TCONS_00019325 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019325
Unique Name	TCONS_00019325
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1732

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000325:9754..16489-

transcript sequence

>TCONS_00019325 ID=TCONS_00019325|Name=TCONS_00019325|organism=Clytia hemisphaerica|type=transcript|length=1732bp
CTATCTCGACATTTAAAGACCCTTTCGATTCATCGTCTTCACCGAAAAAT
TCAACAGTATCTCCATCGAACCTCTCAACATCCAAAGGGAAACcatcaac
aaaaaacaaacaccaCAAACATAGAAAGCCAAAGAAAGATACAAAACCTG
AACATCTCTACGAAGGAGTTGATGCAGATACCATCCCCTTATTGGCTGGT
AGAAGAGCGCGCTCTAATACAAGTGCTGGAAGCTCTTATGGATCTTCAAG
ATTGTCTTTCCTAGCTAGGGAGTCAGGGAGCATCAATAATTTACGTGGAG
ATGGCACCGAGTTTCACGAAGAATCATTGAATAAATCCGACTTCTGCGCC
TCATTATTCCTTCCATCACTTAGTTTCCAGTCCTCTCTACCACGTGGTCG
ACATATATTTGATGATACACGTGGCTCTTCGAATTCAGTCATGGAATCGT
TCGTGGAGAAATTGTATCCGGACCGTCGAGGAACCATCATGTTAGCCACG
TGGAATTTGTTACCATTATTAGCCGGAAGTGCTGTTTTCACCATGCCGTT
TGCAGTCGTGATTGGAGGATATTTCTCgcttgttttcatgctggttaTGA
GTTTGATGGCTGATGTAACTGGGGTCTTATTAATTGATTGTTTATATGAA
ATCTCGCCCAATAGTGGAACAAGAAAACGTGTTCGAAAAGATTTTGCTGA
CATTGGAAGATCAGTGTGGGGGAGAACAGGTGCTTTTATTGTGCACTCCT
TCTTGGTAGTTTATCTCTTCTTAGGTGATGTCCTTAATATGTTGTTATTG
TCTAAAAGTGTATATTCACTGCTTCACACATGTACCAAGTTATCATTCGT
TGCTTTATCGTGTTTATTTTCGATCTTGGCTTACCCGACCTTATTCATCA
AACGACTGACTATTCTCGCTTACATCAGCTTACTTTCAATCATTACAATT
TTATTCAGTATCGTTGCCTTAATCTTTGTTTTCATCCATGAACGCGATTC
CTGGTCACATAACTATAAAGATATTCCGTTCCTGAATATAGAGCGTTTCC
CTCTTGCAGCAGGTATCATAATGTTTTCATGTATCTCGCACTGTGTTCTA
CCGCAAGTTGAAGGGAACCTTATGGACGCTTCAAATTcatcaaaagttat
tcataTATCATATATAACATCAGTTTTAATCAATATTCTTATTGGTATAT
TTGGTGCACTCACCTTTGGCTTGAAGACTGAGAGTTTGGTAACTCTAAAT
GCAAGCCGTATTAATGAGATTATCAGAACAATTATTGGAGTATCATCGAT
AGGTTATTCTGTACTTAACTATCCACTGAATATGTTTATTATTTGCGAAA
CTGTCGATAAAATCATCCACGATACAAAAGTTGAGCAAAACAAGAAATAT
TATTATGCCTGGGTGGCTTTGACGAGACTTGTTTTATTTGCATCGACTGT
CGGTTTAGCACTTCTTATCCCATATTTTGGAATTCTTCTTTCGCTACGAG
GCTGTCTCATTGGCACGTGCCTAGTTTTCGTATTTCCGTGTTACTTTCac
ttgaaactaaaatggcagcTGCTGTCATGGTTTCAAAAAACAGTGgagat
atctttattggttatTGGAGTGGTGCTTGGATTGTGTGCTTTATATGGGA
CAATAACGAGTCTCGTCTACGCTTTTGAGACTGGCGTTGAATTGTAATTA
TAgcatttctttattttgtatgtaaagcaaaa

Run BLAST on NCBI

transcript from alignment at sc0000325:9754..16489-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019325 ID=TCONS_00019325|Name=TCONS_00019325|organism=Clytia hemisphaerica|type=transcript|length=6736bp|location=Sequence derived from alignment at sc0000325:9754..16489- (Clytia hemisphaerica)
CTATCTCGACATTTAAAGGTACTTTTTATATTTCAATATACATAATTTGC
TACGGTTAGTTTTCTTTTTATGATCACCATCCTAGAATCTAGGTCTTAAG
GGACCTAAGTCGAGAACTCAAAAAAACCCTCCCACCACGGCTCTCGATCA
GCCATTGAAGTACCAAGTTCCTCAATCTCTAGCCCTGTTTCCTGTTTCAA
AACATCAATAAATGTGCTATACTTACTTACTCTGACGCTTTGGGCCAGTA
GGACACCAAAGTAAGATTTCTCTTCTGTGCAACCAAAGGTGCAACAAGTT
CATACCACTACTCGGCCCTGACGCAGATCGGGACCACTCTTTTTATCGTT
TTATTCCTTAAATTGGGGACCAATGAACATAATCGAAAGATTAAGCTTAG
AAATTACCGTCAATCAAGACAAGACAAGACATACACCTTCCCAAAAATGG
GAATAGGCCCTAACCTAAGTCAGAGATCACTGCACAATATATTACATAAA
CAATAATGAAAATAAATAACTAAAGAATAAATGACTGCTATTAAAATAAA
AATCTACGAAATATTGTTAATCAACTTCCACCATCTCAGTCTATCAGAGG
CAATCACATACCAATTACATTTATCAATACCAGCTTTTTTCAAACATTTA
GAAATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNCGCCGAAACTAAGCTCTTCAAAGTTGAA
ATACTCTTCCTCGCAAAAGTCTTCATTTTCTTCTTCATCAAATTTTTTCA
ATGCAATTTTTGAATTTTCATATTCAGGGATAGTTTGTCTAACAGAAAAT
GTATAACATGCCATAGTTTTGTTGGTTACATCAGTCAGAAAACACATTTT
AAACACGGCAATTATGAAAAATTCACTATGGTCAGAGCCCTTAATACAAT
GCCGACTCCTTGCGAGCCACGATTACACGCATCGTTTGTTTTTTCAAGTC
CGTTTGTTATTAGTTTGAACTTGTCACAGTCAAGAGTCTCATGTCTGAAT
CTCCATGTTTCCTGAAGACACATACCCCAAACATTTTTACGTAATGATAG
CGAGTTGTACAACTCTTCGAGTCTCGAGGCAGATTTGATTCCACGTACAT
TCTGCGAAATGAAGCAGATGTTCTTCATAAGCTTTTTAGCAACCATGCTT
GTGAGGCTATGGGGTGCTACGAGTGTTGATTGCCAGATCCCACCGTATCC
GGTAATCCAATTGGATTCGCGAGGAGTACAGCCTCTTGGATTGACCACTC
AGCTTGAATGTCGATTGTCTTCACTTCATTCGTTGTTGCGTGTATAGGTG
TGGTGGCTCACCCCCATTTAATTGAGGAGGATTTTCTTTCCACCACCACA
CCCTTTTGTTGTTTTTTGATCTTTTTGATCTTTTTGATCTTTTTGATCTT
ACCGTCAATCTCTTTTCATAATTTCTTCTTCTTACCTAACTCCTGAGGGC
AATCGATTTTAAAACGACCGTGTGTGTGGCCAAAATCTAGGACTATAAAC
CAGGCCCTTACAATGCAGAGAAGATTAAGCTAAATCTTATTAAAGTTTGG
CGAAAAATTGACCCTTACGGTGTACTTTCTTGAAAGTTTTTGTCTATTTC
ATGGCAAAATAGTCAGGTTTTCCAAAAAACTCCGTTTTTCTCACTTTTTA
CACCCTAAAGTGCATTTCTGTTATTACGACCCTTAAAATGCACCTTTAGA
AGCCTGAAAAGGCACTCCCCTAGGTACCTGGCTTTAGAGTTTAAATCAAA
GCAGTCTGTTCAGTTTCTTCTCATGGTATGTAAGGGTTTAGTCCCGGAAA
AAGTCTTACCGAGAGTTTGAATAGCAGTACTTCTTTTATTCCTCATCAGT
TAAAATCAATTAAGATATTAAGCCCTCCAATATCTCGAAACGGTCCTACC
AATAGGGGAAGAGGAATCACTGAGCAGACAACCATTGCAACTCTTGAGAT
ACGACCGTCGACTAATTTAGAAAGATTGATTATAAGTGGAGAAATCTAGT
TACAAAGATCTCCAAGCCTTTTTCTCTGAGAGTTTTCAAGATTCTTTTTC
ATACTTTTACTACCTAAATTTGCAGTCTTCAGAATAAAGTATTTCAACCG
TCACAAACCTTATATTCCAATTTTTCAGACCCTTTCGATTCATCGTCTTC
ACCGAAAAATTCAACAGTATCTCCATCGAACCTCTCAACATCCAAAGGGA
AACCATCAACAAAAAACAAACACCACAAACATAGAAAGCCAAAGAAAGAT
ACAAAACCTGAACATCTCTACGAAGGAGTTGATGCAGATACCATCCCCTT
ATTGGCTGGTAGAAGAGCGCGCTCTAATACAAGTGCTGGAAGCTCTTATG
GATCTTCAAGATTGTCTTTCCTAGCTAGGGAGTCAGGTATGAATAACTTC
AACAACAGAAAAGAGCTTATGATTTAGGCTGATATTTGGTCTATTTACCC
TTTCGAAACTTAGAACATTTATTCATAATTTCACTTTTTGAGTCTGAACC
CTTTTCTCTGAGTCGTTAGCCCTTCCTTTAGCCCAACATCAAGTTACCGC
ACATTTAAATGCCAGTATCCTAAAGGAAATGATTAAGTCTGTGACTGCAT
CCGGAGGTTACTTGAAAGATCCTCTTTCAATAGGGTCTATCAGAAGGTGG
GGGAGGGGGCGCCACTCTTTATCCCTGGATTGCTCCATTTCCTTTTGATT
ATTCTTTGTCTTTGGTAGGATCCGCTCTGACTTTTCAATTAACACTGACT
AAAGAGACTTTTTTTGATCTCGTTTTAATAGCTTTATCTGGTCTTCTTTT
TAAACACTACATTTTTCTTCTTTATTTAAGGGAGCATCAATAATTTACGT
GGAGATGGCACCGAGTTTCACGAAGAATCATTGAATAAATCCGACTTCTG
CGCCTCATTATTCCTTCCATCACTTAGTTTCCAGTCCTCTCTACCACGTG
GTCGACATATATTTGATGATACACGTGGCTCTTCGAATTCAGTCATGGAA
TCGTTCGTGGAGAAATTGTATCCGGACCGTCGAGGAACCATCATGTTAGC
CACGTGGAATTTGTTACCATTATTAGCCGGAAGTGCTGTTTTCACCATGC
CGTTTGCAGTCGTGATTGGAGGATATTTCTCGCTTGTTTTCATGCTGGTT
ATGAGTTTGATGGCTGATGTAACTGGGGTCTTATTAATTGATTGTTTATA
TGAAATCTCGCCCAATAGTGGAACAAGAAAACGTGTTCGAAAAGATTTTG
CTGACATTGGAAGATCAGTGTGGGGGAGAACAGGTGCTTTTATTGTGCAC
TCCTTCTTGGTAGTTTATCTCTTCTTAGGTGATGTCCTTAATATGTTGTT
ATTGTCTAAAAGTGTATATTCACTGCTTCACACATGTACCAAGTTATCAT
TCGTTGCTTTATCGTGTTTATTTTCGATCTTGGCTTACCCGACCTTATTC
ATCAAACGACTGACTATTCTCGCTTACATCAGCTTACTTTCAATCATTAC
AATTTTATTCAGTATCGTTGCCTTAATCTTTGTTTTCATCCATGAACGCG
ATTCCTGGTCACATAACTATAAAGATATTCCGTTCCTGAATATAGAGCGT
TTCCCTCTTGCAGCAGGTATCATAATGTTTTCATGTATCTCGCACTGTGT
TCTACCGCAAGTTGAAGGGAACCTTATGGACGCTTCAAATTCATCAAAAG
TTATTCATATATCATATATAACATCAGTTTTAATCAATATTCTTATTGGT
ATATTTGGTGCACTCACCTTTGGCTTGAAGACTGAGAGTTTGGTAACTCT
AAATGCAAGCCGTATTAATGAGATTATCAGAACAATTATTGGAGTATCAT
CGATAGGTTATTCTGTACTTAACTATCCACTGAATATGTTTATTATTTGC
GAAACTGTCGATAAAATCATCCACGATACAAAAGTTGAGCAAAACAAGAA
ATATTATTATGCCTGGGTGGCTTTGACGAGACTTGTTTTATTTGCATCGA
CTGTCGGTTTAGCACTTCTTATCCCATATTTTGGAATTCTTCTTTCGCTA
CGAGGCTGTCTCATTGGCACGTGCCTAGTTTTCGTATTTCCGTGTTACTT
TCACTTGAAACTAAAATGGCAGCTGCTGTCATGGTTTCAAAAAACAGTGG
AGATATCTTTATTGGTTATTGGAGTGGTGCTTGGATTGTGTGCTTTATAT
GGGACAATAACGAGTCTCGTCTACGCTTTTGAGACTGGCGTTGAATTGTA
ATTATAGCATTTCTTTATTTTGTATGTAAAGCAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010858	XLOC_010858	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019325-exon-sc0000325-1575043694:16472..16489	TCONS_00019325-exon-sc0000325-1575043694:16472..16489	Clytia hemisphaerica	exon
TCONS_00019325-exon-sc0000325-1575043694:11654..11911	TCONS_00019325-exon-sc0000325-1575043694:11654..11911	Clytia hemisphaerica	exon
TCONS_00019325-exon-sc0000325-1575043694:9754..11209	TCONS_00019325-exon-sc0000325-1575043694:9754..11209	Clytia hemisphaerica	exon
TCONS_00019325-exon-sc0000325-1510915933:16472..16489	TCONS_00019325-exon-sc0000325-1510915933:16472..16489	Clytia hemisphaerica	exon
TCONS_00019325-exon-sc0000325-1510915933:11654..11911	TCONS_00019325-exon-sc0000325-1510915933:11654..11911	Clytia hemisphaerica	exon
TCONS_00019325-exon-sc0000325-1510915933:9754..11209	TCONS_00019325-exon-sc0000325-1510915933:9754..11209	Clytia hemisphaerica	exon
TCONS_00019325-exon-sc0000325-1491911889:16472..16489	TCONS_00019325-exon-sc0000325-1491911889:16472..16489	Clytia hemisphaerica	exon
TCONS_00019325-exon-sc0000325-1491911889:11654..11911	TCONS_00019325-exon-sc0000325-1491911889:11654..11911	Clytia hemisphaerica	exon
TCONS_00019325-exon-sc0000325-1491911889:9754..11209	TCONS_00019325-exon-sc0000325-1491911889:9754..11209	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000325	supercontig	sc0000325:9754..16489 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0258042	0.0731907	0.107526	0.0347035	0.715582	0	0	0.0509647	0	0.50691	0.845434	0.523607	2.43924	1.77552	1.57572	0	0	2.3701	2.58544	1.5368	2.70144	0.570123	1.21069	0	0	0.0775657	0.0263424

Blast

[Close]

BLAST of TCONS_00019325 vs. Swiss-Prot (Human)
Match: VIAAT (Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 6.313e-26
Identity = 97/402 (24.13%), Postives = 191/402 (47.51%), Query Frame = 3

Query:  393 RGRHIFDDTRGSSNSVMESFVEKLYPDRRGTIMLATWNLLPLLAGSAVFTMPFAVVIGGYFSLVFMLVMSLMADVTGVLLIDCLYEISPNSGTRKRVRKDFADIGRSV----WGRTGAFIVHSFLVVYLFLGDVLNMLLLSKSVYSLLHTCTKLSFVALSCLFSILAYPTLFIKRXXXXXXXXXXXXXXXXXXXVALIFVFIHERDSWSHNYKDIPF-LNIERFPLAAGIIMFSCISHCVLPQVEGNLMDASNSSKVIHISYITSVLINILIGIFGALTFGLKTESLVTLNASRINEIIRTIIGVSSIGYSVLNYPLNMFIICETVDKIIHDTKVEQNKKYYYA----------WVALTRLVLFASTVGLALLIPYFGILLSLRGCLIGTCLVFVFPCYFHL 1553
            RG        GS + V        +   + T   A WN+   + G  V  +P+A++ GGY  L  ++  +++   TG +LI CLYE + + G   RVR  +  I  +     +   G  +V+   ++ L +  +L +++    +Y+       +S  + S + + +  P  F+K L  ++  SLL  +      + +I   +     W+  ++ + F +++++FP++ GII+FS  S   LP +EGN+   S    +++ ++I + ++  L  +   LT+  +T+ ++T N   +   IR ++ +  +  ++L+YPL  F   E ++K +     E ++ ++ A          W    R  L   T+ +A+ +P+F +L+ L G L G  L F+ P  FHL
Sbjct:   87 RGSGAPLPPSGSKDQVGGGGEFGGHDKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENED-GEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPG-LPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWA--WEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWADETKEVITDN---LPGSIRAVVNIFLVAKALLSYPLPFFAAVEVLEKSLFQ---EGSRAFFPACYSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHL 478

The following BLAST results are available for this feature:

BLAST of TCONS_00019325 vs. Swiss-Prot (Human)

BLAST of TCONS_00019325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VIAAT	6.313e-26	24.13	Vesicular inhibitory amino acid transporter OS=Hom...	[more]

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TCONS_00019325 (transcript) - C. hemisphaerica