.78%), Query Frame = 1 
Query:  196 CGRCPIGMEGNGSTCTDINECLENPCSPLTKCENRLPGYVCHQCPSGYKGEQLVGIGREHARLKKQVCIDIDECLVGTHKCDDNAICINKKGSYECGPCRSGYRKGIDSNCVHLEICRGRPGSPSNPCSKYATC-HPISGGALCKCRPSMAGDGYHCGKDTDGDGIPDQQLQCDSKHCQKDNCMNTPNSGQSXXXXXXXXXXXXXXXXGDGIYNQVDNCPRHSNHDQSNSDNDKIGDACDNCLFTKNDHQQDVDGDGIG 969
            CG CP G  GNGS CTD+NEC  +PC P  +C N  PG+ C  CP GY G    G+G   A+  KQVC DI+EC  G H C  N++CIN +GS++CGPC+ G+     S C          GSPS  C ++A C     G   C C    AG+G  CG+DTD DG PD++L+C  + C+KDNC+  PNSGQ D+D DG GDACD D DGDG+ N+ DNCP   N DQ N+D DK GDACDNC   KND Q+D D DG G
Sbjct:  111 CGPCPAGFTGNGSHCTDVNECNAHPCFPRVRCINTSPGFRCEACPPGYSGPTHQGVGLAFAKANKQVCTDINECETGQHNCVPNSVCINTRGSFQCGPCQPGFVGDQASGCQRRAQRFCPDGSPSE-CHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLDGFPDEKLRCPERQCRKDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTDEDKWGDACDNCRSQKNDDQKDTDQDGRG 368
The following BLAST results are available for this feature:
BLAST of TCONS_00019320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COMP3.056e-6350.58Cartilage oligomeric matrix protein OS=Homo sapien... [more]
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