TCONS_00019339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019339
Unique NameTCONS_00019339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019339 ID=TCONS_00019339|Name=TCONS_00019339|organism=Clytia hemisphaerica|type=transcript|length=761bp
ccaGAGAACAATCATGGCATACAGCCAACCACTATAGTGAATGAAGccgA
AGATCTACAGCCAAACAATTTACTTCTTTTCATTCCAATTCTATCCAATG
AATGGATTGTacaattacatttcaaaattctTACCGAGCATGCTGGTGGA
AGCAATTGGTGTAATATAATACATGTCACAAAGggtcaaaacaattttgt
ttaCGGAGATCGAACACCAGCCATCTTCTTTAATAaggCAACTTCGCTAC
TAAGTATAGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTA
ACAGTCCAATACAACACCGAATACAATGTGGAGATTCACCAGCGATACAA
AAGTGGAGGTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTC
ACTCAACAGATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTAC
ATTTCCGATCCTTGGCTTCCGGCATGCAATGGTTGGattaaatatatcaa
aattactaactttttataattttttatggacttttAGAATTTTATAGCTA
AAAAGGCACATTTATTCAGCGTTTTACGGTGAAAATCTCATTGTGAAACA
AGACTTAGTTTTAGCGATATGAAGCTTCAAGTACGCCAATTTGGAGATTA
AAAAAAGTTGAGATGGAAaactttcaaagcaaaaaagcTAATTAATTAAT
GTTTGATTGACAGCTCTCTTTTATgcgattttgatgaaattttttaattt
taatggtTAAA
Run BLAST on NCBI

transcript from alignment at sc0000325:200534..210438-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019339 ID=TCONS_00019339|Name=TCONS_00019339|organism=Clytia hemisphaerica|type=transcript|length=9905bp|location=Sequence derived from alignment at sc0000325:200534..210438- (Clytia hemisphaerica)
CCAGAGAACAATCATGGCATACAGCCAACCACTATAGTGAATGAAGGTAA TTATTCTTTATATCAATACGTCCTTTTTCTAACGAAGACCCTCGAAAAAC CCGGAATTTACCTACTGTCTGTTACGTAGTGAAACATAGTGGTTAAAATC CCGCTTTTTCGGGTGCTTCCGCTAGAAAACATGAAATTAACTAAGTGATT TTTGTAAAATCAAGGCTCAATTATAAAGGAAAGTGTCAATAATGTCAAAA AAATGTACAAGCACGAATTCATACGCAAAATTATGTTTGAAGGAAAAACG AAAGAAATCTTCAACATATTTCGAAAATATCTCGTTTTTGAGAAGAAAAG TTTGAAGCTTGAAACTTCAAAAAACATTGTATTTTCAACTTTTTAAAAAT TTTGGCAACCCTGTCTGATACAATTTCTCACAATTTAACGAGTCAGTTAT AAAAAAAAGGTGGAAATATTCAAATTGTTCAAAAAATGTTGTGTGCATAA CTAGTGACATGTCCCTTCAAATTCAATTTTCCTGAATAACTCTCCCCCAG AGGACACTGTTGTAATATTTTTAACATTTTTTTTTCAGCCGAAGATCTAC AGCCAAACAATTTAGTTCTTTTCATTCCAATTCTATCGAATGAATGGATC GTACAATTACATTTCAAACTTCTTGCCGAGCATGCTGGTGAAAGCAAATG GTGTAATATAATACATGTCACAAAGGGTCAAAACAATATTGTTTACGGAG ATCGAACACCAGCCATTTTCTTTGATAAGGTAAATAAAAGATTTTGAAAA AAATCTTTATCGACCCTTCAACGCCAAAAATAGTTCATCACCAAAATAAA ATTTCTGCGTCGTTGAAATTTAATTCATTTTCACAATTATCCAAAATCAA CTCTAATTTTTGTTTGAAGCACTAAATTCTAGGCAGAGAAAAAACCTTCT GCAATGTGCCAAAATTAATTCAAAAATACTTTAAAAAAAACTTTAAATTA ATATTTCTTTGATTCCTTCCTTCTTCTCGCCGAATTAGTTCACGCCATTT AACTTATTTGCTTTTTACTTTCAGACGGACTGTATTTTTTATTTAATCAT ATTTGAAAAATCTTTAGGCAACTTCGCTGCTAAGTATAGGATCGGCAGTG AATGGCAGCAAAAATTACGCTCGGTATCTAACTGTCCAATACAACACCGA ATACAATGTGGAGATTCACCAGCGATACAAAAGTGGAGGTGTTTACAAAT ATTCCATCCTTCTCAATGGAGAAGAAATTCACTCAATAGATAATACACAA GCTCAACAATTTTATGACATGAAAGTTTACATTTCCGATCCTTGGTTCCC GGCATGCAATGGTTGGATTAAACATGTCAAAATTACTAACTTTTTATAAT ATTTTATTTATTAAAGATCTTAAGGAACGTTTTTAGTACCTTAAAGATGG ATATTTTGAGACGAATTTAATTCTAGCAGATGGTTGAAAAAGTTTTTTCG TAACAAATTTAATTGGTGGTTATAGGGTAATATTTCTTGCTAAAAATCGT TATTCTAAGACAAAAAAGTAAAATCAAATTATGAAAAGAACTTTAAAAAT GCACATTTTTTCAGCGTTTTACGGTGAAAATCTCATTGTGAAACAAGACT TCGTTTTAGAGATATGAAGCTTCAAGCACGCCAAGTTGGAGATTAAAAAA AATTGAGATGGAATATTTTCAAAGCAAAAAAGCTAATTAATCAACGTTTG ATTGACAGCTCTCTTTTATGCGATTTTGATGAATTTTTTTCAATTTTAAT GGTTAAACCTATGCACATCGGGGATGTCCTTAATTTGGACCGAAAACACA AAATACTACTTTGTCACGCCTTTTTATTCATTAAAAATGTTCACAACTCG GATCCCAACCGTGACGAGGATAGGAAAGAGCGATCTCTCAAAGACCTTGT TCACAGTCGTAAATTTTCTTTAAAAGCCTTAACACTAATTGACCACTTAT TTTTTTAGAAATACCCAATTAGTAGTAGTTTATAAAAAAAATATAATAAA ACATATTACTTGTTATCCAAATCCTTACTAAGATTAACGTCACTCTTACG GGATTTTCCCGTCATTTTCCCGGGTTAGGCGGCATCGGATTTAAATGGGC TTTGTTCTAAAGGTACAGAAAATCAGGGAATGTAAGGGAAAGGTAATCTT ATGCAAAACAAAAATAACATATTTTCAGCTTTTCGAAATATTCATATTTT GTCATAATATACGAAGCATAACCAGGTAACTTTTAACACGCTCATTTTTA GAAATTTAGGGGGGAAATGTTTGACGTCATAATTGTTTAGGAGGTATTAG TGTTATTTATAGCTTTATTCCTTCAAGAGCAATGTATCAAAATTTGCCAG TTTAACCACAATGATTTATGTATCGACTTTTGTGCTCTTACAAAAATCGT ATGTATTATCTAAAACGAAAAGTTTTTCTTTGATTCCATTTATCAAAGTC ACACCTTTTAAAGATCAATTTATTTGTTATATAATATCACACTTGAGGGA AAGAACATAATTGAAAAGACATAAAAAACACTTAGTAGAAACCACTCTTA TCTGTTTGTTTATTCTCCTCGTGCATAAATTACGAGAAAGAAGAAAAAAA TGAATGGGTGACCGGTTAATGATATGTGGCGAAGTAGTGCTATGCAAACC TTCCAACCTAATTTAGATCGCTTCCAAATCATTTGTGGTTGTAAGACTTC GTGGGAGTTGCCCTTTTTTTCAAATATTATGACTTTGATTGTAGAAAATA CCGAAATTTTTGTAAGAAAACATTTTTGCACTGATTAATTCCTGATGCTT TTTTTCTTTTCTAGTTGACATTTCTGGCATTACGTTTATTCCGGGTAAAA TTTCCTTTTCATTTCAACTTAAACTTTAAAAACACTCTTCAAACAGTTCT TGTAAGATTTTTTTAGGAGTTGAGGGTAAAAAAATAACAGCCTGAAAGTC GATGGAGATTGATATTCCCAGGTATAAAAATGGGCCAAAATATCGTCCCC GTTGAAATAATATTCTCTAAAAAGTCGAGTTTCAGTCATTTATTTTTATC CCCACTGGCTGAAAAAATCTTAACGGGTCTGTGAGAAGGGGGTGTGGTTT CGTAGAGGCCCTGGAATTTTGATGGCACAATTGATGATGTTTGACAACTT CGTGAATTCGAGTAGCACCTTGTATAAGTTTTGGTTCCTTAATAGTTCAT TAGGTGTTTATCCAAAAATACCAACTTCCTTGGTAATTAAGATGAAGAGC AATAAATAGCCTAGAAATCTAAGCTAGTTTGATTCAGTTACTAATTTGTT GGTGTGACTGAAAGCCTTGTAAAAAATGTATGAAAAGTGAGTTCCAAGGC ACAAGGAGGAGAGGTAGACCAGCGAAAAGATGGCAAGATGTTATTAGGGA AGACACTGACCATTGGCAGAACAGTACGTTTGCAATATATTGAATTGGCA TGAGAAGGTCAACAAGTGGGTGAAACCTCACTCAGAGGTGTGCCAGGGTT TTTCCGAAACTTTCCCCGGACATACCCAGTGGCGTAGACAAAAAGTAGGC AAAATTTGTCTAGAAGCGGAGATTTCTTTAACAATATCATAAATTGCGCC GTGAAACATTTCTAACACTTTTGAGACTGAATTTGGAACTCTCCTGTCTA TTATGAAATGTATAGTCATTTATAATGTATAAATAGTGAATGAAGTATTT TTCCTGATTTATATTTTTTTCCCGATACAATTGCAAGATGGTAAGTTGTC AAGGATAAATTGAGCACTCTTCAAATCAATCAACAAATATTTTCCTCATT CCCTCATTTAGTATTAAATTAAATTAATATTACTTTTTTTAGACGAAAAG TTATTATTCAGACAAATCTAAGTACATGGTTCGTTGAATTCTCATTCGAC GGATGCAGACTAAATAGCTATGGTTTTGTTTGGAGGAAGGAAATCTCAAT ATTTTCTATTGGTATTGTTGAGTATTGTACGCATAAATGCTTCAAAATGT TGGCCAAAGGTAAGGAAAGTTTTTTAGAGTTTGAATAAAGACTCTATCTA GCCTTGATTGGATGACGGCGATTAAGTAGCTCGATAGTATATGCATGGTC ATTATAATTACATAGTTTCTTTATAATGACTATGGTACATGGGAAATCTC AGTTTTTAGCTTTCGCGCCTGCGGACTGAAAAAAAGATTCTAGTTGTTTT GCGAATATAAAAGATTAGACTAGCAAACTAGTATGTTAATTAATCATGTC AGAGGGCGGGAACATAAAGGCGGCGGGCGNTAGACTAGCAAACTAGTCTG TTAATTAATCATGTCAGAGGGCGGGAACATAAAGGCGGCGGGCGTTTGCT AGAATAGGAGCTGCGTAGGAGAGCGAGCAAAAATTGGTGAGAGGTTGCTT TCAGCCCTTGCCGCCGACAAATTTTTTCCTACGCTTACCTAACTCCTGCG CTCACTTCTCCCGCGTGATACCGTTCCAGCCCGACTGGCGTGCCAGTCTA ATAAAAGATTCATGTGGCAATGTTTATGTTTGAAAAGAGGGTATTGCTAA TCCTTTTTTGATGTTTTTTTTTCGTTTTTTATCAAACCCGGGGAGGGGAT TCCTTCGATTCCAAAACGTGCAGTGCTTTTTCAAAAATGGAAAAACTTTC GGTTTTCGAGGATCCTGTTCGCACTTCCTCATCTTCTGCCAACCCTAGTA CCCCCTGGGTTATTTATCTGATAAAGATTTGCATATTCACTCAATTCAAC TATGTTCGAAATTTGATTTTAGTCCATAATAAAATCCTTTCCTTCAAAAA CACAAAGAAAATGGAGTGAAGAAGTTCAATTCTATTTTTTTCAGATTCCA GAGAACAATCATGGCATACAGCCAACCACTATAGTGAATGAAGGTAAGTA TTTTTTATATCAATACGTCCTTTTTCTAACAAAGAATGTTTTTAGAAAAA GTATAAAAGAATACTTTTTCAATGGTACTAAAAACCCTTGTCTAACTCTA GTCTAATTGTCTAATTTTAGCTTTCAGCAANNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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TAAAAATAAGGCAGATAAACATTTTTAAAATCAGACATCTTCGAGCCGCC ATGACAGTTGTCCTTTGCGGACAAAGCTAGAACATCAATTGTTTTCTGAA ACAAAGGACATACAATGATCGCTCTCCATCGTTTTATGAGTCGTTTATCC AGTGTATAATAAATCTTTGCTTTCAGATTTAATAAAAAAACGTTGGAAAT TTTGAAATTGTTCAAAAAATGTTGCGTGCATAACTAGTGACACATCCCTT TAAATCCTATTTTCCTGAATAACTCTCCCCCAGAGGACACTGTTGTAATA TTTTTAACATTTTTTTTTCAGCCGAAGATCTACAGCCAAACAATTTACTT CTTTTCATTCCAATTCTATCCAATGAATGGATTGTACAATTACATTTCAA AATTCTTACCGAGCATGCTGGTGGAAGCAATTGGTGTAATATAATACATG TCACAAAGGGTCAAAACAATTTTGTTTACGGAGATCGAACACCAGCCATC TTCTTTAATAAGGTGAAAAAGTTTTTGAAAAAAATCTTTATCAACCCTTC AACGCCAAAATAAAATTTCTGCCTCATTGAAATCTTATTCATTTTCACAA TTATCCAAAATCACCTATAATTTTTGTTTGAAGCACTAAATTCTAGGCAG AGAAAAAACCTTCTGCAATGTGCCAAAATTAATTCAAAAATACTTTAAAA AAAACTTTAAATTAATATTTCTTTGATTCCTTCCTTCTTCTCGCCGAATT AGTTCACGCCATTTAACTTATTTGCTTTTTACTTTCAGACGGACTGTATT TTTTATTTAATCATATTTGAAAAATCTTTAGGCAACTTCGCTACTAAGTA TAGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTAACAGTC CAATACAACACCGAATACAATGTGGAGATTCACCAGCGATACAAAAGTGG AGGTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTCACTCAA CAGATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTACATTTCC GATCCTTGGCTTCCGGCATGCAATGGTTGGATTAAATATATCAAAATTAC TAACTTTTTATAATTTTTTATGGACTTTTAGAATTTTATAGCTAAAAAGG CACATTTATTCAGCGTTTTACGGTGAAAATCTCATTGTGAAACAAGACTT AGTTTTAGCGATATGAAGCTTCAAGTACGCCAATTTGGAGATTAAAAAAA GTTGAGATGGAAAACTTTCAAAGCAAAAAAGCTAATTAATTAATGTTTGA TTGACAGCTCTCTTTTATGCGATTTTGATGAAATTTTTTAATTTTAATGG TTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010862XLOC_010862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019339-exon-sc0000325-1575043694:210393..210438TCONS_00019339-exon-sc0000325-1575043694:210393..210438Clytia hemisphaericaexon
TCONS_00019339-exon-sc0000325-1575043694:201377..201567TCONS_00019339-exon-sc0000325-1575043694:201377..201567Clytia hemisphaericaexon
TCONS_00019339-exon-sc0000325-1575043694:200534..201057TCONS_00019339-exon-sc0000325-1575043694:200534..201057Clytia hemisphaericaexon
TCONS_00019339-exon-sc0000325-1510915933:210393..210438TCONS_00019339-exon-sc0000325-1510915933:210393..210438Clytia hemisphaericaexon
TCONS_00019339-exon-sc0000325-1510915933:201377..201567TCONS_00019339-exon-sc0000325-1510915933:201377..201567Clytia hemisphaericaexon
TCONS_00019339-exon-sc0000325-1510915933:200534..201057TCONS_00019339-exon-sc0000325-1510915933:200534..201057Clytia hemisphaericaexon
TCONS_00019339-exon-sc0000325-1491911889:210393..210438TCONS_00019339-exon-sc0000325-1491911889:210393..210438Clytia hemisphaericaexon
TCONS_00019339-exon-sc0000325-1491911889:201377..201567TCONS_00019339-exon-sc0000325-1491911889:201377..201567Clytia hemisphaericaexon
TCONS_00019339-exon-sc0000325-1491911889:200534..201057TCONS_00019339-exon-sc0000325-1491911889:200534..201057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:200534..210438 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128543 0 0.145542 0.213586 0 0 0.0826309 0 0 0.0670861 0 0 3.03695 1.81301 6.53724e-05 0 0.192993 0 0.171719 1.71954 1.00047 0.484562 0.963431 0 0.918709 2.32376 1.07486 0.601432 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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