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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019339 ID=TCONS_00019339|Name=TCONS_00019339|organism=Clytia hemisphaerica|type=transcript|length=761bp ccaGAGAACAATCATGGCATACAGCCAACCACTATAGTGAATGAAGccgA AGATCTACAGCCAAACAATTTACTTCTTTTCATTCCAATTCTATCCAATG AATGGATTGTacaattacatttcaaaattctTACCGAGCATGCTGGTGGA AGCAATTGGTGTAATATAATACATGTCACAAAGggtcaaaacaattttgt ttaCGGAGATCGAACACCAGCCATCTTCTTTAATAaggCAACTTCGCTAC TAAGTATAGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTA ACAGTCCAATACAACACCGAATACAATGTGGAGATTCACCAGCGATACAA AAGTGGAGGTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTC ACTCAACAGATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTAC ATTTCCGATCCTTGGCTTCCGGCATGCAATGGTTGGattaaatatatcaa aattactaactttttataattttttatggacttttAGAATTTTATAGCTA AAAAGGCACATTTATTCAGCGTTTTACGGTGAAAATCTCATTGTGAAACA AGACTTAGTTTTAGCGATATGAAGCTTCAAGTACGCCAATTTGGAGATTA AAAAAAGTTGAGATGGAAaactttcaaagcaaaaaagcTAATTAATTAAT GTTTGATTGACAGCTCTCTTTTATgcgattttgatgaaattttttaattt taatggtTAAA Run BLAST on NCBI transcript from alignment at sc0000325:200534..210438- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019339 ID=TCONS_00019339|Name=TCONS_00019339|organism=Clytia hemisphaerica|type=transcript|length=9905bp|location=Sequence derived from alignment at sc0000325:200534..210438- (Clytia hemisphaerica) CCAGAGAACAATCATGGCATACAGCCAACCACTATAGTGAATGAAGGTAA
TTATTCTTTATATCAATACGTCCTTTTTCTAACGAAGACCCTCGAAAAAC
CCGGAATTTACCTACTGTCTGTTACGTAGTGAAACATAGTGGTTAAAATC
CCGCTTTTTCGGGTGCTTCCGCTAGAAAACATGAAATTAACTAAGTGATT
TTTGTAAAATCAAGGCTCAATTATAAAGGAAAGTGTCAATAATGTCAAAA
AAATGTACAAGCACGAATTCATACGCAAAATTATGTTTGAAGGAAAAACG
AAAGAAATCTTCAACATATTTCGAAAATATCTCGTTTTTGAGAAGAAAAG
TTTGAAGCTTGAAACTTCAAAAAACATTGTATTTTCAACTTTTTAAAAAT
TTTGGCAACCCTGTCTGATACAATTTCTCACAATTTAACGAGTCAGTTAT
AAAAAAAAGGTGGAAATATTCAAATTGTTCAAAAAATGTTGTGTGCATAA
CTAGTGACATGTCCCTTCAAATTCAATTTTCCTGAATAACTCTCCCCCAG
AGGACACTGTTGTAATATTTTTAACATTTTTTTTTCAGCCGAAGATCTAC
AGCCAAACAATTTAGTTCTTTTCATTCCAATTCTATCGAATGAATGGATC
GTACAATTACATTTCAAACTTCTTGCCGAGCATGCTGGTGAAAGCAAATG
GTGTAATATAATACATGTCACAAAGGGTCAAAACAATATTGTTTACGGAG
ATCGAACACCAGCCATTTTCTTTGATAAGGTAAATAAAAGATTTTGAAAA
AAATCTTTATCGACCCTTCAACGCCAAAAATAGTTCATCACCAAAATAAA
ATTTCTGCGTCGTTGAAATTTAATTCATTTTCACAATTATCCAAAATCAA
CTCTAATTTTTGTTTGAAGCACTAAATTCTAGGCAGAGAAAAAACCTTCT
GCAATGTGCCAAAATTAATTCAAAAATACTTTAAAAAAAACTTTAAATTA
ATATTTCTTTGATTCCTTCCTTCTTCTCGCCGAATTAGTTCACGCCATTT
AACTTATTTGCTTTTTACTTTCAGACGGACTGTATTTTTTATTTAATCAT
ATTTGAAAAATCTTTAGGCAACTTCGCTGCTAAGTATAGGATCGGCAGTG
AATGGCAGCAAAAATTACGCTCGGTATCTAACTGTCCAATACAACACCGA
ATACAATGTGGAGATTCACCAGCGATACAAAAGTGGAGGTGTTTACAAAT
ATTCCATCCTTCTCAATGGAGAAGAAATTCACTCAATAGATAATACACAA
GCTCAACAATTTTATGACATGAAAGTTTACATTTCCGATCCTTGGTTCCC
GGCATGCAATGGTTGGATTAAACATGTCAAAATTACTAACTTTTTATAAT
ATTTTATTTATTAAAGATCTTAAGGAACGTTTTTAGTACCTTAAAGATGG
ATATTTTGAGACGAATTTAATTCTAGCAGATGGTTGAAAAAGTTTTTTCG
TAACAAATTTAATTGGTGGTTATAGGGTAATATTTCTTGCTAAAAATCGT
TATTCTAAGACAAAAAAGTAAAATCAAATTATGAAAAGAACTTTAAAAAT
GCACATTTTTTCAGCGTTTTACGGTGAAAATCTCATTGTGAAACAAGACT
TCGTTTTAGAGATATGAAGCTTCAAGCACGCCAAGTTGGAGATTAAAAAA
AATTGAGATGGAATATTTTCAAAGCAAAAAAGCTAATTAATCAACGTTTG
ATTGACAGCTCTCTTTTATGCGATTTTGATGAATTTTTTTCAATTTTAAT
GGTTAAACCTATGCACATCGGGGATGTCCTTAATTTGGACCGAAAACACA
AAATACTACTTTGTCACGCCTTTTTATTCATTAAAAATGTTCACAACTCG
GATCCCAACCGTGACGAGGATAGGAAAGAGCGATCTCTCAAAGACCTTGT
TCACAGTCGTAAATTTTCTTTAAAAGCCTTAACACTAATTGACCACTTAT
TTTTTTAGAAATACCCAATTAGTAGTAGTTTATAAAAAAAATATAATAAA
ACATATTACTTGTTATCCAAATCCTTACTAAGATTAACGTCACTCTTACG
GGATTTTCCCGTCATTTTCCCGGGTTAGGCGGCATCGGATTTAAATGGGC
TTTGTTCTAAAGGTACAGAAAATCAGGGAATGTAAGGGAAAGGTAATCTT
ATGCAAAACAAAAATAACATATTTTCAGCTTTTCGAAATATTCATATTTT
GTCATAATATACGAAGCATAACCAGGTAACTTTTAACACGCTCATTTTTA
GAAATTTAGGGGGGAAATGTTTGACGTCATAATTGTTTAGGAGGTATTAG
TGTTATTTATAGCTTTATTCCTTCAAGAGCAATGTATCAAAATTTGCCAG
TTTAACCACAATGATTTATGTATCGACTTTTGTGCTCTTACAAAAATCGT
ATGTATTATCTAAAACGAAAAGTTTTTCTTTGATTCCATTTATCAAAGTC
ACACCTTTTAAAGATCAATTTATTTGTTATATAATATCACACTTGAGGGA
AAGAACATAATTGAAAAGACATAAAAAACACTTAGTAGAAACCACTCTTA
TCTGTTTGTTTATTCTCCTCGTGCATAAATTACGAGAAAGAAGAAAAAAA
TGAATGGGTGACCGGTTAATGATATGTGGCGAAGTAGTGCTATGCAAACC
TTCCAACCTAATTTAGATCGCTTCCAAATCATTTGTGGTTGTAAGACTTC
GTGGGAGTTGCCCTTTTTTTCAAATATTATGACTTTGATTGTAGAAAATA
CCGAAATTTTTGTAAGAAAACATTTTTGCACTGATTAATTCCTGATGCTT
TTTTTCTTTTCTAGTTGACATTTCTGGCATTACGTTTATTCCGGGTAAAA
TTTCCTTTTCATTTCAACTTAAACTTTAAAAACACTCTTCAAACAGTTCT
TGTAAGATTTTTTTAGGAGTTGAGGGTAAAAAAATAACAGCCTGAAAGTC
GATGGAGATTGATATTCCCAGGTATAAAAATGGGCCAAAATATCGTCCCC
GTTGAAATAATATTCTCTAAAAAGTCGAGTTTCAGTCATTTATTTTTATC
CCCACTGGCTGAAAAAATCTTAACGGGTCTGTGAGAAGGGGGTGTGGTTT
CGTAGAGGCCCTGGAATTTTGATGGCACAATTGATGATGTTTGACAACTT
CGTGAATTCGAGTAGCACCTTGTATAAGTTTTGGTTCCTTAATAGTTCAT
TAGGTGTTTATCCAAAAATACCAACTTCCTTGGTAATTAAGATGAAGAGC
AATAAATAGCCTAGAAATCTAAGCTAGTTTGATTCAGTTACTAATTTGTT
GGTGTGACTGAAAGCCTTGTAAAAAATGTATGAAAAGTGAGTTCCAAGGC
ACAAGGAGGAGAGGTAGACCAGCGAAAAGATGGCAAGATGTTATTAGGGA
AGACACTGACCATTGGCAGAACAGTACGTTTGCAATATATTGAATTGGCA
TGAGAAGGTCAACAAGTGGGTGAAACCTCACTCAGAGGTGTGCCAGGGTT
TTTCCGAAACTTTCCCCGGACATACCCAGTGGCGTAGACAAAAAGTAGGC
AAAATTTGTCTAGAAGCGGAGATTTCTTTAACAATATCATAAATTGCGCC
GTGAAACATTTCTAACACTTTTGAGACTGAATTTGGAACTCTCCTGTCTA
TTATGAAATGTATAGTCATTTATAATGTATAAATAGTGAATGAAGTATTT
TTCCTGATTTATATTTTTTTCCCGATACAATTGCAAGATGGTAAGTTGTC
AAGGATAAATTGAGCACTCTTCAAATCAATCAACAAATATTTTCCTCATT
CCCTCATTTAGTATTAAATTAAATTAATATTACTTTTTTTAGACGAAAAG
TTATTATTCAGACAAATCTAAGTACATGGTTCGTTGAATTCTCATTCGAC
GGATGCAGACTAAATAGCTATGGTTTTGTTTGGAGGAAGGAAATCTCAAT
ATTTTCTATTGGTATTGTTGAGTATTGTACGCATAAATGCTTCAAAATGT
TGGCCAAAGGTAAGGAAAGTTTTTTAGAGTTTGAATAAAGACTCTATCTA
GCCTTGATTGGATGACGGCGATTAAGTAGCTCGATAGTATATGCATGGTC
ATTATAATTACATAGTTTCTTTATAATGACTATGGTACATGGGAAATCTC
AGTTTTTAGCTTTCGCGCCTGCGGACTGAAAAAAAGATTCTAGTTGTTTT
GCGAATATAAAAGATTAGACTAGCAAACTAGTATGTTAATTAATCATGTC
AGAGGGCGGGAACATAAAGGCGGCGGGCGNTAGACTAGCAAACTAGTCTG
TTAATTAATCATGTCAGAGGGCGGGAACATAAAGGCGGCGGGCGTTTGCT
AGAATAGGAGCTGCGTAGGAGAGCGAGCAAAAATTGGTGAGAGGTTGCTT
TCAGCCCTTGCCGCCGACAAATTTTTTCCTACGCTTACCTAACTCCTGCG
CTCACTTCTCCCGCGTGATACCGTTCCAGCCCGACTGGCGTGCCAGTCTA
ATAAAAGATTCATGTGGCAATGTTTATGTTTGAAAAGAGGGTATTGCTAA
TCCTTTTTTGATGTTTTTTTTTCGTTTTTTATCAAACCCGGGGAGGGGAT
TCCTTCGATTCCAAAACGTGCAGTGCTTTTTCAAAAATGGAAAAACTTTC
GGTTTTCGAGGATCCTGTTCGCACTTCCTCATCTTCTGCCAACCCTAGTA
CCCCCTGGGTTATTTATCTGATAAAGATTTGCATATTCACTCAATTCAAC
TATGTTCGAAATTTGATTTTAGTCCATAATAAAATCCTTTCCTTCAAAAA
CACAAAGAAAATGGAGTGAAGAAGTTCAATTCTATTTTTTTCAGATTCCA
GAGAACAATCATGGCATACAGCCAACCACTATAGTGAATGAAGGTAAGTA
TTTTTTATATCAATACGTCCTTTTTCTAACAAAGAATGTTTTTAGAAAAA
GTATAAAAGAATACTTTTTCAATGGTACTAAAAACCCTTGTCTAACTCTA
GTCTAATTGTCTAATTTTAGCTTTCAGCAANNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCTTATATTTTAGCGAT
AACACACACAAACTTTTTTACTCAATTGCATGTTCAAACTCGATACTTTT
ATTAGGGACACCCTGTACAAGTAACAGATTTTTGCTGATTTCTCGTGTAC
TAGCTATGTCCGCAGTAATGATAGTATTGCTCACTCTCCTTCCCTCATTA
AATGGTTTTTCGAAGCATTTTTATTGCATTTCTTATCGAAAACCACTCAT
CCAATTCCCAAAGGAGACTTAAAACTTTCCTGTGAGAGTCATATTCTTTC
ACTTAATTGCTAATTATAAGTCGTTATGACGTTTCAAGCTGTGAGAAAGA
TACAAAAGACGTCTTGTGTATAAGAAATTTAACGTTGACACCGGAAATTT
TCAAACTTCAACCTAAAAAAAACCACCTTGCCACCACGTGCCTCCAAAGG
ATTTTCATACCACAGTGGAGCCAAGACACTCAATTATTATGTATGTTAAT
TTCAGCTCTTCTGGGAACAGCCTTGGAAAGATATTTCCAATTCAAAATTT
TGTGTCACTATAAGCATTTTGGCTGGATATCTTGTCTAAAGATATTTTTC
TCTCATTAGATTTCACAAATGTATCTGGCTTGGAATACTAGCCTTACTTT
CAAACTCTTTTTTCTGCAAATGTACAAAAAGAAAGAGCTAGAGAACTTTT
TAAAAATAAGGCAGATAAACATTTTTAAAATCAGACATCTTCGAGCCGCC
ATGACAGTTGTCCTTTGCGGACAAAGCTAGAACATCAATTGTTTTCTGAA
ACAAAGGACATACAATGATCGCTCTCCATCGTTTTATGAGTCGTTTATCC
AGTGTATAATAAATCTTTGCTTTCAGATTTAATAAAAAAACGTTGGAAAT
TTTGAAATTGTTCAAAAAATGTTGCGTGCATAACTAGTGACACATCCCTT
TAAATCCTATTTTCCTGAATAACTCTCCCCCAGAGGACACTGTTGTAATA
TTTTTAACATTTTTTTTTCAGCCGAAGATCTACAGCCAAACAATTTACTT
CTTTTCATTCCAATTCTATCCAATGAATGGATTGTACAATTACATTTCAA
AATTCTTACCGAGCATGCTGGTGGAAGCAATTGGTGTAATATAATACATG
TCACAAAGGGTCAAAACAATTTTGTTTACGGAGATCGAACACCAGCCATC
TTCTTTAATAAGGTGAAAAAGTTTTTGAAAAAAATCTTTATCAACCCTTC
AACGCCAAAATAAAATTTCTGCCTCATTGAAATCTTATTCATTTTCACAA
TTATCCAAAATCACCTATAATTTTTGTTTGAAGCACTAAATTCTAGGCAG
AGAAAAAACCTTCTGCAATGTGCCAAAATTAATTCAAAAATACTTTAAAA
AAAACTTTAAATTAATATTTCTTTGATTCCTTCCTTCTTCTCGCCGAATT
AGTTCACGCCATTTAACTTATTTGCTTTTTACTTTCAGACGGACTGTATT
TTTTATTTAATCATATTTGAAAAATCTTTAGGCAACTTCGCTACTAAGTA
TAGGATCGGCAGTGAATGGCAGCAAAAATTACGCTCGGTATCTAACAGTC
CAATACAACACCGAATACAATGTGGAGATTCACCAGCGATACAAAAGTGG
AGGTGTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATTCACTCAA
CAGATAATACACAAGCTCAACAATTTTATGACATGAAAGTTTACATTTCC
GATCCTTGGCTTCCGGCATGCAATGGTTGGATTAAATATATCAAAATTAC
TAACTTTTTATAATTTTTTATGGACTTTTAGAATTTTATAGCTAAAAAGG
CACATTTATTCAGCGTTTTACGGTGAAAATCTCATTGTGAAACAAGACTT
AGTTTTAGCGATATGAAGCTTCAAGTACGCCAATTTGGAGATTAAAAAAA
GTTGAGATGGAAAACTTTCAAAGCAAAAAAGCTAATTAATTAATGTTTGA
TTGACAGCTCTCTTTTATGCGATTTTGATGAAATTTTTTAATTTTAATGG
TTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00019339-exon-sc0000325-1575043694:210393..210438 | TCONS_00019339-exon-sc0000325-1575043694:210393..210438 | Clytia hemisphaerica | exon |
TCONS_00019339-exon-sc0000325-1575043694:201377..201567 | TCONS_00019339-exon-sc0000325-1575043694:201377..201567 | Clytia hemisphaerica | exon |
TCONS_00019339-exon-sc0000325-1575043694:200534..201057 | TCONS_00019339-exon-sc0000325-1575043694:200534..201057 | Clytia hemisphaerica | exon |
TCONS_00019339-exon-sc0000325-1510915933:210393..210438 | TCONS_00019339-exon-sc0000325-1510915933:210393..210438 | Clytia hemisphaerica | exon |
TCONS_00019339-exon-sc0000325-1510915933:201377..201567 | TCONS_00019339-exon-sc0000325-1510915933:201377..201567 | Clytia hemisphaerica | exon |
TCONS_00019339-exon-sc0000325-1510915933:200534..201057 | TCONS_00019339-exon-sc0000325-1510915933:200534..201057 | Clytia hemisphaerica | exon |
TCONS_00019339-exon-sc0000325-1491911889:210393..210438 | TCONS_00019339-exon-sc0000325-1491911889:210393..210438 | Clytia hemisphaerica | exon |
TCONS_00019339-exon-sc0000325-1491911889:201377..201567 | TCONS_00019339-exon-sc0000325-1491911889:201377..201567 | Clytia hemisphaerica | exon |
TCONS_00019339-exon-sc0000325-1491911889:200534..201057 | TCONS_00019339-exon-sc0000325-1491911889:200534..201057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000325 | supercontig | sc0000325:200534..210438 - |
Blast
The following BLAST results are available for this feature:
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