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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019322 ID=TCONS_00019322|Name=TCONS_00019322|organism=Clytia hemisphaerica|type=transcript|length=654bp
ttaaaatgCCATAACTTTAGTTTCGCTTGTGCTACAGACTTGTATGAGCT
ctcatttttcagcattttttattgtgcatcctctgaattaaaatcattca
atgACAATCTCCACTTTATGCACAATATCCTTTTGAAATCAAGGTGGTCT
CTGgttccctttaaaataattttgccctaattcaatgtttaaaatgattg
atatttttatttacaGCATATCCACTCAACAACAGGACCAAGTTTCGATT
TAAGAGCTGCAATCTGGCACACAGGCAATTTCACTTCGCAGTCCACACTA
CTATGGCGAGATGAGAAAAACcgtggttggcaagataaaacgTCTTATTT
TTGGCAGCTTTTACATCGACCAATGTATGGCTTAATAAGGTTGAAAGTGT
ACAAAGATTTAGAGTTGATGGTGGACACGGGTTTCTTACAAAATGAAACA
TTGAAAGGTGGAAAGTTCGGACCATACGCATTCAGTCAAGCACGTATGAT
CTGGTCAAATATGAAGATCGAATGTAATGATGACCTTCCACCTGAAATCA
AGATGcaaatgaatttgaaaaagaaacgaAGTGCTTGAGATTGTTGATGA
AAGAATAAACTTGAGATCGACCGATTTCTTTGTTTGGGACGAACAATTTA
AAGA Run BLAST on NCBI transcript from alignment at sc0000325:288045..291978+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019322 ID=TCONS_00019322|Name=TCONS_00019322|organism=Clytia hemisphaerica|type=transcript|length=3934bp|location=Sequence derived from alignment at sc0000325:288045..291978+ (Clytia hemisphaerica)
ttaaaatgCCATAACTTTAGTTTCGCTTGTGCTACAGACTTGTATGAGCT
ctcatttttcagcattttttattgtgcatcctctgaattaaaatcattca
atgACAATCTCCACTTTATGCACAATATCCTTTTGAAATCAAGGTGGTCT
CTGgttccctttaaaataattttgccctaattcaatgtttaaaatgattg
atatttttatttacaGCATATCCACTCAACAACAGGACCAAGTTTCGATT
TAAGAGCTGCAATCTGGCACACAGGCAATTTCACTTCGCAGGTCAGTCAG
GTTTAATCATGTTGACATTATGTAATCTTTTTATTTAAGAGCAAATTATA
TTTGAACGAAAGGCTTCGAGGCGAAAACAATTAAGAatattctaagaaca
ttctattctaagaacattctgcTTCTAAGAAAAGTACCGTAATATAGTCT
CAgaatgtgaaaataagaacattttaagaacatttaggcttaaccccccc
ccccaaaaaaaaaaaaaaaagtaaaaaaatatgtaaaaaaaaaaacattt
taagaacatttaggcttaacccccccccccaaaaaaaaaaatgaacacct
caacgtttcaaaaatttcaatgttctattaaaaagaaacatgtagataAA
CGCATATAAGAACATGTAATTCTTGACACAGACTGGGCTGTTCttattaa
tttaaaaatttcaagtttatatggccatttctgaaatctggggctcagat
tgttcttaatttgttctcaggttttggccaattttcagcctcatgttctc
ataaaattgtATACCTTATTTTCCCAAATGAATTTTTGCTCAGTGAagct
attatacattatactgtaattttccttttatttttacatacagTCCACAC
TACTATGGCGAGATGAGAAAAACcgtggttggcaagataaaacgTCTTAT
TTTTGGCAGCTTTTACATCGACCAATGTATGGCTTAATAAGGTTAGTATA
ATCATTGCAAAAGCTACTATTCTGGCATATCTTTCtctaagaaaatgttt
ttttggtgaaatggctaaaTATGAAAAGTAAGTAAATAAGTTTGCGACCT
CAATCGAGGGTGCCCCGAGGGCGCCGACCAGGCCCACTCCTATCGCTGGA
TTTCTTCACTTActcttgatccgtctctttaaaTTGACTGGGGACCAAAC
TCATAACCCTGTTGAAAATCGCGTGTAAGTGCACTTAACACTCTTTTACT
TTCTAGTGAGCACATCCACTAAGCGCAGTTAAACACACTTTGGCGCACTT
ATGCGCGCATAAACGCAAAAACGCCTTAATTTTACAAGGCGCAATTAGAC
GCACTGAAACATACGTAAAAATCTTGATATTCCGACGCGATCATCAAATA
ATAGGCCTAAAATTCAAACTTTGACGTAActtttttcagttagaatagaa
acttgaaattttacatgcGTCTTAAACAACCTATTTCAAAGCTTTCctga
aagtttcatttttatagCTTTAGTGGTTTTAAAGATATGGAGATTTTCCT
AAAGGATGTGAAAATGTGCTTGTTTATAGATTTGACGTCAGTTTCTTTTC
TGAAGATAAATTCACGTTTTACAAAGCAGTACTTTTGATGATAAAACTAA
AGACAAAAAATGTAATGAGTAAATCCGCGATTTGAGTTCACGAATAATGC
ATCTTAATTGAGGAACCATTACATTCACCAACAGTGCGAACACGACCAAC
AAATTGCTTcatagattttctgatttcagGTAGGTTTCTCGCGCATTCCT
TCCAAACAGACTTGATCTTAGAAATGATTTCCTCCTCTGTTTCAAAAGGC
TTCTTCAATCTTCCTCAGTACACCTTGCGTTTAACTTCGTTCCAAAAGTA
GTAATATAAAGGATTACTGTCGGGACTCTTCGGAGGCCACTGATCTTTCT
TAAAGTATCGTCTCGGTATGGTTTCCTGCAAAAAGTCTTGGACAATGTTG
CTGGTGTGCGATGAAGCTCAAATCCATATCTTTGAAACTACTAAAGCTAT
AAGAATGAAACTTTCAGGAAAGCTTCGAAATAGGTTGCTAAAGACgcatg
taaaatttcaagtttctattctaactgaaaaaaagttacgtcaaagtttc
aattttaggccTATTTTTTTTGGCACACCCGGTACACCTCGTGTAAACAC
TTTTCACTTCTTTTTGAAGAGAGAGGGGGATTTTTCTATTGCGTATAAGT
GTGCCTCTCACTCCTTTTCCCCTCTGTTCCATCAAATCACTTTGTAGTGC
CAGTTAGTGTGCCCGGCAGATAAATGTACTTAAACGCGATTAGGTGCATT
GCTTCACACCTGTTCAAGATCTCATTTTTTTTACATCTAACTATGCACCA
AAATCTATTTAGGTTGAAAGTGTACAAAGATTTAGAGTTGATGGTGGACA
CGGGTTTCTTACAAAATGAAACATTGAAAGGTGGAAAGTTCGGACCATAC
GCATTCAGTCAAGCACGTATGATCTGGTCAAATATGAAGATCGAATGTAA
TGGTAAGTAATTTATTTTGTTACTGTACATTAAGGAGCAATGGTAGAGTT
GGCCAAGTCGTCAGCAcaattgatttcaaagccccgaaggggctagatct
GAAACACCCGGATGGGAAATGGAGCCAATAATTTCCCATCCAGATACGCG
ACccgtttttcgaaaaaattgcgTAATTCGGACAACaaagctacaatcat
ggtcgtagtatttgagaaaaaaggaaaattcctacgaaatcttataacca
caaacgaatcagaagcgctctaaattaggttggaagaagggtagagtttt
aactctgagttttaggatctaaaagttcaagaatagtTCGATAGGGCTCA
GAATGTAGCCttgaagtctataaacccctcccgaattaaAATAcccgaat
aaatttatcaattagctcAAAAGCgacattctcgcccgaactccaaattt
cgaaaaacgaggaaataagctatgttctcaatagattttgaccatgattg
tactttCAAAACGCCATGGTAGTTACAGTCAACtttttctaattcgaact
tctgttATTCAAACTTAAACATTGCTCCTCTGGCCTGAAAAGTCGTCTCC
TTAATCAGAATCCTTATCTTTGATTCGAAGaaaccttgaaaatcgaatat
aAGAGAGAGCCAACTGTATTTACCTCTTTGAATCTTCCCAATCTGGTAAA
TTCGAAACCAGCCTTATTGAGAATGAGTATATACTAACCTTAATAAGACA
ATCTTTCTACTGCTGGTTTTCtgttaatacaccttttcgaccgtagccgc
taattgccgcgcgggcaatttttaccaccctaaaaccgtcctagtctttt
tttcgcgcctGAAGACAATaggaaaaagtgtaaaaaaaggattggaccga
gtttagggtggtaaaaaatgcctgcgcggcaattggcggctacggtcgaa
aaggtgtatagccTATTTCATAGAATTCGTGTTTTTAAACGTGATATTTT
TCTACGTCATTTCAGTAATCAAGTTTTTATTGTTGAACACTCTTTTGCGA
ATTGAGATAACAAAGGCAATAACAAAgagttcttgaattcccaagcGAAT
TGAATGATAACAAAATTCAATTGTTTTCAACGTCTTTCTCAAAGGGAAAT
CTGCATAGACTTGCGCATTTTCCCCCTTTAAATTGATAGAAAATAGCATG
TAACAAATACGCGAATCTTATGAAATAGGCTTATGTTTACCAACTTCTTT
ATCCCATAGATGACCTTCCACCTGAAATCAAGATGcaaatgaatttgaaa
aagaaacgaAGTGCTTGAGATTGTTGATGAAAGAATAAACTTGAGATCGA
CCGATTTCTTTGTTTGGGACGAACAATTTAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019322-exon-sc0000325-1491911889:288045..288335 | TCONS_00019322-exon-sc0000325-1491911889:288045..288335 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1510915933:288045..288335 | TCONS_00019322-exon-sc0000325-1510915933:288045..288335 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1575043694:288045..288335 | TCONS_00019322-exon-sc0000325-1575043694:288045..288335 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1491911889:288938..289035 | TCONS_00019322-exon-sc0000325-1491911889:288938..289035 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1510915933:288938..289035 | TCONS_00019322-exon-sc0000325-1510915933:288938..289035 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1575043694:288938..289035 | TCONS_00019322-exon-sc0000325-1575043694:288938..289035 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1491911889:290457..290596 | TCONS_00019322-exon-sc0000325-1491911889:290457..290596 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1510915933:290457..290596 | TCONS_00019322-exon-sc0000325-1510915933:290457..290596 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1575043694:290457..290596 | TCONS_00019322-exon-sc0000325-1575043694:290457..290596 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1491911889:291854..291978 | TCONS_00019322-exon-sc0000325-1491911889:291854..291978 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1510915933:291854..291978 | TCONS_00019322-exon-sc0000325-1510915933:291854..291978 | Clytia hemisphaerica | exon |
| TCONS_00019322-exon-sc0000325-1575043694:291854..291978 | TCONS_00019322-exon-sc0000325-1575043694:291854..291978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:288045..291978 + |
Blast
BLAST of TCONS_00019322 vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.784e-34 Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 1
Query: 136 KSRWSLVPFKIIL-P*FNV*ND*YFYLQHIHSTTGPSFDLRAAIWHTGNFTSQSTLLWRDEKNRGWQDKTSYFWQLLHRPMYGLIRLKVYKDLELMVDTGFLQNETLKGGKFGPYAFSQARMIWSNMKIECNDDLPPEIK 552
++ W PF+ + P L+ + S +GP LR A+WHTG+ Q LLW D +N GW+DKTSY WQLLHRP G IR+K+Y+ +L+ D+G + + +++GG+ G + FSQ +IWSN++ CND +P + +
Sbjct: 814 QTYWQATPFRAVAQPGLQ--------LKAVTSVSGPGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWQLLHRPQVGYIRVKLYEGPQLVADSGVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCNDTVPEDFE 945
The following BLAST results are available for this feature:
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