TCONS_00019324 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019324
Unique Name	TCONS_00019324
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	297

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000325:329680..334345+

transcript sequence

>TCONS_00019324 ID=TCONS_00019324|Name=TCONS_00019324|organism=Clytia hemisphaerica|type=transcript|length=297bp
GTGGAGAAAGAAAACAGTTGATGTATTAAGGAACATTTAAACAAGCAggA
TTATTCGAACGATGAGAAAGTCGTAAAGATTTCCTACTGTAATTTTACAT
TTGCTTAATAAAGACTTATGGGACATTACTTTTTGTGCAAAGCAGCAAAA
TTGTATTCAAATGACCTGGAATGTCATGATGCTTTAGATTGGAGGAAATC
AACAGCATTGGATGAATCACTAATGATAACGAATAAAAGGACATTGCGGA
GAGGACAACAAACAAGCGAAGATAGTTTTTGTAGAAATAAATTTGAT

Run BLAST on NCBI

transcript from alignment at sc0000325:329680..334345+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019324 ID=TCONS_00019324|Name=TCONS_00019324|organism=Clytia hemisphaerica|type=transcript|length=4666bp|location=Sequence derived from alignment at sc0000325:329680..334345+ (Clytia hemisphaerica)
GTGGAGAAAGAAAACAGTTGATGTATTAAGGAACATTTAAACAAGCAGTA
AGTAAAACTTCTATATTAATctttaaaaagtcttgaaaaatttACATTCC
TTTCTAGCTAAAATTGAGCCAATCTTTAAGTCACAACAGACAGGGATTTC
AGAATTCGCTCTTAGAGCATTTCACAGAATATTAGTACAGTTTGGAGCGT
TGTTTTTTAGTTTGGTATATTCATTTATGCCAACATTTTCATGCTGATTT
CTTAgacatttctgaaatctgaggccgagtttgttttttaattatttcta
aGGTTTTGGCTCAAATCAAACCTCACGTTCTAATAAAATTNNNNNNNNNN
NTTGGTATATTCATTTATGCCAACATTTTCATGCTGATTTCTTAgacatt
tctgaaatctgaggccgagtttgttttttaattatttctaaGGTTTTGGC
TCAAATCAAACCTCACGTTGTAATAAAATTGCTCGGTTAAACAGATTTTA
TTCAGTCGAGTACTGAGCGATCTTTTCAAGTCATCtctatacaaaaaaga
aaagcaaaaagaccTATCGAATGAGAACATCATAATGTTCCACCGCAGAG
TAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGATATCCAAAA
ACTCGAGAACACGCAAGCAAATTGATTTTGCAACGGTataaattgaaact
tgaaaatgttattaacaCTTAGTTAATTGGCATAATTAGTGAGGTTAGAt
ataatttgatcatttttccgATTTTATTTTTAGGGCCTGTCTTCTTTGGA
ATCAAGATGGAGCAAGAAACgaagactttttataagaacaaaaaaactca
tcaagcatttgctttgcgttttttttttaccaaagctgTGAAGATCACAT
GTCAGAAGGATAAGCGAGCAATAGAAAAACATAATAATCTGCACAACACT
CTTGTATCACAAGATCACCCGGTGGGGACCTACAGCGAGAAATTCCTATT
GCAAAATATCTTaacggggaagaaaatttggggtTTTAAATGGTCGGGGA
AAAATTGCGACGGCGTGTACTTTTGTTAACTCTTCAAAGTTCTATCGGCT
ATCTGAGCCCATCAGAATGACTTTATTACTCAATATGGAGTTTTTCTCTC
CCCAATTCATAAACGGATGATATACATTGTCCCGGGACATTTACTAACAC
GCATAGACGtacattttctatatttcatatataatagAACACCCATTTCC
CAGTGAcccagtgaagttttgaaacccacCGGGTCTTAATATAGGATCTC
CAAAGCTCACTAAGTGATAACCTTTAACTTCCTCTGGTAGGGAAAAATTG
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNagcctttgatctttcttttttttcttttgttta
gcgtggcgctaaatgatgtgattactcatttttttgtcgtttaaaaTATG
ACAGTGTGCTCGACtgttatttcaaattttaatatacCCTTTTCTATCTT
TGGATAAGTTGAATTTCTAAGTTACTTAAATgtcttgaaaatagaaaata
tattGATTAGGTGAGCTTTCAACttgtattcatttttttcttctttaggg
ATTATTCGAACGATGAGAAAGTCGTAAAGATTTCCTACTGTAATTTTACA
TTTGCTTAATAAAGACTTATGGGACATTACTTTTTGTGCAAAGCAGCAAA
ATTGTATTCAAATGACCTGGAATGTCATGATGGTATGCACTTTGATTTTA
TGATTCATATTTCACCTTCACATTTGCTGCATAAGGGACCGGTGTAGGAC
ATTGCTAGCTATTCGAATTTGCaaataatacacccctgtctcacagcccc
ggtgggacttttttcctcagtgggaatAAAATTTCCTGTCGAAATTCaag
tgggaataaaaattttattgtttgaagttccaaggttaaaaaatccattc
ggggtggttttggagtgcagtttTTAAACACTGATTTTcggatggggatg
aaatcatagtcaatttctcagtggggctgaaattcccggTAGTTTttcta
ccggggacgaaatttttgccaaatattccagtggggctgggatAATTAAA
CCTTATAAATTTTGAGTTTATTTTAATAATATTGCTAGTAATCTTTGTTG
TGATAGGATTGCACAACATAAAGCACTTTCTGTAAAAGCAATTTTATATG
CTAACGatttcaataaatattttttaacattttttttttctaaatcatAG
CTTTAGATTGGAGGAAATCAACAGCATTGGATGAATCACTAATGATAACG
AATAAAAGGACATTGCGGAGAGGACAACAAACAAGCGAAGATAGTTTTTG
TAGAAATAAATTTGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010857	XLOC_010857	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019324-exon-sc0000325-1491911889:329680..329726	TCONS_00019324-exon-sc0000325-1491911889:329680..329726	Clytia hemisphaerica	exon
TCONS_00019324-exon-sc0000325-1510915933:329680..329726	TCONS_00019324-exon-sc0000325-1510915933:329680..329726	Clytia hemisphaerica	exon
TCONS_00019324-exon-sc0000325-1575043694:329680..329726	TCONS_00019324-exon-sc0000325-1575043694:329680..329726	Clytia hemisphaerica	exon
TCONS_00019324-exon-sc0000325-1491911889:333578..333711	TCONS_00019324-exon-sc0000325-1491911889:333578..333711	Clytia hemisphaerica	exon
TCONS_00019324-exon-sc0000325-1510915933:333578..333711	TCONS_00019324-exon-sc0000325-1510915933:333578..333711	Clytia hemisphaerica	exon
TCONS_00019324-exon-sc0000325-1575043694:333578..333711	TCONS_00019324-exon-sc0000325-1575043694:333578..333711	Clytia hemisphaerica	exon
TCONS_00019324-exon-sc0000325-1491911889:334230..334345	TCONS_00019324-exon-sc0000325-1491911889:334230..334345	Clytia hemisphaerica	exon
TCONS_00019324-exon-sc0000325-1510915933:334230..334345	TCONS_00019324-exon-sc0000325-1510915933:334230..334345	Clytia hemisphaerica	exon
TCONS_00019324-exon-sc0000325-1575043694:334230..334345	TCONS_00019324-exon-sc0000325-1575043694:334230..334345	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000325	supercontig	sc0000325:329680..334345 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60951	3.13905	3.18914	1.36364	12.4804	7.28946	8.79443	13.0763	2.03445	2.1	0.407662	1.17264	0	0	0	0	0	0	0	0.447595	0	0	2.63119	3.02474	0	0.385563	0	0.588831	0.991443	2.27511

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00019324 vs. Swiss-Prot (Human)

BLAST of TCONS_00019324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00019324 (transcript) - C. hemisphaerica